Cow genome map

Conread name: Ss1.1-Tra1-TCH01D020047.5

Conread position: 1-137
Cow position:
Alignm length: 137
Alignm identity: 107
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 116, 0

Conread position: 1-138
Cow position:
Alignm length: 141
Alignm identity: 112
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 65, 0

Conread position: 1-139
Cow position:
Alignm length: 139
Alignm identity: 103
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 115, 0

Conread position: 1-142
Cow position:
Alignm length: 143
Alignm identity: 110
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 117, 0

Conread position: 1-143
Cow position:
Alignm length: 147
Alignm identity: 108
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 116, 0

Conread position: 1-144
Cow position:
Alignm length: 144
Alignm identity: 112
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 116, 0

Conread position: 1-144
Cow position:
Alignm length: 147
Alignm identity: 108
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 115, 0

Conread position: 1-148
Cow position:
Alignm length: 151
Alignm identity: 113
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 119, 80

Conread position: 1-148
Cow position:
Alignm length: 151
Alignm identity: 113
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 113, 66

Conread position: 1-149
Cow position:
Alignm length: 149
Alignm identity: 110
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 117, 0

Conread position: 1-149
Cow position:
Alignm length: 151
Alignm identity: 113
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 111, 0

Conread position: 1-150
Cow position:
Alignm length: 150
Alignm identity: 115
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 5, 0

Conread position: 1-150
Cow position:
Alignm length: 150
Alignm identity: 116
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 65, 0

Conread position: 1-151
Cow position:
Alignm length: 152
Alignm identity: 110
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 43, 39

Conread position: 1-151
Cow position:
Alignm length: 155
Alignm identity: 121
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 64, 112

Conread position: 1-151
Cow position:
Alignm length: 151
Alignm identity: 111
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 112, 0

Conread position: 1-151
Cow position:
Alignm length: 153
Alignm identity: 113
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 118, 138

Conread position: 1-151
Cow position:
Alignm length: 152
Alignm identity: 115
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 118, 51

Conread position: 1-151
Cow position:
Alignm length: 151
Alignm identity: 112
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 1-151
Cow position:
Alignm length: 151
Alignm identity: 110
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 112, 0

Conread position: 1-151
Cow position:
Alignm length: 156
Alignm identity: 114
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 38, 0

Conread position: 1-152
Cow position:
Alignm length: 152
Alignm identity: 115
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 108, 0

Conread position: 1-152
Cow position:
Alignm length: 155
Alignm identity: 116
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 108, 0

Conread position: 1-152
Cow position:
Alignm length: 154
Alignm identity: 120
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 115, 137

Conread position: 1-153
Cow position:
Alignm length: 153
Alignm identity: 114
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 122, 0

Conread position: 1-153
Cow position:
Alignm length: 156
Alignm identity: 121
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 36, 0

Conread position: 1-153
Cow position:
Alignm length: 159
Alignm identity: 121
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 105, 141

Conread position: 1-156
Cow position:
Alignm length: 163
Alignm identity: 121
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 111, 148

Conread position: 1-156
Cow position:
Alignm length: 156
Alignm identity: 116
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 1-156
Cow position:
Alignm length: 159
Alignm identity: 121
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 115, 0

Conread position: 1-156
Cow position:
Alignm length: 156
Alignm identity: 113
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 112, 0

Conread position: 1-158
Cow position:
Alignm length: 160
Alignm identity: 118
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 118, 138

Conread position: 1-159
Cow position:
Alignm length: 164
Alignm identity: 119
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 36, 83

Conread position: 1-159
Cow position:
Alignm length: 159
Alignm identity: 123
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 13, 0

Conread position: 1-159
Cow position:
Alignm length: 163
Alignm identity: 126
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 106, 0

Conread position: 1-159
Cow position:
Alignm length: 166
Alignm identity: 123
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 106, 0

Conread position: 1-159
Cow position:
Alignm length: 159
Alignm identity: 121
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 66, 0

Conread position: 1-159
Cow position:
Alignm length: 159
Alignm identity: 126
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 121, 0

Conread position: 1-159
Cow position:
Alignm length: 160
Alignm identity: 117
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 120, 135

Conread position: 1-159
Cow position:
Alignm length: 159
Alignm identity: 116
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 113, 0

Conread position: 1-159
Cow position:
Alignm length: 162
Alignm identity: 123
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 109, 31

Conread position: 1-159
Cow position:
Alignm length: 159
Alignm identity: 118
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 105, 0

Conread position: 1-159
Cow position:
Alignm length: 168
Alignm identity: 125
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 106, 0

Conread position: 1-159
Cow position:
Alignm length: 161
Alignm identity: 125
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 105, 54

Conread position: 1-159
Cow position:
Alignm length: 163
Alignm identity: 119
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 109, 11

Conread position: 1-159
Cow position:
Alignm length: 164
Alignm identity: 128
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 112, 0

Conread position: 1-159
Cow position:
Alignm length: 160
Alignm identity: 118
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 21, 0

Conread position: 1-160
Cow position:
Alignm length: 166
Alignm identity: 128
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 34, 48

Conread position: 1-160
Cow position:
Alignm length: 160
Alignm identity: 119
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 39, 0

Conread position: 1-166
Cow position:
Alignm length: 169
Alignm identity: 122
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 49, 38

Conread position: 1-166
Cow position:
Alignm length: 170
Alignm identity: 126
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 105, 0

Conread position: 1-166
Cow position:
Alignm length: 171
Alignm identity: 132
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 111, 0

Conread position: 1-166
Cow position:
Alignm length: 166
Alignm identity: 117
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 109, 0

Conread position: 1-166
Cow position:
Alignm length: 167
Alignm identity: 124
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 108, 0

Conread position: 1-169
Cow position:
Alignm length: 169
Alignm identity: 128
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 1-169
Cow position:
Alignm length: 176
Alignm identity: 132
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 108, 70

Conread position: 1-169
Cow position:
Alignm length: 174
Alignm identity: 128
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 115, 18

Conread position: 1-169
Cow position:
Alignm length: 178
Alignm identity: 132
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 48, 0

Conread position: 1-170
Cow position:
Alignm length: 174
Alignm identity: 129
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 11, 17

Conread position: 1-170
Cow position:
Alignm length: 173
Alignm identity: 135
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 112, 157

Conread position: 1-170
Cow position:
Alignm length: 172
Alignm identity: 131
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 93, 99

Conread position: 1-170
Cow position:
Alignm length: 176
Alignm identity: 131
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 12, 146

Conread position: 1-170
Cow position:
Alignm length: 172
Alignm identity: 133
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 112, 51

Conread position: 1-170
Cow position:
Alignm length: 173
Alignm identity: 133
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 112, 47

Conread position: 1-170
Cow position:
Alignm length: 171
Alignm identity: 122
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 113, 123

Conread position: 1-170
Cow position:
Alignm length: 171
Alignm identity: 128
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 121, 114

Conread position: 1-170
Cow position:
Alignm length: 172
Alignm identity: 128
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 108, 128

Conread position: 1-170
Cow position:
Alignm length: 172
Alignm identity: 124
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 26, 0

Conread position: 1-170
Cow position:
Alignm length: 177
Alignm identity: 132
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 100, 50

Conread position: 1-170
Cow position:
Alignm length: 170
Alignm identity: 126
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 108, 0

Conread position: 1-170
Cow position:
Alignm length: 175
Alignm identity: 129
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 104, 159

Conread position: 1-170
Cow position:
Alignm length: 170
Alignm identity: 140
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 51, 0

Conread position: 1-170
Cow position:
Alignm length: 173
Alignm identity: 130
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 108, 51

Conread position: 1-170
Cow position:
Alignm length: 172
Alignm identity: 132
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 117, 109

Conread position: 1-170
Cow position:
Alignm length: 172
Alignm identity: 126
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 108, 26

Conread position: 1-170
Cow position:
Alignm length: 174
Alignm identity: 130
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 114, 46

Conread position: 1-170
Cow position:
Alignm length: 170
Alignm identity: 122
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 96, 0

Conread position: 1-170
Cow position:
Alignm length: 171
Alignm identity: 134
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 89, 155

Conread position: 1-170
Cow position:
Alignm length: 170
Alignm identity: 128
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 109, 0

Conread position: 1-170
Cow position:
Alignm length: 172
Alignm identity: 130
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 79, 157

Conread position: 1-170
Cow position:
Alignm length: 177
Alignm identity: 129
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 36, 161

Conread position: 1-170
Cow position:
Alignm length: 174
Alignm identity: 127
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 49, 130

Conread position: 1-170
Cow position:
Alignm length: 178
Alignm identity: 132
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 71, 162

Conread position: 1-170
Cow position:
Alignm length: 172
Alignm identity: 131
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 111, 9

Conread position: 1-170
Cow position:
Alignm length: 176
Alignm identity: 130
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 112, 51

Conread position: 1-170
Cow position:
Alignm length: 175
Alignm identity: 129
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 89, 99

Conread position: 1-170
Cow position:
Alignm length: 170
Alignm identity: 130
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 115, 0

Conread position: 1-170
Cow position:
Alignm length: 178
Alignm identity: 130
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 60, 45

Conread position: 1-171
Cow position:
Alignm length: 172
Alignm identity: 129
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 114, 0

Conread position: 1-171
Cow position:
Alignm length: 171
Alignm identity: 134
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 76, 0

Conread position: 1-171
Cow position:
Alignm length: 174
Alignm identity: 125
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 116, 66

Conread position: 1-171
Cow position:
Alignm length: 171
Alignm identity: 126
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 94, 0

Conread position: 1-171
Cow position:
Alignm length: 173
Alignm identity: 130
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 105, 11

Conread position: 1-171
Cow position:
Alignm length: 175
Alignm identity: 130
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 116, 41

Conread position: 1-171
Cow position:
Alignm length: 171
Alignm identity: 120
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 134, 0

Conread position: 1-171
Cow position:
Alignm length: 173
Alignm identity: 125
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 108, 38

Conread position: 1-171
Cow position:
Alignm length: 172
Alignm identity: 126
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 111, 0

Conread position: 2-150
Cow position:
Alignm length: 149
Alignm identity: 117
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 102, 0

Conread position: 2-159
Cow position:
Alignm length: 158
Alignm identity: 116
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 36, 0

Conread position: 2-159
Cow position:
Alignm length: 160
Alignm identity: 120
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 116, 0

Conread position: 2-170
Cow position:
Alignm length: 169
Alignm identity: 130
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 114, 0

Conread position: 2-171
Cow position:
Alignm length: 179
Alignm identity: 129
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 44, 0

Conread position: 2-171
Cow position:
Alignm length: 170
Alignm identity: 124
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 111, 0

Conread position: 3-150
Cow position:
Alignm length: 148
Alignm identity: 115
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 3-150
Cow position:
Alignm length: 149
Alignm identity: 111
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 112, 57

Conread position: 3-151
Cow position:
Alignm length: 149
Alignm identity: 108
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 116, 0

Conread position: 3-156
Cow position:
Alignm length: 157
Alignm identity: 120
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 103, 27

Conread position: 3-156
Cow position:
Alignm length: 154
Alignm identity: 117
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 90, 0

Conread position: 3-156
Cow position:
Alignm length: 154
Alignm identity: 121
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 48, 0

Conread position: 3-157
Cow position:
Alignm length: 159
Alignm identity: 123
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 36, 62

Conread position: 3-159
Cow position:
Alignm length: 160
Alignm identity: 125
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 107, 35

Conread position: 3-170
Cow position:
Alignm length: 170
Alignm identity: 120
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 20, 154

Conread position: 3-170
Cow position:
Alignm length: 168
Alignm identity: 127
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 27, 0

Conread position: 3-170
Cow position:
Alignm length: 169
Alignm identity: 125
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 116, 55

Conread position: 3-170
Cow position:
Alignm length: 170
Alignm identity: 124
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 113, 63

Conread position: 4-152
Cow position:
Alignm length: 151
Alignm identity: 120
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 102, 0

Conread position: 4-152
Cow position:
Alignm length: 149
Alignm identity: 107
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 4-166
Cow position:
Alignm length: 168
Alignm identity: 122
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 95, 127

Conread position: 5-159
Cow position:
Alignm length: 155
Alignm identity: 112
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 95, 0

Conread position: 6-159
Cow position:
Alignm length: 154
Alignm identity: 116
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 119, 0

Conread position: 6-170
Cow position:
Alignm length: 165
Alignm identity: 123
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 110, 0

Conread position: 6-179
Cow position:
Alignm length: 181
Alignm identity: 131
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 62, 0

Conread position: 7-170
Cow position:
Alignm length: 165
Alignm identity: 122
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 115, 41

Conread position: 8-156
Cow position:
Alignm length: 153
Alignm identity: 114
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 101, 52

Conread position: 9-153
Cow position:
Alignm length: 148
Alignm identity: 111
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 97, 126

Conread position: 9-159
Cow position:
Alignm length: 151
Alignm identity: 116
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 39, 0

Conread position: 10-171
Cow position:
Alignm length: 168
Alignm identity: 125
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 84, 90

Conread position: 11-156
Cow position:
Alignm length: 146
Alignm identity: 111
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 37, 0

Conread position: 12-156
Cow position:
Alignm length: 148
Alignm identity: 111
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 107, 0

Conread position: 12-171
Cow position:
Alignm length: 162
Alignm identity: 118
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 102, 127

Conread position: 19-144
Cow position:
Alignm length: 128
Alignm identity: 103
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 31, 0

Conread position: 19-170
Cow position:
Alignm length: 154
Alignm identity: 119
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 88, 138

Conread position: 22-159
Cow position:
Alignm length: 142
Alignm identity: 109
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 93, 0

Conread position: 22-159
Cow position:
Alignm length: 138
Alignm identity: 109
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 27-150
Cow position:
Alignm length: 124
Alignm identity: 97
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 70, 0

Conread position: 50-169
Cow position:
Alignm length: 120
Alignm identity: 94
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 105, 0

Show alignments to all cow chromosomes.