Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01D020047.5 |
| Conread position: | 1-118 |
| Cow position: | chr28:10615856-10615974 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 92 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 1-133 |
| Cow position: | chr28:7156927-7156791 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 1-135 |
| Cow position: | chr28:5235971-5235837 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 124, 101 |
| Conread position: | 1-143 |
| Cow position: | chr28:17601464-17601605 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 1-149 |
| Cow position: | chr28:11559542-11559694 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 1-150 |
| Cow position: | chr28:5144431-5144579 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 1-150 |
| Cow position: | chr28:7805332-7805484 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 114, 96 |
| Conread position: | 1-150 |
| Cow position: | chr28:20397280-20397430 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 1-151 |
| Cow position: | chr28:4307807-4307964 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 1-151 |
| Cow position: | chr28:16085415-16085263 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 42, 38 |
| Conread position: | 1-151 |
| Cow position: | chr28:31109914-31110064 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-152 |
| Cow position: | chr28:4098920-4098767 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 1-152 |
| Cow position: | chr28:4765766-4765614 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 33, 117 |
| Conread position: | 1-152 |
| Cow position: | chr28:28765813-28765966 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 1-156 |
| Cow position: | chr28:3078592-3078748 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 118, 29 |
| Conread position: | 1-156 |
| Cow position: | chr28:3449393-3449236 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 1-156 |
| Cow position: | chr28:4643680-4643833 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 1-156 |
| Cow position: | chr28:4823694-4823541 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 1-156 |
| Cow position: | chr28:19564138-19564297 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 1-156 |
| Cow position: | chr28:21380972-21380813 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 1-156 |
| Cow position: | chr28:25727462-25727305 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 104, 66 |
| Conread position: | 1-159 |
| Cow position: | chr28:2752404-2752563 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 1-159 |
| Cow position: | chr28:4016621-4016464 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 1-159 |
| Cow position: | chr28:4841300-4841466 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 49, 154 |
| Conread position: | 1-159 |
| Cow position: | chr28:5792798-5792638 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 1-159 |
| Cow position: | chr28:7008888-7009045 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 1-159 |
| Cow position: | chr28:8147774-8147930 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 43, 28 |
| Conread position: | 1-159 |
| Cow position: | chr28:17398144-17398294 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 1-159 |
| Cow position: | chr28:17414385-17414535 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 1-159 |
| Cow position: | chr28:21355321-21355155 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 1-159 |
| Cow position: | chr28:23007640-23007802 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 1-159 |
| Cow position: | chr28:26103792-26103640 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 80, 52 |
| Conread position: | 1-159 |
| Cow position: | chr28:27161237-27161396 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 112, 26 |
| Conread position: | 1-165 |
| Cow position: | chr28:20759612-20759776 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 97, 21 |
| Conread position: | 1-166 |
| Cow position: | chr28:7372032-7372197 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 113, 129 |
| Conread position: | 1-169 |
| Cow position: | chr28:6059380-6059549 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 1-169 |
| Cow position: | chr28:11866575-11866744 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 117, 146 |
| Conread position: | 1-170 |
| Cow position: | chr28:4881150-4881314 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 1-170 |
| Cow position: | chr28:7388682-7388845 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1-170 |
| Cow position: | chr28:10053235-10053410 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 66, 162 |
| Conread position: | 1-170 |
| Cow position: | chr28:11346397-11346561 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 1-170 |
| Cow position: | chr28:20313367-20313198 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 106, 155 |
| Conread position: | 1-170 |
| Cow position: | chr28:21598162-21598331 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 105, 156 |
| Conread position: | 1-170 |
| Cow position: | chr28:23410233-23410402 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 48, 152 |
| Conread position: | 1-170 |
| Cow position: | chr28:23676228-23676063 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 1-170 |
| Cow position: | chr28:25677251-25677424 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 65, 160 |
| Conread position: | 1-170 |
| Cow position: | chr28:26743716-26743546 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 118, 161 |
| Conread position: | 1-170 |
| Cow position: | chr28:26922278-26922444 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 1-170 |
| Cow position: | chr28:30865507-30865338 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 109, 44 |
| Conread position: | 1-170 |
| Cow position: | chr28:32174719-32174552 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 70, 96 |
| Conread position: | 1-171 |
| Cow position: | chr28:3011180-3011353 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 22, 41 |
| Conread position: | 1-171 |
| Cow position: | chr28:8408824-8408654 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-171 |
| Cow position: | chr28:17601785-17601954 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 99, 136 |
| Conread position: | 1-171 |
| Cow position: | chr28:26982648-26982817 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 1-171 |
| Cow position: | chr28:32365934-32365762 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 108, 122 |
| Conread position: | 1-172 |
| Cow position: | chr28:25728284-25728118 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 2-148 |
| Cow position: | chr28:5166856-5166709 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 117, 46 |
| Conread position: | 2-159 |
| Cow position: | chr28:5931441-5931284 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 113, 38 |
| Conread position: | 2-170 |
| Cow position: | chr28:4282402-4282567 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 2-170 |
| Cow position: | chr28:12672376-12672540 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 3-156 |
| Cow position: | chr28:29434340-29434498 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 3-159 |
| Cow position: | chr28:7228300-7228453 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 3-159 |
| Cow position: | chr28:18354245-18354392 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 3-164 |
| Cow position: | chr28:26685205-26685043 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 110, 73 |
| Conread position: | 4-170 |
| Cow position: | chr28:662193-662031 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 4-172 |
| Cow position: | chr28:8291514-8291343 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 108, 56 |
| Conread position: | 5-156 |
| Cow position: | chr28:26719429-26719285 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 5-170 |
| Cow position: | chr28:30746644-30746805 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 6-170 |
| Cow position: | chr28:3160868-3161031 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 103, 150 |
| Conread position: | 9-170 |
| Cow position: | chr28:616468-616306 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 100, 149 |
| Conread position: | 10-142 |
| Cow position: | chr28:11059581-11059451 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 101 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 10-169 |
| Cow position: | chr28:10529409-10529568 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 111, 100 |
| Conread position: | 11-151 |
| Cow position: | chr28:19222071-19222211 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 117, 86 |
| Conread position: | 11-166 |
| Cow position: | chr28:25806653-25806497 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 19-170 |
| Cow position: | chr28:5827022-5826874 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 22-159 |
| Cow position: | chr28:17012225-17012360 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 22-170 |
| Cow position: | chr28:8347800-8347654 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 22-171 |
| Cow position: | chr28:9100002-9099856 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 92, 15 |
| Conread position: | 26-143 |
| Cow position: | chr28:5650672-5650790 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 93 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 29-151 |
| Cow position: | chr28:21502454-21502333 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 84, 0 |
Show alignments to all cow chromosomes.