Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01D020047.5 |
| Conread position: | 1-116 |
| Cow position: | chr27:12191607-12191492 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 92 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 113, 89 |
| Conread position: | 1-147 |
| Cow position: | chr27:27064568-27064421 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 1-148 |
| Cow position: | chr27:15343404-15343261 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 1-148 |
| Cow position: | chr27:19544049-19543899 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 109 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 1-148 |
| Cow position: | chr27:21453223-21453073 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 1-148 |
| Cow position: | chr27:27270671-27270519 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 77, 98 |
| Conread position: | 1-149 |
| Cow position: | chr27:11561647-11561796 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 1-150 |
| Cow position: | chr27:1637064-1636914 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 1-150 |
| Cow position: | chr27:26490037-26489884 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 1-150 |
| Cow position: | chr27:28260664-28260516 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 93, 59 |
| Conread position: | 1-151 |
| Cow position: | chr27:26413383-26413231 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 1-151 |
| Cow position: | chr27:29184966-29184816 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-151 |
| Cow position: | chr27:30261021-30260867 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1-151 |
| Cow position: | chr27:30914881-30915029 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 1-152 |
| Cow position: | chr27:28271279-28271128 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 90, 97 |
| Conread position: | 1-153 |
| Cow position: | chr27:15643046-15643195 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 1-156 |
| Cow position: | chr27:9169768-9169618 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 116, 11 |
| Conread position: | 1-156 |
| Cow position: | chr27:15925217-15925368 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 1-156 |
| Cow position: | chr27:17918442-17918288 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 1-156 |
| Cow position: | chr27:20584583-20584430 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 1-156 |
| Cow position: | chr27:22423387-22423537 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 1-159 |
| Cow position: | chr27:2644219-2644061 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 93, 101 |
| Conread position: | 1-159 |
| Cow position: | chr27:4155867-4156032 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 1-159 |
| Cow position: | chr27:6541503-6541659 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 105, 89 |
| Conread position: | 1-159 |
| Cow position: | chr27:6550335-6550487 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 1-159 |
| Cow position: | chr27:8263466-8263305 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 1-159 |
| Cow position: | chr27:10992228-10992387 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 112, 57 |
| Conread position: | 1-159 |
| Cow position: | chr27:14303609-14303764 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 68, 52 |
| Conread position: | 1-159 |
| Cow position: | chr27:15865478-15865641 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 1-159 |
| Cow position: | chr27:15867261-15867426 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 61, 146 |
| Conread position: | 1-159 |
| Cow position: | chr27:16088675-16088839 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 1-159 |
| Cow position: | chr27:18593144-18593299 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 117, 52 |
| Conread position: | 1-159 |
| Cow position: | chr27:18922961-18922800 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 116, 47 |
| Conread position: | 1-159 |
| Cow position: | chr27:22454904-22454748 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 1-166 |
| Cow position: | chr27:2592413-2592585 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 1-166 |
| Cow position: | chr27:16705122-16705289 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 1-166 |
| Cow position: | chr27:22559952-22559787 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 109, 52 |
| Conread position: | 1-166 |
| Cow position: | chr27:29593757-29593591 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 117, 52 |
| Conread position: | 1-169 |
| Cow position: | chr27:17646297-17646127 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 1-170 |
| Cow position: | chr27:1290980-1290812 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 105, 140 |
| Conread position: | 1-170 |
| Cow position: | chr27:8062479-8062315 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 1-170 |
| Cow position: | chr27:8168559-8168392 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 118 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 1-170 |
| Cow position: | chr27:26112044-26111870 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 74, 146 |
| Conread position: | 1-170 |
| Cow position: | chr27:26428261-26428094 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 108, 128 |
| Conread position: | 1-170 |
| Cow position: | chr27:28922021-28921858 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 52, 40 |
| Conread position: | 1-170 |
| Cow position: | chr27:30868869-30868701 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 114, 153 |
| Conread position: | 1-170 |
| Cow position: | chr27:31017954-31017795 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 1-171 |
| Cow position: | chr27:1353454-1353629 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 1-171 |
| Cow position: | chr27:12596648-12596807 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 85, 58 |
| Conread position: | 1-171 |
| Cow position: | chr27:19660803-19660975 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 102, 158 |
| Conread position: | 1-171 |
| Cow position: | chr27:22225721-22225553 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 120, 50 |
| Conread position: | 1-171 |
| Cow position: | chr27:27641140-27640960 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 116, 33 |
| Conread position: | 1-171 |
| Cow position: | chr27:29831826-29831654 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 117, 106 |
| Conread position: | 1-171 |
| Cow position: | chr27:30988669-30988838 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-171 |
| Cow position: | chr27:31148632-31148803 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 1-185 |
| Cow position: | chr27:20812776-20812968 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 2-148 |
| Cow position: | chr27:26920039-26919883 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 2-159 |
| Cow position: | chr27:8942817-8942653 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 2-159 |
| Cow position: | chr27:30672686-30672534 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 2-166 |
| Cow position: | chr27:21975925-21976086 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 2-170 |
| Cow position: | chr27:10979735-10979902 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 92, 131 |
| Conread position: | 3-159 |
| Cow position: | chr27:3306648-3306800 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 3-159 |
| Cow position: | chr27:6924958-6925119 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 3-159 |
| Cow position: | chr27:18558234-18558389 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 107, 43 |
| Conread position: | 4-159 |
| Cow position: | chr27:26786116-26785960 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 40, 31 |
| Conread position: | 5-170 |
| Cow position: | chr27:4386186-4386022 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 115, 153 |
| Conread position: | 6-170 |
| Cow position: | chr27:15215106-15215272 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 112, 79 |
| Conread position: | 7-151 |
| Cow position: | chr27:10653562-10653708 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 109 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 10-170 |
| Cow position: | chr27:11435442-11435283 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 103, 130 |
| Conread position: | 10-172 |
| Cow position: | chr27:30354464-30354300 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 11-151 |
| Cow position: | chr27:26793902-26793766 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 13-170 |
| Cow position: | chr27:20247921-20247768 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 96, 51 |
| Conread position: | 22-170 |
| Cow position: | chr27:30764923-30765075 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 87, 139 |
| Conread position: | 22-170 |
| Cow position: | chr27:30829536-30829687 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 97, 16 |
| Conread position: | 22-173 |
| Cow position: | chr27:25379880-25380037 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 23-173 |
| Cow position: | chr27:24999847-24999698 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 69, 75 |
| Conread position: | 24-149 |
| Cow position: | chr27:20056074-20055950 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 20, 89 |
| Conread position: | 24-170 |
| Cow position: | chr27:8962363-8962217 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 58, 133 |
Show alignments to all cow chromosomes.