Cow genome map
Conread name: | Ss1.1-Tra1-TCH01D020047.5 |
Conread position: | 1-113 |
Cow position: | chr29:31934462-31934350 (view UCSC Genome Browser custom track) |
Alignm length: | 113 |
Alignm identity: | 89 |
Alignm E-value: | 1e-21 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 1-117 |
Cow position: | chr29:4423356-4423471 (view UCSC Genome Browser custom track) |
Alignm length: | 117 |
Alignm identity: | 92 |
Alignm E-value: | 1e-21 |
Alignm gaps (pig, cow): | 109, 0 |
Conread position: | 1-117 |
Cow position: | chr29:5789111-5788996 (view UCSC Genome Browser custom track) |
Alignm length: | 117 |
Alignm identity: | 93 |
Alignm E-value: | 1e-22 |
Alignm gaps (pig, cow): | 38, 0 |
Conread position: | 1-118 |
Cow position: | chr29:5520402-5520519 (view UCSC Genome Browser custom track) |
Alignm length: | 118 |
Alignm identity: | 97 |
Alignm E-value: | 7e-27 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 1-125 |
Cow position: | chr29:8686413-8686287 (view UCSC Genome Browser custom track) |
Alignm length: | 127 |
Alignm identity: | 98 |
Alignm E-value: | 4e-22 |
Alignm gaps (pig, cow): | 115, 0 |
Conread position: | 1-146 |
Cow position: | chr29:501280-501137 (view UCSC Genome Browser custom track) |
Alignm length: | 147 |
Alignm identity: | 109 |
Alignm E-value: | 3e-21 |
Alignm gaps (pig, cow): | 115, 80 |
Conread position: | 1-147 |
Cow position: | chr29:26263919-26263772 (view UCSC Genome Browser custom track) |
Alignm length: | 148 |
Alignm identity: | 108 |
Alignm E-value: | 4e-22 |
Alignm gaps (pig, cow): | 99, 0 |
Conread position: | 1-147 |
Cow position: | chr29:42630204-42630058 (view UCSC Genome Browser custom track) |
Alignm length: | 147 |
Alignm identity: | 108 |
Alignm E-value: | 1e-23 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 1-149 |
Cow position: | chr29:41365192-41365047 (view UCSC Genome Browser custom track) |
Alignm length: | 149 |
Alignm identity: | 111 |
Alignm E-value: | 1e-22 |
Alignm gaps (pig, cow): | 37, 0 |
Conread position: | 1-150 |
Cow position: | chr29:29057258-29057113 (view UCSC Genome Browser custom track) |
Alignm length: | 150 |
Alignm identity: | 116 |
Alignm E-value: | 2e-26 |
Alignm gaps (pig, cow): | 56, 0 |
Conread position: | 1-151 |
Cow position: | chr29:5046736-5046585 (view UCSC Genome Browser custom track) |
Alignm length: | 152 |
Alignm identity: | 112 |
Alignm E-value: | 5e-24 |
Alignm gaps (pig, cow): | 116, 0 |
Conread position: | 1-151 |
Cow position: | chr29:17222496-17222346 (view UCSC Genome Browser custom track) |
Alignm length: | 152 |
Alignm identity: | 114 |
Alignm E-value: | 5e-25 |
Alignm gaps (pig, cow): | 115, 131 |
Conread position: | 1-151 |
Cow position: | chr29:23812956-23813105 (view UCSC Genome Browser custom track) |
Alignm length: | 151 |
Alignm identity: | 110 |
Alignm E-value: | 1e-22 |
Alignm gaps (pig, cow): | 126, 0 |
Conread position: | 1-153 |
Cow position: | chr29:109770-109628 (view UCSC Genome Browser custom track) |
Alignm length: | 153 |
Alignm identity: | 117 |
Alignm E-value: | 4e-23 |
Alignm gaps (pig, cow): | 52, 0 |
Conread position: | 1-153 |
Cow position: | chr29:868858-868706 (view UCSC Genome Browser custom track) |
Alignm length: | 153 |
Alignm identity: | 114 |
Alignm E-value: | 2e-26 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 1-153 |
Cow position: | chr29:4085392-4085250 (view UCSC Genome Browser custom track) |
Alignm length: | 153 |
Alignm identity: | 116 |
Alignm E-value: | 4e-22 |
Alignm gaps (pig, cow): | 54, 0 |
Conread position: | 1-153 |
Cow position: | chr29:26653961-26654109 (view UCSC Genome Browser custom track) |
Alignm length: | 155 |
Alignm identity: | 115 |
Alignm E-value: | 3e-21 |
Alignm gaps (pig, cow): | 58, 102 |
Conread position: | 1-153 |
Cow position: | chr29:28195438-28195582 (view UCSC Genome Browser custom track) |
Alignm length: | 153 |
Alignm identity: | 115 |
Alignm E-value: | 3e-21 |
Alignm gaps (pig, cow): | 51, 0 |
Conread position: | 1-153 |
Cow position: | chr29:40633726-40633577 (view UCSC Genome Browser custom track) |
Alignm length: | 153 |
Alignm identity: | 113 |
Alignm E-value: | 1e-22 |
Alignm gaps (pig, cow): | 106, 0 |
Conread position: | 1-153 |
Cow position: | chr29:40853011-40852860 (view UCSC Genome Browser custom track) |
Alignm length: | 153 |
Alignm identity: | 112 |
Alignm E-value: | 1e-23 |
Alignm gaps (pig, cow): | 115, 0 |
Conread position: | 1-156 |
Cow position: | chr29:5210574-5210414 (view UCSC Genome Browser custom track) |
Alignm length: | 162 |
Alignm identity: | 120 |
Alignm E-value: | 1e-22 |
Alignm gaps (pig, cow): | 116, 41 |
Conread position: | 1-156 |
Cow position: | chr29:6286078-6286230 (view UCSC Genome Browser custom track) |
Alignm length: | 156 |
Alignm identity: | 115 |
Alignm E-value: | 5e-24 |
Alignm gaps (pig, cow): | 108, 0 |
Conread position: | 1-156 |
Cow position: | chr29:9912259-9912100 (view UCSC Genome Browser custom track) |
Alignm length: | 160 |
Alignm identity: | 119 |
Alignm E-value: | 2e-25 |
Alignm gaps (pig, cow): | 117, 0 |
Conread position: | 1-159 |
Cow position: | chr29:706873-707026 (view UCSC Genome Browser custom track) |
Alignm length: | 161 |
Alignm identity: | 120 |
Alignm E-value: | 1e-22 |
Alignm gaps (pig, cow): | 108, 50 |
Conread position: | 1-159 |
Cow position: | chr29:2262912-2263072 (view UCSC Genome Browser custom track) |
Alignm length: | 164 |
Alignm identity: | 121 |
Alignm E-value: | 1e-22 |
Alignm gaps (pig, cow): | 112, 50 |
Conread position: | 1-159 |
Cow position: | chr29:4051908-4052065 (view UCSC Genome Browser custom track) |
Alignm length: | 164 |
Alignm identity: | 127 |
Alignm E-value: | 6e-26 |
Alignm gaps (pig, cow): | 115, 24 |
Conread position: | 1-159 |
Cow position: | chr29:8004844-8004998 (view UCSC Genome Browser custom track) |
Alignm length: | 160 |
Alignm identity: | 120 |
Alignm E-value: | 2e-24 |
Alignm gaps (pig, cow): | 120, 52 |
Conread position: | 1-159 |
Cow position: | chr29:8862398-8862553 (view UCSC Genome Browser custom track) |
Alignm length: | 159 |
Alignm identity: | 115 |
Alignm E-value: | 1e-21 |
Alignm gaps (pig, cow): | 44, 0 |
Conread position: | 1-159 |
Cow position: | chr29:11053777-11053934 (view UCSC Genome Browser custom track) |
Alignm length: | 159 |
Alignm identity: | 116 |
Alignm E-value: | 2e-24 |
Alignm gaps (pig, cow): | 55, 0 |
Conread position: | 1-159 |
Cow position: | chr29:11397843-11397999 (view UCSC Genome Browser custom track) |
Alignm length: | 159 |
Alignm identity: | 114 |
Alignm E-value: | 1e-21 |
Alignm gaps (pig, cow): | 100, 0 |
Conread position: | 1-159 |
Cow position: | chr29:13867127-13867287 (view UCSC Genome Browser custom track) |
Alignm length: | 161 |
Alignm identity: | 120 |
Alignm E-value: | 2e-26 |
Alignm gaps (pig, cow): | 112, 0 |
Conread position: | 1-159 |
Cow position: | chr29:17297219-17297059 (view UCSC Genome Browser custom track) |
Alignm length: | 162 |
Alignm identity: | 123 |
Alignm E-value: | 7e-27 |
Alignm gaps (pig, cow): | 98, 129 |
Conread position: | 1-159 |
Cow position: | chr29:19821366-19821212 (view UCSC Genome Browser custom track) |
Alignm length: | 159 |
Alignm identity: | 119 |
Alignm E-value: | 2e-25 |
Alignm gaps (pig, cow): | 50, 0 |
Conread position: | 1-159 |
Cow position: | chr29:22936354-22936195 (view UCSC Genome Browser custom track) |
Alignm length: | 162 |
Alignm identity: | 125 |
Alignm E-value: | 8e-29 |
Alignm gaps (pig, cow): | 11, 67 |
Conread position: | 1-159 |
Cow position: | chr29:24952768-24952613 (view UCSC Genome Browser custom track) |
Alignm length: | 159 |
Alignm identity: | 114 |
Alignm E-value: | 1e-21 |
Alignm gaps (pig, cow): | 24, 0 |
Conread position: | 1-159 |
Cow position: | chr29:28993945-28993785 (view UCSC Genome Browser custom track) |
Alignm length: | 163 |
Alignm identity: | 118 |
Alignm E-value: | 3e-21 |
Alignm gaps (pig, cow): | 29, 123 |
Conread position: | 1-159 |
Cow position: | chr29:32521953-32521794 (view UCSC Genome Browser custom track) |
Alignm length: | 164 |
Alignm identity: | 122 |
Alignm E-value: | 3e-21 |
Alignm gaps (pig, cow): | 108, 26 |
Conread position: | 1-159 |
Cow position: | chr29:34745576-34745736 (view UCSC Genome Browser custom track) |
Alignm length: | 163 |
Alignm identity: | 124 |
Alignm E-value: | 2e-26 |
Alignm gaps (pig, cow): | 112, 10 |
Conread position: | 1-159 |
Cow position: | chr29:41530933-41530772 (view UCSC Genome Browser custom track) |
Alignm length: | 162 |
Alignm identity: | 125 |
Alignm E-value: | 3e-30 |
Alignm gaps (pig, cow): | 109, 0 |
Conread position: | 1-160 |
Cow position: | chr29:7103641-7103479 (view UCSC Genome Browser custom track) |
Alignm length: | 163 |
Alignm identity: | 121 |
Alignm E-value: | 6e-26 |
Alignm gaps (pig, cow): | 108, 0 |
Conread position: | 1-162 |
Cow position: | chr29:21443255-21443419 (view UCSC Genome Browser custom track) |
Alignm length: | 166 |
Alignm identity: | 120 |
Alignm E-value: | 4e-22 |
Alignm gaps (pig, cow): | 93, 101 |
Conread position: | 1-162 |
Cow position: | chr29:32926187-32926018 (view UCSC Genome Browser custom track) |
Alignm length: | 170 |
Alignm identity: | 123 |
Alignm E-value: | 4e-22 |
Alignm gaps (pig, cow): | 106, 0 |
Conread position: | 1-166 |
Cow position: | chr29:86928-87098 (view UCSC Genome Browser custom track) |
Alignm length: | 171 |
Alignm identity: | 122 |
Alignm E-value: | 1e-21 |
Alignm gaps (pig, cow): | 108, 0 |
Conread position: | 1-166 |
Cow position: | chr29:12625893-12626061 (view UCSC Genome Browser custom track) |
Alignm length: | 169 |
Alignm identity: | 120 |
Alignm E-value: | 4e-22 |
Alignm gaps (pig, cow): | 108, 0 |
Conread position: | 1-166 |
Cow position: | chr29:32894346-32894186 (view UCSC Genome Browser custom track) |
Alignm length: | 166 |
Alignm identity: | 122 |
Alignm E-value: | 2e-24 |
Alignm gaps (pig, cow): | 104, 0 |
Conread position: | 1-166 |
Cow position: | chr29:35292176-35292006 (view UCSC Genome Browser custom track) |
Alignm length: | 171 |
Alignm identity: | 131 |
Alignm E-value: | 9e-30 |
Alignm gaps (pig, cow): | 48, 0 |
Conread position: | 1-169 |
Cow position: | chr29:12025393-12025553 (view UCSC Genome Browser custom track) |
Alignm length: | 172 |
Alignm identity: | 131 |
Alignm E-value: | 1e-23 |
Alignm gaps (pig, cow): | 112, 16 |
Conread position: | 1-170 |
Cow position: | chr29:356404-356235 (view UCSC Genome Browser custom track) |
Alignm length: | 172 |
Alignm identity: | 122 |
Alignm E-value: | 4e-22 |
Alignm gaps (pig, cow): | 115, 155 |
Conread position: | 1-170 |
Cow position: | chr29:4520419-4520251 (view UCSC Genome Browser custom track) |
Alignm length: | 175 |
Alignm identity: | 130 |
Alignm E-value: | 4e-23 |
Alignm gaps (pig, cow): | 103, 51 |
Conread position: | 1-170 |
Cow position: | chr29:6293396-6293558 (view UCSC Genome Browser custom track) |
Alignm length: | 170 |
Alignm identity: | 130 |
Alignm E-value: | 2e-28 |
Alignm gaps (pig, cow): | 5, 0 |
Conread position: | 1-170 |
Cow position: | chr29:26017419-26017586 (view UCSC Genome Browser custom track) |
Alignm length: | 172 |
Alignm identity: | 123 |
Alignm E-value: | 1e-21 |
Alignm gaps (pig, cow): | 79, 138 |
Conread position: | 1-170 |
Cow position: | chr29:27873684-27873520 (view UCSC Genome Browser custom track) |
Alignm length: | 173 |
Alignm identity: | 131 |
Alignm E-value: | 5e-24 |
Alignm gaps (pig, cow): | 112, 93 |
Conread position: | 1-170 |
Cow position: | chr29:31814021-31813864 (view UCSC Genome Browser custom track) |
Alignm length: | 170 |
Alignm identity: | 130 |
Alignm E-value: | 5e-25 |
Alignm gaps (pig, cow): | 74, 0 |
Conread position: | 1-170 |
Cow position: | chr29:32290692-32290524 (view UCSC Genome Browser custom track) |
Alignm length: | 171 |
Alignm identity: | 125 |
Alignm E-value: | 6e-26 |
Alignm gaps (pig, cow): | 117, 154 |
Conread position: | 1-170 |
Cow position: | chr29:32799629-32799792 (view UCSC Genome Browser custom track) |
Alignm length: | 173 |
Alignm identity: | 127 |
Alignm E-value: | 3e-21 |
Alignm gaps (pig, cow): | 115, 49 |
Conread position: | 1-171 |
Cow position: | chr29:6015209-6015035 (view UCSC Genome Browser custom track) |
Alignm length: | 177 |
Alignm identity: | 131 |
Alignm E-value: | 5e-25 |
Alignm gaps (pig, cow): | 74, 66 |
Conread position: | 1-171 |
Cow position: | chr29:38581062-38580890 (view UCSC Genome Browser custom track) |
Alignm length: | 174 |
Alignm identity: | 135 |
Alignm E-value: | 1e-32 |
Alignm gaps (pig, cow): | 106, 47 |
Conread position: | 1-171 |
Cow position: | chr29:40298937-40299097 (view UCSC Genome Browser custom track) |
Alignm length: | 171 |
Alignm identity: | 132 |
Alignm E-value: | 2e-28 |
Alignm gaps (pig, cow): | 105, 0 |
Conread position: | 1-172 |
Cow position: | chr29:11647177-11647002 (view UCSC Genome Browser custom track) |
Alignm length: | 179 |
Alignm identity: | 132 |
Alignm E-value: | 4e-23 |
Alignm gaps (pig, cow): | 46, 40 |
Conread position: | 1-172 |
Cow position: | chr29:40583869-40583705 (view UCSC Genome Browser custom track) |
Alignm length: | 173 |
Alignm identity: | 129 |
Alignm E-value: | 2e-25 |
Alignm gaps (pig, cow): | 93, 55 |
Conread position: | 1-178 |
Cow position: | chr29:10235051-10235227 (view UCSC Genome Browser custom track) |
Alignm length: | 182 |
Alignm identity: | 130 |
Alignm E-value: | 3e-21 |
Alignm gaps (pig, cow): | 100, 52 |
Conread position: | 1-179 |
Cow position: | chr29:12783881-12784049 (view UCSC Genome Browser custom track) |
Alignm length: | 179 |
Alignm identity: | 130 |
Alignm E-value: | 4e-22 |
Alignm gaps (pig, cow): | 23, 0 |
Conread position: | 2-151 |
Cow position: | chr29:2056143-2055991 (view UCSC Genome Browser custom track) |
Alignm length: | 153 |
Alignm identity: | 112 |
Alignm E-value: | 4e-22 |
Alignm gaps (pig, cow): | 114, 0 |
Conread position: | 2-152 |
Cow position: | chr29:40994809-40994958 (view UCSC Genome Browser custom track) |
Alignm length: | 151 |
Alignm identity: | 112 |
Alignm E-value: | 2e-24 |
Alignm gaps (pig, cow): | 46, 0 |
Conread position: | 2-156 |
Cow position: | chr29:23874542-23874385 (view UCSC Genome Browser custom track) |
Alignm length: | 158 |
Alignm identity: | 116 |
Alignm E-value: | 1e-23 |
Alignm gaps (pig, cow): | 111, 0 |
Conread position: | 2-169 |
Cow position: | chr29:22519045-22519215 (view UCSC Genome Browser custom track) |
Alignm length: | 172 |
Alignm identity: | 127 |
Alignm E-value: | 2e-25 |
Alignm gaps (pig, cow): | 21, 8 |
Conread position: | 2-170 |
Cow position: | chr29:19428745-19428575 (view UCSC Genome Browser custom track) |
Alignm length: | 173 |
Alignm identity: | 126 |
Alignm E-value: | 4e-23 |
Alignm gaps (pig, cow): | 27, 157 |
Conread position: | 3-147 |
Cow position: | chr29:24252316-24252174 (view UCSC Genome Browser custom track) |
Alignm length: | 147 |
Alignm identity: | 111 |
Alignm E-value: | 1e-21 |
Alignm gaps (pig, cow): | 117, 48 |
Conread position: | 3-150 |
Cow position: | chr29:36830439-36830293 (view UCSC Genome Browser custom track) |
Alignm length: | 148 |
Alignm identity: | 107 |
Alignm E-value: | 3e-21 |
Alignm gaps (pig, cow): | 104, 0 |
Conread position: | 3-159 |
Cow position: | chr29:1022377-1022220 (view UCSC Genome Browser custom track) |
Alignm length: | 158 |
Alignm identity: | 119 |
Alignm E-value: | 7e-28 |
Alignm gaps (pig, cow): | 115, 0 |
Conread position: | 3-159 |
Cow position: | chr29:13639285-13639445 (view UCSC Genome Browser custom track) |
Alignm length: | 162 |
Alignm identity: | 123 |
Alignm E-value: | 6e-26 |
Alignm gaps (pig, cow): | 53, 141 |
Conread position: | 3-159 |
Cow position: | chr29:34297487-34297646 (view UCSC Genome Browser custom track) |
Alignm length: | 160 |
Alignm identity: | 115 |
Alignm E-value: | 3e-21 |
Alignm gaps (pig, cow): | 97, 0 |
Conread position: | 3-172 |
Cow position: | chr29:13127039-13127210 (view UCSC Genome Browser custom track) |
Alignm length: | 172 |
Alignm identity: | 123 |
Alignm E-value: | 2e-24 |
Alignm gaps (pig, cow): | 31, 0 |
Conread position: | 4-157 |
Cow position: | chr29:23825753-23825595 (view UCSC Genome Browser custom track) |
Alignm length: | 159 |
Alignm identity: | 119 |
Alignm E-value: | 5e-24 |
Alignm gaps (pig, cow): | 31, 0 |
Conread position: | 4-170 |
Cow position: | chr29:3685438-3685596 (view UCSC Genome Browser custom track) |
Alignm length: | 169 |
Alignm identity: | 126 |
Alignm E-value: | 3e-21 |
Alignm gaps (pig, cow): | 32, 25 |
Conread position: | 6-169 |
Cow position: | chr29:17668565-17668404 (view UCSC Genome Browser custom track) |
Alignm length: | 166 |
Alignm identity: | 121 |
Alignm E-value: | 4e-22 |
Alignm gaps (pig, cow): | 112, 35 |
Conread position: | 10-159 |
Cow position: | chr29:693934-694076 (view UCSC Genome Browser custom track) |
Alignm length: | 150 |
Alignm identity: | 114 |
Alignm E-value: | 1e-23 |
Alignm gaps (pig, cow): | 83, 0 |
Conread position: | 10-170 |
Cow position: | chr29:22778102-22778261 (view UCSC Genome Browser custom track) |
Alignm length: | 163 |
Alignm identity: | 120 |
Alignm E-value: | 4e-23 |
Alignm gaps (pig, cow): | 105, 38 |
Conread position: | 10-171 |
Cow position: | chr29:30441011-30440844 (view UCSC Genome Browser custom track) |
Alignm length: | 168 |
Alignm identity: | 123 |
Alignm E-value: | 1e-23 |
Alignm gaps (pig, cow): | 52, 0 |
Conread position: | 13-170 |
Cow position: | chr29:22068669-22068830 (view UCSC Genome Browser custom track) |
Alignm length: | 164 |
Alignm identity: | 122 |
Alignm E-value: | 5e-24 |
Alignm gaps (pig, cow): | 106, 146 |
Conread position: | 19-159 |
Cow position: | chr29:463589-463733 (view UCSC Genome Browser custom track) |
Alignm length: | 146 |
Alignm identity: | 115 |
Alignm E-value: | 2e-25 |
Alignm gaps (pig, cow): | 29, 21 |
Conread position: | 19-170 |
Cow position: | chr29:36183346-36183197 (view UCSC Genome Browser custom track) |
Alignm length: | 152 |
Alignm identity: | 110 |
Alignm E-value: | 1e-21 |
Alignm gaps (pig, cow): | 136, 0 |
Conread position: | 22-170 |
Cow position: | chr29:13487013-13486865 (view UCSC Genome Browser custom track) |
Alignm length: | 151 |
Alignm identity: | 118 |
Alignm E-value: | 2e-28 |
Alignm gaps (pig, cow): | 92, 135 |
Conread position: | 23-156 |
Cow position: | chr29:2071510-2071645 (view UCSC Genome Browser custom track) |
Alignm length: | 136 |
Alignm identity: | 107 |
Alignm E-value: | 6e-26 |
Alignm gaps (pig, cow): | 42, 0 |
Conread position: | 23-214 |
Cow position: | chr29:43183252-43183441 (view UCSC Genome Browser custom track) |
Alignm length: | 195 |
Alignm identity: | 136 |
Alignm E-value: | 3e-21 |
Alignm gaps (pig, cow): | 139, 92 |
Conread position: | 36-170 |
Cow position: | chr29:31926241-31926373 (view UCSC Genome Browser custom track) |
Alignm length: | 135 |
Alignm identity: | 103 |
Alignm E-value: | 4e-23 |
Alignm gaps (pig, cow): | 117, 0 |
Show alignments to all cow chromosomes.