Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01D020047.5 |
| Conread position: | 1-118 |
| Cow position: | chrX:11762889-11763005 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 92 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 1-124 |
| Cow position: | chrX:29733480-29733603 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 94 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-125 |
| Cow position: | chrX:3806794-3806670 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-132 |
| Cow position: | chrX:42836293-42836164 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 1-133 |
| Cow position: | chrX:17966453-17966322 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 1-136 |
| Cow position: | chrX:25412019-25411883 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 1-139 |
| Cow position: | chrX:20743716-20743575 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 1-139 |
| Cow position: | chrX:32318418-32318276 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 1-143 |
| Cow position: | chrX:23498568-23498709 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 108, 50 |
| Conread position: | 1-143 |
| Cow position: | chrX:35268973-35268834 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 105, 54 |
| Conread position: | 1-147 |
| Cow position: | chrX:5872429-5872284 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 1-147 |
| Cow position: | chrX:17956802-17956660 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 1-148 |
| Cow position: | chrX:3130684-3130537 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-148 |
| Cow position: | chrX:11856542-11856392 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 1-148 |
| Cow position: | chrX:21004796-21004645 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 1-148 |
| Cow position: | chrX:31489632-31489484 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 113, 139 |
| Conread position: | 1-149 |
| Cow position: | chrX:19690327-19690181 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-150 |
| Cow position: | chrX:20881833-20881977 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 117, 26 |
| Conread position: | 1-150 |
| Cow position: | chrX:37489831-37489685 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 1-150 |
| Cow position: | chrX:42894038-42893879 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 74, 99 |
| Conread position: | 1-151 |
| Cow position: | chrX:4268952-4269100 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 59, 110 |
| Conread position: | 1-151 |
| Cow position: | chrX:10831376-10831532 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 42, 16 |
| Conread position: | 1-151 |
| Cow position: | chrX:27074939-27075086 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 1-151 |
| Cow position: | chrX:29553397-29553246 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 108, 140 |
| Conread position: | 1-151 |
| Cow position: | chrX:31442717-31442870 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 1-151 |
| Cow position: | chrX:35759824-35759978 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 1-151 |
| Cow position: | chrX:43527620-43527471 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 105, 111 |
| Conread position: | 1-151 |
| Cow position: | chrX:44054914-44054768 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 1-151 |
| Cow position: | chrX:46433603-46433453 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-152 |
| Cow position: | chrX:24331888-24331739 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 1-153 |
| Cow position: | chrX:7710427-7710579 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-153 |
| Cow position: | chrX:11082510-11082665 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 1-153 |
| Cow position: | chrX:21665129-21665281 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-153 |
| Cow position: | chrX:43730112-43730263 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 1-156 |
| Cow position: | chrX:1514307-1514454 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 91, 51 |
| Conread position: | 1-156 |
| Cow position: | chrX:6260037-6260192 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 112, 66 |
| Conread position: | 1-156 |
| Cow position: | chrX:15007037-15007193 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 1-156 |
| Cow position: | chrX:17888311-17888463 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 108, 52 |
| Conread position: | 1-156 |
| Cow position: | chrX:34565396-34565237 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 115, 36 |
| Conread position: | 1-156 |
| Cow position: | chrX:37910557-37910400 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 108, 147 |
| Conread position: | 1-156 |
| Cow position: | chrX:38728846-38728694 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 106, 94 |
| Conread position: | 1-156 |
| Cow position: | chrX:39220191-39220035 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 1-156 |
| Cow position: | chrX:40108406-40108560 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 60, 110 |
| Conread position: | 1-156 |
| Cow position: | chrX:41238243-41238397 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 111, 52 |
| Conread position: | 1-158 |
| Cow position: | chrX:41123171-41123016 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 114, 74 |
| Conread position: | 1-159 |
| Cow position: | chrX:917256-917412 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 1-159 |
| Cow position: | chrX:1615931-1616091 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 95, 52 |
| Conread position: | 1-159 |
| Cow position: | chrX:4109296-4109143 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 1-159 |
| Cow position: | chrX:4515802-4515637 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 71, 23 |
| Conread position: | 1-159 |
| Cow position: | chrX:6690148-6690303 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 1-159 |
| Cow position: | chrX:15147085-15147234 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 1-159 |
| Cow position: | chrX:19943124-19943284 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 105, 34 |
| Conread position: | 1-159 |
| Cow position: | chrX:23561970-23561814 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 43, 109 |
| Conread position: | 1-159 |
| Cow position: | chrX:31294460-31294610 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 1-159 |
| Cow position: | chrX:38094408-38094568 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 93, 51 |
| Conread position: | 1-159 |
| Cow position: | chrX:38936812-38936650 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 70, 64 |
| Conread position: | 1-159 |
| Cow position: | chrX:41027271-41027109 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 1-159 |
| Cow position: | chrX:46072705-46072867 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 1-159 |
| Cow position: | chrX:46532383-46532548 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 1-159 |
| Cow position: | chrX:46587934-46587773 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 1-160 |
| Cow position: | chrX:41878822-41878980 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 107, 52 |
| Conread position: | 1-162 |
| Cow position: | chrX:23188672-23188827 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 1-164 |
| Cow position: | chrX:23113397-23113224 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 1-166 |
| Cow position: | chrX:5679460-5679619 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 1-166 |
| Cow position: | chrX:23562744-23562581 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 109, 118 |
| Conread position: | 1-166 |
| Cow position: | chrX:42247070-42247240 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 1-169 |
| Cow position: | chrX:4043755-4043917 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1-169 |
| Cow position: | chrX:6407655-6407487 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 112, 38 |
| Conread position: | 1-169 |
| Cow position: | chrX:11073079-11073247 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 105, 148 |
| Conread position: | 1-169 |
| Cow position: | chrX:27261304-27261131 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1-170 |
| Cow position: | chrX:878268-878439 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 103, 158 |
| Conread position: | 1-170 |
| Cow position: | chrX:5900574-5900413 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 1-170 |
| Cow position: | chrX:7278023-7277855 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 1-170 |
| Cow position: | chrX:7351409-7351245 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 110, 40 |
| Conread position: | 1-170 |
| Cow position: | chrX:7722100-7721931 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 114, 52 |
| Conread position: | 1-170 |
| Cow position: | chrX:11614805-11614644 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-170 |
| Cow position: | chrX:11633794-11633624 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 114, 156 |
| Conread position: | 1-170 |
| Cow position: | chrX:11717671-11717844 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 115, 160 |
| Conread position: | 1-170 |
| Cow position: | chrX:17662486-17662649 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-170 |
| Cow position: | chrX:21566519-21566348 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 112, 156 |
| Conread position: | 1-170 |
| Cow position: | chrX:22914930-22915092 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 1-170 |
| Cow position: | chrX:23513905-23514071 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 112, 51 |
| Conread position: | 1-170 |
| Cow position: | chrX:25037099-25036931 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 89, 97 |
| Conread position: | 1-170 |
| Cow position: | chrX:27393914-27394076 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 1-170 |
| Cow position: | chrX:27511540-27511371 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 140, 156 |
| Conread position: | 1-170 |
| Cow position: | chrX:28134450-28134289 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 1-170 |
| Cow position: | chrX:32977973-32978135 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 1-170 |
| Cow position: | chrX:34503032-34502866 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 1-170 |
| Cow position: | chrX:38549559-38549391 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 63, 117 |
| Conread position: | 1-170 |
| Cow position: | chrX:40680726-40680555 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 112, 156 |
| Conread position: | 1-170 |
| Cow position: | chrX:42492411-42492575 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 1-170 |
| Cow position: | chrX:42855570-42855399 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 108, 156 |
| Conread position: | 1-171 |
| Cow position: | chrX:9365564-9365734 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 114, 135 |
| Conread position: | 1-171 |
| Cow position: | chrX:10411874-10412045 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 1-171 |
| Cow position: | chrX:10959283-10959456 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 1-171 |
| Cow position: | chrX:14973634-14973797 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 1-171 |
| Cow position: | chrX:20339782-20339948 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 114, 18 |
| Conread position: | 1-171 |
| Cow position: | chrX:27705698-27705528 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 118, 96 |
| Conread position: | 1-171 |
| Cow position: | chrX:28878062-28878228 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 129, 108 |
| Conread position: | 1-171 |
| Cow position: | chrX:29601716-29601889 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 1-171 |
| Cow position: | chrX:31250500-31250328 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 105, 129 |
| Conread position: | 1-171 |
| Cow position: | chrX:31252519-31252359 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 1-171 |
| Cow position: | chrX:37119705-37119535 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 112, 66 |
| Conread position: | 1-171 |
| Cow position: | chrX:38964220-38964046 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 1-171 |
| Cow position: | chrX:42235412-42235587 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 1-172 |
| Cow position: | chrX:29121159-29120986 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 1-172 |
| Cow position: | chrX:29680149-29680320 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-172 |
| Cow position: | chrX:44961863-44961689 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 1-178 |
| Cow position: | chrX:30133206-30133386 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 112, 130 |
| Conread position: | 1-182 |
| Cow position: | chrX:32623683-32623495 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 1-191 |
| Cow position: | chrX:31626866-31627059 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 112, 47 |
| Conread position: | 2-111 |
| Cow position: | chrX:24170619-24170727 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 88 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 2-151 |
| Cow position: | chrX:6265488-6265638 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 102, 47 |
| Conread position: | 2-152 |
| Cow position: | chrX:18964718-18964865 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 107, 50 |
| Conread position: | 2-153 |
| Cow position: | chrX:42498938-42499090 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 105, 15 |
| Conread position: | 2-159 |
| Cow position: | chrX:21328024-21327859 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 2-159 |
| Cow position: | chrX:22624587-22624426 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 2-159 |
| Cow position: | chrX:29115816-29115664 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 2-159 |
| Cow position: | chrX:29194340-29194186 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 2-159 |
| Cow position: | chrX:41111827-41111674 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 2-166 |
| Cow position: | chrX:33001016-33000849 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 2-169 |
| Cow position: | chrX:10516364-10516193 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 2-170 |
| Cow position: | chrX:32821139-32820974 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 113, 66 |
| Conread position: | 2-171 |
| Cow position: | chrX:6278387-6278559 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 2-171 |
| Cow position: | chrX:18694820-18694983 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 2-171 |
| Cow position: | chrX:27228237-27228069 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 116, 99 |
| Conread position: | 2-178 |
| Cow position: | chrX:35885616-35885793 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 97, 137 |
| Conread position: | 2-198 |
| Cow position: | chrX:15820705-15820510 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 189, 40 |
| Conread position: | 3-129 |
| Cow position: | chrX:42449904-42450033 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 3-150 |
| Cow position: | chrX:48558856-48558709 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-152 |
| Cow position: | chrX:7646361-7646213 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 3-159 |
| Cow position: | chrX:161522-161366 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 101, 138 |
| Conread position: | 3-159 |
| Cow position: | chrX:12095662-12095820 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 76, 121 |
| Conread position: | 3-166 |
| Cow position: | chrX:31515284-31515115 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 53, 155 |
| Conread position: | 3-169 |
| Cow position: | chrX:26625561-26625733 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 3-170 |
| Cow position: | chrX:33640085-33639917 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 106, 155 |
| Conread position: | 3-171 |
| Cow position: | chrX:36514782-36514953 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 4-151 |
| Cow position: | chrX:29544768-29544914 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 4-170 |
| Cow position: | chrX:4279009-4279173 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 120, 112 |
| Conread position: | 4-171 |
| Cow position: | chrX:14955660-14955823 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 4-171 |
| Cow position: | chrX:20168667-20168499 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 4-172 |
| Cow position: | chrX:29289687-29289519 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 124, 115 |
| Conread position: | 5-145 |
| Cow position: | chrX:37129377-37129234 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 5-159 |
| Cow position: | chrX:41068833-41068674 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 6-156 |
| Cow position: | chrX:1499772-1499621 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 6-171 |
| Cow position: | chrX:13382431-13382271 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 108, 35 |
| Conread position: | 7-152 |
| Cow position: | chrX:47186218-47186361 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 37, 33 |
| Conread position: | 9-169 |
| Cow position: | chrX:27680502-27680340 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 101, 150 |
| Conread position: | 11-148 |
| Cow position: | chrX:4645811-4645948 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 11-153 |
| Cow position: | chrX:45993332-45993182 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 26, 99 |
| Conread position: | 12-159 |
| Cow position: | chrX:21593382-21593241 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 13-166 |
| Cow position: | chrX:27685349-27685194 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 18-151 |
| Cow position: | chrX:6559353-6559484 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 19-170 |
| Cow position: | chrX:24365727-24365881 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 87, 139 |
| Conread position: | 19-171 |
| Cow position: | chrX:34402094-34401939 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 90, 76 |
| Conread position: | 22-151 |
| Cow position: | chrX:15815175-15815046 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 24-171 |
| Cow position: | chrX:1572050-1572196 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 24-171 |
| Cow position: | chrX:43973634-43973485 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 25-170 |
| Cow position: | chrX:6488664-6488521 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 133, 27 |
| Conread position: | 28-171 |
| Cow position: | chrX:5638084-5638227 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 30-164 |
| Cow position: | chrX:16416592-16416458 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 90, 67 |
| Conread position: | 34-170 |
| Cow position: | chrX:11589509-11589643 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 121, 0 |
Show alignments to all cow chromosomes.