Cow genome map

Conread name: Ss1.1-Tra1-TCH01D020047.5

Conread position: 1-113
Cow position: chr29:31934462-31934350 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 89
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-117
Cow position: chr29:4423356-4423471 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 92
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 109, 0

Conread position: 1-117
Cow position: chr29:5789111-5788996 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 38, 0

Conread position: 1-118
Cow position: chr29:5520402-5520519 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 97
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 1-125
Cow position: chr29:8686413-8686287 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 98
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 115, 0

Conread position: 1-146
Cow position: chr29:501280-501137 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 109
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 115, 80

Conread position: 1-147
Cow position: chr29:26263919-26263772 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 108
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 99, 0

Conread position: 1-147
Cow position: chr29:42630204-42630058 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 108
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 1-149
Cow position: chr29:41365192-41365047 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 111
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 37, 0

Conread position: 1-150
Cow position: chr29:29057258-29057113 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 116
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 56, 0

Conread position: 1-151
Cow position: chr29:5046736-5046585 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 112
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 116, 0

Conread position: 1-151
Cow position: chr29:17222496-17222346 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 114
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 115, 131

Conread position: 1-151
Cow position: chr29:23812956-23813105 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 110
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 126, 0

Conread position: 1-153
Cow position: chr29:109770-109628 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 117
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 52, 0

Conread position: 1-153
Cow position: chr29:868858-868706 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 114
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 1-153
Cow position: chr29:4085392-4085250 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 116
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 54, 0

Conread position: 1-153
Cow position: chr29:26653961-26654109 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 58, 102

Conread position: 1-153
Cow position: chr29:28195438-28195582 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 51, 0

Conread position: 1-153
Cow position: chr29:40633726-40633577 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 113
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 106, 0

Conread position: 1-153
Cow position: chr29:40853011-40852860 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 112
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 115, 0

Conread position: 1-156
Cow position: chr29:5210574-5210414 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 120
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 116, 41

Conread position: 1-156
Cow position: chr29:6286078-6286230 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 115
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 108, 0

Conread position: 1-156
Cow position: chr29:9912259-9912100 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 119
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 117, 0

Conread position: 1-159
Cow position: chr29:706873-707026 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 120
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 108, 50

Conread position: 1-159
Cow position: chr29:2262912-2263072 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 121
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 112, 50

Conread position: 1-159
Cow position: chr29:4051908-4052065 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 127
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 115, 24

Conread position: 1-159
Cow position: chr29:8004844-8004998 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 120
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 120, 52

Conread position: 1-159
Cow position: chr29:8862398-8862553 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 115
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 44, 0

Conread position: 1-159
Cow position: chr29:11053777-11053934 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 116
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 55, 0

Conread position: 1-159
Cow position: chr29:11397843-11397999 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 114
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 100, 0

Conread position: 1-159
Cow position: chr29:13867127-13867287 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 120
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 112, 0

Conread position: 1-159
Cow position: chr29:17297219-17297059 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 123
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 98, 129

Conread position: 1-159
Cow position: chr29:19821366-19821212 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 50, 0

Conread position: 1-159
Cow position: chr29:22936354-22936195 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 125
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 11, 67

Conread position: 1-159
Cow position: chr29:24952768-24952613 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 114
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 24, 0

Conread position: 1-159
Cow position: chr29:28993945-28993785 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 118
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 29, 123

Conread position: 1-159
Cow position: chr29:32521953-32521794 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 122
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 108, 26

Conread position: 1-159
Cow position: chr29:34745576-34745736 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 124
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 112, 10

Conread position: 1-159
Cow position: chr29:41530933-41530772 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 125
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 109, 0

Conread position: 1-160
Cow position: chr29:7103641-7103479 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 121
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 108, 0

Conread position: 1-162
Cow position: chr29:21443255-21443419 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 120
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 93, 101

Conread position: 1-162
Cow position: chr29:32926187-32926018 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 123
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 106, 0

Conread position: 1-166
Cow position: chr29:86928-87098 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 122
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 108, 0

Conread position: 1-166
Cow position: chr29:12625893-12626061 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 120
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 108, 0

Conread position: 1-166
Cow position: chr29:32894346-32894186 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 122
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 104, 0

Conread position: 1-166
Cow position: chr29:35292176-35292006 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 131
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 48, 0

Conread position: 1-169
Cow position: chr29:12025393-12025553 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 131
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 112, 16

Conread position: 1-170
Cow position: chr29:356404-356235 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 122
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 115, 155

Conread position: 1-170
Cow position: chr29:4520419-4520251 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 130
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 103, 51

Conread position: 1-170
Cow position: chr29:6293396-6293558 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 130
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 5, 0

Conread position: 1-170
Cow position: chr29:26017419-26017586 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 123
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 79, 138

Conread position: 1-170
Cow position: chr29:27873684-27873520 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 131
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 112, 93

Conread position: 1-170
Cow position: chr29:31814021-31813864 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 130
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 74, 0

Conread position: 1-170
Cow position: chr29:32290692-32290524 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 125
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 117, 154

Conread position: 1-170
Cow position: chr29:32799629-32799792 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 127
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 115, 49

Conread position: 1-171
Cow position: chr29:6015209-6015035 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 131
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 74, 66

Conread position: 1-171
Cow position: chr29:38581062-38580890 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 135
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 106, 47

Conread position: 1-171
Cow position: chr29:40298937-40299097 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 132
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 105, 0

Conread position: 1-172
Cow position: chr29:11647177-11647002 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 132
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 46, 40

Conread position: 1-172
Cow position: chr29:40583869-40583705 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 93, 55

Conread position: 1-178
Cow position: chr29:10235051-10235227 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 130
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 100, 52

Conread position: 1-179
Cow position: chr29:12783881-12784049 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 130
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 23, 0

Conread position: 2-151
Cow position: chr29:2056143-2055991 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 112
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 114, 0

Conread position: 2-152
Cow position: chr29:40994809-40994958 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 112
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 46, 0

Conread position: 2-156
Cow position: chr29:23874542-23874385 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 116
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 111, 0

Conread position: 2-169
Cow position: chr29:22519045-22519215 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 127
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 21, 8

Conread position: 2-170
Cow position: chr29:19428745-19428575 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 126
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 27, 157

Conread position: 3-147
Cow position: chr29:24252316-24252174 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 111
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 117, 48

Conread position: 3-150
Cow position: chr29:36830439-36830293 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 107
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 104, 0

Conread position: 3-159
Cow position: chr29:1022377-1022220 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 119
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 115, 0

Conread position: 3-159
Cow position: chr29:13639285-13639445 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 123
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 53, 141

Conread position: 3-159
Cow position: chr29:34297487-34297646 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 115
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 97, 0

Conread position: 3-172
Cow position: chr29:13127039-13127210 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 123
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 31, 0

Conread position: 4-157
Cow position: chr29:23825753-23825595 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 31, 0

Conread position: 4-170
Cow position: chr29:3685438-3685596 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 126
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 32, 25

Conread position: 6-169
Cow position: chr29:17668565-17668404 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 121
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 112, 35

Conread position: 10-159
Cow position: chr29:693934-694076 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 83, 0

Conread position: 10-170
Cow position: chr29:22778102-22778261 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 120
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 105, 38

Conread position: 10-171
Cow position: chr29:30441011-30440844 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 123
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 52, 0

Conread position: 13-170
Cow position: chr29:22068669-22068830 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 122
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 106, 146

Conread position: 19-159
Cow position: chr29:463589-463733 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 115
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 29, 21

Conread position: 19-170
Cow position: chr29:36183346-36183197 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 110
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 136, 0

Conread position: 22-170
Cow position: chr29:13487013-13486865 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 118
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 92, 135

Conread position: 23-156
Cow position: chr29:2071510-2071645 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 107
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 42, 0

Conread position: 23-214
Cow position: chr29:43183252-43183441 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 136
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 139, 92

Conread position: 36-170
Cow position: chr29:31926241-31926373 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 103
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 117, 0

Show alignments to all cow chromosomes.