Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01D020047.5 |
| Conread position: | 1-102 |
| Cow position: | chr5:3743433-3743332 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 84 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-117 |
| Cow position: | chr5:57062418-57062534 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-118 |
| Cow position: | chr5:4267781-4267664 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 94 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-125 |
| Cow position: | chr5:48867353-48867478 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 96 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 1-128 |
| Cow position: | chr5:57150777-57150651 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 99 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 70, 115 |
| Conread position: | 1-138 |
| Cow position: | chr5:46672316-46672178 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 1-138 |
| Cow position: | chr5:57230227-57230367 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 1-138 |
| Cow position: | chr5:61875648-61875515 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 115, 66 |
| Conread position: | 1-140 |
| Cow position: | chr5:52108158-52108296 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 105 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 1-142 |
| Cow position: | chr5:9369160-9369298 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 1-142 |
| Cow position: | chr5:45574254-45574399 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 1-145 |
| Cow position: | chr5:55019403-55019258 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 1-146 |
| Cow position: | chr5:57101412-57101561 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 106, 59 |
| Conread position: | 1-147 |
| Cow position: | chr5:26476907-26477057 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 105, 81 |
| Conread position: | 1-148 |
| Cow position: | chr5:58446918-58446769 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 1-149 |
| Cow position: | chr5:49501713-49501863 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 1-150 |
| Cow position: | chr5:56636006-56635860 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 1-151 |
| Cow position: | chr5:14550473-14550621 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 1-151 |
| Cow position: | chr5:14903957-14904112 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 1-151 |
| Cow position: | chr5:20128163-20128014 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 1-151 |
| Cow position: | chr5:20843283-20843440 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 1-151 |
| Cow position: | chr5:47316863-47317011 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 1-151 |
| Cow position: | chr5:57767874-57768021 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 127, 80 |
| Conread position: | 1-152 |
| Cow position: | chr5:45273390-45273541 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 105, 128 |
| Conread position: | 1-153 |
| Cow position: | chr5:18289233-18289088 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 109, 57 |
| Conread position: | 1-153 |
| Cow position: | chr5:50101263-50101420 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 1-153 |
| Cow position: | chr5:55795855-55796007 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 54, 131 |
| Conread position: | 1-153 |
| Cow position: | chr5:71494932-71494777 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 1-156 |
| Cow position: | chr5:4710041-4710192 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1-156 |
| Cow position: | chr5:11769380-11769224 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 106, 70 |
| Conread position: | 1-156 |
| Cow position: | chr5:18899084-18898931 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 108, 20 |
| Conread position: | 1-156 |
| Cow position: | chr5:35246999-35247157 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 64, 96 |
| Conread position: | 1-156 |
| Cow position: | chr5:52644969-52645124 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-156 |
| Cow position: | chr5:56153726-56153569 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 103, 38 |
| Conread position: | 1-156 |
| Cow position: | chr5:58555248-58555095 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 106, 133 |
| Conread position: | 1-159 |
| Cow position: | chr5:4031875-4032040 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 1-159 |
| Cow position: | chr5:21039872-21040021 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 1-159 |
| Cow position: | chr5:29353014-29353182 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 1-159 |
| Cow position: | chr5:37808552-37808717 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 89, 97 |
| Conread position: | 1-159 |
| Cow position: | chr5:44847910-44848068 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 69, 118 |
| Conread position: | 1-159 |
| Cow position: | chr5:52000329-52000174 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 117, 26 |
| Conread position: | 1-159 |
| Cow position: | chr5:59115493-59115339 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 1-159 |
| Cow position: | chr5:64523752-64523915 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 112, 142 |
| Conread position: | 1-159 |
| Cow position: | chr5:65776274-65776430 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 1-159 |
| Cow position: | chr5:66972540-66972380 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 1-161 |
| Cow position: | chr5:7723776-7723618 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 92, 97 |
| Conread position: | 1-161 |
| Cow position: | chr5:50575894-50575735 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 1-161 |
| Cow position: | chr5:55756304-55756475 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 1-163 |
| Cow position: | chr5:15471040-15470880 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 119, 45 |
| Conread position: | 1-164 |
| Cow position: | chr5:11668074-11668236 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 44, 40 |
| Conread position: | 1-164 |
| Cow position: | chr5:32696712-32696876 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 117, 26 |
| Conread position: | 1-164 |
| Cow position: | chr5:36855317-36855154 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 71, 156 |
| Conread position: | 1-166 |
| Cow position: | chr5:5855969-5855808 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 1-166 |
| Cow position: | chr5:27419618-27419784 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 94, 99 |
| Conread position: | 1-166 |
| Cow position: | chr5:30949804-30949971 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 116, 152 |
| Conread position: | 1-166 |
| Cow position: | chr5:62142787-62142619 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 1-168 |
| Cow position: | chr5:30805275-30805113 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-169 |
| Cow position: | chr5:27306415-27306245 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 94, 81 |
| Conread position: | 1-169 |
| Cow position: | chr5:35969643-35969477 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 97, 72 |
| Conread position: | 1-170 |
| Cow position: | chr5:458599-458434 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-170 |
| Cow position: | chr5:7057291-7057457 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 1-170 |
| Cow position: | chr5:13717459-13717624 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 1-170 |
| Cow position: | chr5:17028206-17028036 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 117, 153 |
| Conread position: | 1-170 |
| Cow position: | chr5:28035854-28035684 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 109, 45 |
| Conread position: | 1-170 |
| Cow position: | chr5:28224563-28224397 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 1-170 |
| Cow position: | chr5:33560623-33560790 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 114, 131 |
| Conread position: | 1-170 |
| Cow position: | chr5:37646433-37646605 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 109, 19 |
| Conread position: | 1-170 |
| Cow position: | chr5:41294191-41294024 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 108, 72 |
| Conread position: | 1-170 |
| Cow position: | chr5:43992435-43992265 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 117, 156 |
| Conread position: | 1-170 |
| Cow position: | chr5:51935300-51935135 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 1-170 |
| Cow position: | chr5:54311447-54311278 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 118, 154 |
| Conread position: | 1-170 |
| Cow position: | chr5:54350250-54350420 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 112, 157 |
| Conread position: | 1-170 |
| Cow position: | chr5:63234718-63234883 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 115, 66 |
| Conread position: | 1-170 |
| Cow position: | chr5:63426894-63427064 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 114, 153 |
| Conread position: | 1-171 |
| Cow position: | chr5:3771957-3771788 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 114, 66 |
| Conread position: | 1-171 |
| Cow position: | chr5:41713410-41713237 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 24, 76 |
| Conread position: | 1-171 |
| Cow position: | chr5:42064316-42064143 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 1-171 |
| Cow position: | chr5:45420026-45420194 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 1-171 |
| Cow position: | chr5:47323573-47323405 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1-171 |
| Cow position: | chr5:49474434-49474609 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 1-171 |
| Cow position: | chr5:51053538-51053708 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 58, 80 |
| Conread position: | 1-171 |
| Cow position: | chr5:53855817-53855638 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 1-171 |
| Cow position: | chr5:54060387-54060217 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 108, 71 |
| Conread position: | 1-171 |
| Cow position: | chr5:54767798-54767969 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 114, 87 |
| Conread position: | 1-171 |
| Cow position: | chr5:55929055-55928881 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 1-171 |
| Cow position: | chr5:58856213-58856044 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 1-171 |
| Cow position: | chr5:63987335-63987509 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 112, 45 |
| Conread position: | 1-171 |
| Cow position: | chr5:64140649-64140475 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 58, 155 |
| Conread position: | 1-171 |
| Cow position: | chr5:67212472-67212296 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 1-171 |
| Cow position: | chr5:67932361-67932524 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 105, 74 |
| Conread position: | 1-172 |
| Cow position: | chr5:22643121-22643285 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 132, 40 |
| Conread position: | 1-172 |
| Cow position: | chr5:23529171-23529339 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 106, 54 |
| Conread position: | 1-172 |
| Cow position: | chr5:29515394-29515556 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 129, 49 |
| Conread position: | 1-172 |
| Cow position: | chr5:41165199-41165025 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 1-172 |
| Cow position: | chr5:44752196-44752377 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 66, 177 |
| Conread position: | 1-172 |
| Cow position: | chr5:57156201-57156373 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 74, 126 |
| Conread position: | 1-172 |
| Cow position: | chr5:64758656-64758832 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 1-178 |
| Cow position: | chr5:44796622-44796798 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 108, 117 |
| Conread position: | 1-185 |
| Cow position: | chr5:4280559-4280374 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 46, 38 |
| Conread position: | 1-187 |
| Cow position: | chr5:40237322-40237136 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 106, 93 |
| Conread position: | 2-105 |
| Cow position: | chr5:26723557-26723455 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 85 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 2-156 |
| Cow position: | chr5:52001513-52001666 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 2-159 |
| Cow position: | chr5:16214797-16214636 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 2-159 |
| Cow position: | chr5:35126165-35126005 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 98, 129 |
| Conread position: | 2-159 |
| Cow position: | chr5:57737209-57737056 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 2-170 |
| Cow position: | chr5:63832038-63831870 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 89, 155 |
| Conread position: | 2-171 |
| Cow position: | chr5:74858685-74858514 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 59, 54 |
| Conread position: | 2-190 |
| Cow position: | chr5:28230274-28230085 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 71, 137 |
| Conread position: | 3-159 |
| Cow position: | chr5:29828156-29828001 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 73, 114 |
| Conread position: | 3-159 |
| Cow position: | chr5:60747172-60747326 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 116, 9 |
| Conread position: | 3-165 |
| Cow position: | chr5:36839069-36838903 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 113, 163 |
| Conread position: | 3-166 |
| Cow position: | chr5:55956015-55955852 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 114, 11 |
| Conread position: | 3-170 |
| Cow position: | chr5:2309447-2309613 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 106, 144 |
| Conread position: | 3-170 |
| Cow position: | chr5:47870933-47871100 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 117, 38 |
| Conread position: | 3-171 |
| Cow position: | chr5:34625069-34624897 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 3-171 |
| Cow position: | chr5:43737854-43738014 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 4-151 |
| Cow position: | chr5:55062035-55061885 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 4-152 |
| Cow position: | chr5:42845483-42845638 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 4-156 |
| Cow position: | chr5:31918750-31918600 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 4-169 |
| Cow position: | chr5:18574280-18574117 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 116, 35 |
| Conread position: | 5-171 |
| Cow position: | chr5:15479233-15479066 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 105, 149 |
| Conread position: | 6-171 |
| Cow position: | chr5:4617472-4617309 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 64, 45 |
| Conread position: | 7-156 |
| Cow position: | chr5:26262574-26262721 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 110, 41 |
| Conread position: | 7-159 |
| Cow position: | chr5:23678597-23678750 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 109, 45 |
| Conread position: | 7-171 |
| Cow position: | chr5:52165073-52165238 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 111, 28 |
| Conread position: | 11-170 |
| Cow position: | chr5:61840289-61840135 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 12-156 |
| Cow position: | chr5:61784627-61784773 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 13-160 |
| Cow position: | chr5:34887096-34887247 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 62, 137 |
| Conread position: | 14-170 |
| Cow position: | chr5:16509204-16509039 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 52, 152 |
| Conread position: | 18-159 |
| Cow position: | chr5:41951002-41951142 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 100, 77 |
| Conread position: | 19-159 |
| Cow position: | chr5:49685178-49685318 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 19-159 |
| Cow position: | chr5:73080298-73080152 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 20-159 |
| Cow position: | chr5:22446000-22445866 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 22-148 |
| Cow position: | chr5:30247432-30247557 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 22-166 |
| Cow position: | chr5:34528637-34528500 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 22-166 |
| Cow position: | chr5:57526834-57526973 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 22-170 |
| Cow position: | chr5:24349197-24349051 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 25-171 |
| Cow position: | chr5:75436799-75436947 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 80, 0 |
Show alignments to all cow chromosomes.