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Cow genome map

           
Conread name:
           
Ss1.1-Tra1-TCH01E040098.5
        

               
Conread position:
               
1-145
               

               
Cow position:
               
chr1:22864014-22864162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
49, 99
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr1:40307968-40307763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
63, 145
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr1:33895583-33895337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
49, 153
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chr1:38387739-38387983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chr1:52233208-52233463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
51, 9
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr1:45097610-45097359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 130
               

               
Conread position:
               
1-270
               

               
Cow position:
               
chr1:40953614-40953344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 99
               

               
Conread position:
               
1-270
               

               
Cow position:
               
chr1:42290299-42290037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
51, 149
               

               
Conread position:
               
1-270
               

               
Cow position:
               
chr1:69536808-69536536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 64
               

               
Conread position:
               
1-270
               

               
Cow position:
               
chr1:89809717-89809993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 45
               

               
Conread position:
               
1-270
               

               
Cow position:
               
chr1:97123736-97123466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 110
               

               
Conread position:
               
1-287
               

               
Cow position:
               
chr1:69766368-69766088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
49, 104
               

               
Conread position:
               
1-287
               

               
Cow position:
               
chr1:89770779-89771060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 84
               

               
Conread position:
               
1-295
               

               
Cow position:
               
chr1:29361912-29361614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
49, 146
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr1:62853938-62854251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
287, 48
               

               
Conread position:
               
1-370
               

               
Cow position:
               
chr1:56489743-56489380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 153
               

               
Conread position:
               
1-440
               

               
Cow position:
               
chr1:97226798-97227233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 151
               

               
Conread position:
               
1-441
               

               
Cow position:
               
chr1:98661392-98661815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
97, 30
               

               
Conread position:
               
1-466
               

               
Cow position:
               
chr1:1461423-1461873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 156
               

               
Conread position:
               
1-503
               

               
Cow position:
               
chr1:25887252-25887718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 46
               

               
Conread position:
               
1-614
               

               
Cow position:
               
chr1:82918758-82919346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
627
               

               
Alignm identity:
               
432
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 15
               

               
Conread position:
               
1-629
               

               
Cow position:
               
chr1:33711967-33711347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
646
               

               
Alignm identity:
               
460
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 87
               

               
Conread position:
               
1-631
               

               
Cow position:
               
chr1:28801520-28802127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
646
               

               
Alignm identity:
               
463
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 155
               

               
Conread position:
               
1-631
               

               
Cow position:
               
chr1:88635275-88634676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
641
               

               
Alignm identity:
               
465
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
465, 134
               

               
Conread position:
               
1-631
               

               
Cow position:
               
chr1:89899798-89900399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
645
               

               
Alignm identity:
               
442
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 110
               

               
Conread position:
               
1-633
               

               
Cow position:
               
chr1:87244697-87244084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
641
               

               
Alignm identity:
               
458
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
451, 51
               

               
Conread position:
               
1-663
               

               
Cow position:
               
chr1:40053259-40052567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
700
               

               
Alignm identity:
               
460
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 153
               

               
Conread position:
               
1-671
               

               
Cow position:
               
chr1:6708190-6708891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
705
               

               
Alignm identity:
               
455
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 141
               

               
Conread position:
               
1-682
               

               
Cow position:
               
chr1:89740341-89741013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
701
               

               
Alignm identity:
               
518
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 144
               

               
Conread position:
               
1-706
               

               
Cow position:
               
chr1:56163230-56162499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
738
               

               
Alignm identity:
               
479
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 138
               

               
Conread position:
               
1-751
               

               
Cow position:
               
chr1:61308906-61308141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
783
               

               
Alignm identity:
               
503
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 153
               

               
Conread position:
               
1-834
               

               
Cow position:
               
chr1:21087318-21086445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
877
               

               
Alignm identity:
               
565
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 101
               

               
Conread position:
               
1-883
               

               
Cow position:
               
chr1:67835234-67836136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
916
               

               
Alignm identity:
               
584
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 153
               

               
Conread position:
               
1-884
               

               
Cow position:
               
chr1:40684786-40685702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
928
               

               
Alignm identity:
               
591
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 167
               

               
Conread position:
               
1-888
               

               
Cow position:
               
chr1:39543675-39542758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
921
               

               
Alignm identity:
               
592
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 153
               

               
Conread position:
               
1-889
               

               
Cow position:
               
chr1:8554232-8553308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
930
               

               
Alignm identity:
               
581
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 153
               

               
Conread position:
               
1-889
               

               
Cow position:
               
chr1:17036654-17037560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
925
               

               
Alignm identity:
               
596
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 153
               

               
Conread position:
               
1-889
               

               
Cow position:
               
chr1:20828793-20827899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
912
               

               
Alignm identity:
               
567
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 153
               

               
Conread position:
               
1-889
               

               
Cow position:
               
chr1:30023287-30024209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
927
               

               
Alignm identity:
               
584
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 153
               

               
Conread position:
               
1-889
               

               
Cow position:
               
chr1:53198697-53197774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
927
               

               
Alignm identity:
               
590
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 174
               

               
Conread position:
               
1-889
               

               
Cow position:
               
chr1:56723059-56722105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
960
               

               
Alignm identity:
               
621
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 91
               

               
Conread position:
               
1-889
               

               
Cow position:
               
chr1:79637024-79637927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
911
               

               
Alignm identity:
               
641
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 58
               

               
Conread position:
               
1-889
               

               
Cow position:
               
chr1:80359265-80360184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
926
               

               
Alignm identity:
               
594
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 150
               

               
Conread position:
               
1-889
               

               
Cow position:
               
chr1:82564408-82563498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
920
               

               
Alignm identity:
               
601
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 143
               

               
Conread position:
               
1-889
               

               
Cow position:
               
chr1:89425491-89424574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
926
               

               
Alignm identity:
               
584
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 33
               

               
Conread position:
               
1-891
               

               
Cow position:
               
chr1:57656454-57655539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
926
               

               
Alignm identity:
               
610
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
212, 53
               

               
Conread position:
               
1-911
               

               
Cow position:
               
chr1:11292200-11293146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
950
               

               
Alignm identity:
               
608
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 153
               

               
Conread position:
               
1-911
               

               
Cow position:
               
chr1:17012832-17013769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
943
               

               
Alignm identity:
               
606
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 153
               

               
Conread position:
               
1-911
               

               
Cow position:
               
chr1:31396317-31395390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
941
               

               
Alignm identity:
               
606
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 143
               

               
Conread position:
               
1-911
               

               
Cow position:
               
chr1:33851183-33850218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
968
               

               
Alignm identity:
               
609
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 844
               

               
Conread position:
               
1-911
               

               
Cow position:
               
chr1:55276582-55277509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
947
               

               
Alignm identity:
               
612
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 153
               

               
Conread position:
               
1-911
               

               
Cow position:
               
chr1:59210233-59211176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
952
               

               
Alignm identity:
               
617
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 33
               

               
Conread position:
               
1-911
               

               
Cow position:
               
chr1:62925517-62924590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
933
               

               
Alignm identity:
               
589
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 153
               

               
Conread position:
               
1-911
               

               
Cow position:
               
chr1:79920823-79921766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
951
               

               
Alignm identity:
               
612
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 153
               

               
Conread position:
               
1-911
               

               
Cow position:
               
chr1:85791593-85790665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
941
               

               
Alignm identity:
               
595
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 100
               

               
Conread position:
               
1-911
               

               
Cow position:
               
chr1:87449857-87448915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
949
               

               
Alignm identity:
               
601
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 146
               

               
Conread position:
               
2-223
               

               
Cow position:
               
chr1:56144428-56144650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
38, 144
               

               
Conread position:
               
2-267
               

               
Cow position:
               
chr1:87969250-87968986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
41, 46
               

               
Conread position:
               
2-326
               

               
Cow position:
               
chr1:77163682-77163358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
61, 167
               

               
Conread position:
               
2-430
               

               
Cow position:
               
chr1:28872980-28872562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 152
               

               
Conread position:
               
2-468
               

               
Cow position:
               
chr1:5318663-5318224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
47, 110
               

               
Conread position:
               
2-493
               

               
Cow position:
               
chr1:5501878-5501396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 145
               

               
Conread position:
               
2-496
               

               
Cow position:
               
chr1:62244745-62245235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 115
               

               
Conread position:
               
2-503
               

               
Cow position:
               
chr1:25180128-25180623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 155
               

               
Conread position:
               
2-503
               

               
Cow position:
               
chr1:85881645-85881159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 122
               

               
Conread position:
               
2-503
               

               
Cow position:
               
chr1:93854423-93853929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 152
               

               
Conread position:
               
2-506
               

               
Cow position:
               
chr1:69922560-69923059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 144
               

               
Conread position:
               
2-613
               

               
Cow position:
               
chr1:62805903-62806511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
630
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 152
               

               
Conread position:
               
2-614
               

               
Cow position:
               
chr1:79335902-79336504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
630
               

               
Alignm identity:
               
439
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 151
               

               
Conread position:
               
2-634
               

               
Cow position:
               
chr1:3386104-3386726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
643
               

               
Alignm identity:
               
449
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 151
               

               
Conread position:
               
2-634
               

               
Cow position:
               
chr1:8824962-8824329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
654
               

               
Alignm identity:
               
444
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 149
               

               
Conread position:
               
2-634
               

               
Cow position:
               
chr1:22000053-22000678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
647
               

               
Alignm identity:
               
449
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 153
               

               
Conread position:
               
2-634
               

               
Cow position:
               
chr1:69402895-69402262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
653
               

               
Alignm identity:
               
449
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 145
               

               
Conread position:
               
2-634
               

               
Cow position:
               
chr1:72186970-72187601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
648
               

               
Alignm identity:
               
449
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 150
               

               
Conread position:
               
2-634
               

               
Cow position:
               
chr1:76545640-76546272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
652
               

               
Alignm identity:
               
450
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 149
               

               
Conread position:
               
2-634
               

               
Cow position:
               
chr1:86699315-86699951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
654
               

               
Alignm identity:
               
446
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 152
               

               
Conread position:
               
2-634
               

               
Cow position:
               
chr1:100597479-100598111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
650
               

               
Alignm identity:
               
453
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 152
               

               
Conread position:
               
2-682
               

               
Cow position:
               
chr1:33550825-33550147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
697
               

               
Alignm identity:
               
482
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 151
               

               
Conread position:
               
2-889
               

               
Cow position:
               
chr1:91898903-91897993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
924
               

               
Alignm identity:
               
597
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 152
               

               
Conread position:
               
2-891
               

               
Cow position:
               
chr1:102549133-102548186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
954
               

               
Alignm identity:
               
602
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 253
               

               
Conread position:
               
6-287
               

               
Cow position:
               
chr1:57101318-57101041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
167, 39
               

               
Conread position:
               
6-911
               

               
Cow position:
               
chr1:43020024-43019086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
946
               

               
Alignm identity:
               
601
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 148
               

               
Conread position:
               
7-190
               

               
Cow position:
               
chr1:99349120-99349307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
45, 140
               

               
Conread position:
               
7-889
               

               
Cow position:
               
chr1:71562679-71563586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
923
               

               
Alignm identity:
               
594
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 50
               

               
Conread position:
               
10-354
               

               
Cow position:
               
chr1:59933449-59933089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
13, 74
               

               
Conread position:
               
10-613
               

               
Cow position:
               
chr1:49974296-49974900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
625
               

               
Alignm identity:
               
430
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 144
               

               
Conread position:
               
10-1146
               

               
Cow position:
               
chr1:67286385-67285260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
1160
               

               
Alignm identity:
               
841
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 153
               

               
Conread position:
               
11-140
               

               
Cow position:
               
chr1:82407451-82407579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
11-251
               

               
Cow position:
               
chr1:68218949-68219197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
43, 129
               

               
Conread position:
               
11-264
               

               
Cow position:
               
chr1:57661434-57661181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
53, 101
               

               
Conread position:
               
11-285
               

               
Cow position:
               
chr1:76703482-76703748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
11-291
               

               
Cow position:
               
chr1:72656874-72656595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 12
               

               
Conread position:
               
11-327
               

               
Cow position:
               
chr1:68607654-68607972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 135
               

               
Conread position:
               
11-336
               

               
Cow position:
               
chr1:18014296-18014624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
38, 55
               

               
Conread position:
               
11-348
               

               
Cow position:
               
chr1:20988654-20988324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
60, 149
               

               
Conread position:
               
11-370
               

               
Cow position:
               
chr1:30027649-30027987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 141
               

               
Conread position:
               
11-434
               

               
Cow position:
               
chr1:67902528-67902956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 125
               

               
Conread position:
               
11-496
               

               
Cow position:
               
chr1:102435133-102435612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 144
               

               
Conread position:
               
11-501
               

               
Cow position:
               
chr1:79457073-79457557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 143
               

               
Conread position:
               
11-503
               

               
Cow position:
               
chr1:42736351-42735865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 133
               

               
Conread position:
               
11-518
               

               
Cow position:
               
chr1:56194038-56194540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 21
               

               
Conread position:
               
11-533
               

               
Cow position:
               
chr1:13253544-13254048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 74
               

               
Conread position:
               
11-534
               

               
Cow position:
               
chr1:72981161-72980661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 132
               

               
Conread position:
               
11-566
               

               
Cow position:
               
chr1:57367238-57367792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 143
               

               
Conread position:
               
11-582
               

               
Cow position:
               
chr1:18406296-18406843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
587
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 162
               

               
Conread position:
               
11-585
               

               
Cow position:
               
chr1:38414696-38414163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
586
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
455, 44
               

               
Conread position:
               
11-631
               

               
Cow position:
               
chr1:101858090-101858682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
635
               

               
Alignm identity:
               
454
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 88
               

               
Conread position:
               
11-633
               

               
Cow position:
               
chr1:101149729-101149134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
627
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
459, 41
               

               
Conread position:
               
11-634
               

               
Cow position:
               
chr1:55776048-55775425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
644
               

               
Alignm identity:
               
443
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 143
               

               
Conread position:
               
11-634
               

               
Cow position:
               
chr1:58335730-58335110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
640
               

               
Alignm identity:
               
445
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 143
               

               
Conread position:
               
11-634
               

               
Cow position:
               
chr1:63605888-63606513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
642
               

               
Alignm identity:
               
450
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 144
               

               
Conread position:
               
11-634
               

               
Cow position:
               
chr1:76623054-76623679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
644
               

               
Alignm identity:
               
448
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 140
               

               
Conread position:
               
11-634
               

               
Cow position:
               
chr1:85780884-85781503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
641
               

               
Alignm identity:
               
437
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 341
               

               
Conread position:
               
11-634
               

               
Cow position:
               
chr1:88130652-88130033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
639
               

               
Alignm identity:
               
446
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 136
               

               
Conread position:
               
11-654
               

               
Cow position:
               
chr1:17941917-17942578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
664
               

               
Alignm identity:
               
432
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 146
               

               
Conread position:
               
11-889
               

               
Cow position:
               
chr1:18880499-18881402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
913
               

               
Alignm identity:
               
571
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
343, 39
               

               
Conread position:
               
11-889
               

               
Cow position:
               
chr1:91718740-91719656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
920
               

               
Alignm identity:
               
585
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 390
               

               
Conread position:
               
11-1009
               

               
Cow position:
               
chr1:18244494-18245484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
1016
               

               
Alignm identity:
               
735
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 144
               

               
Conread position:
               
11-1136
               

               
Cow position:
               
chr1:40513604-40514709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
1157
               

               
Alignm identity:
               
799
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 126
               

               
Conread position:
               
12-252
               

               
Cow position:
               
chr1:54365928-54366161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
52, 86
               

               
Conread position:
               
12-255
               

               
Cow position:
               
chr1:87207524-87207775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 40
               

               
Conread position:
               
12-262
               

               
Cow position:
               
chr1:59674382-59674130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 134
               

               
Conread position:
               
12-343
               

               
Cow position:
               
chr1:42176507-42176820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
249, 115
               

               
Conread position:
               
12-400
               

               
Cow position:
               
chr1:102555979-102555605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 76
               

               
Conread position:
               
12-410
               

               
Cow position:
               
chr1:31366184-31366589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 143
               

               
Conread position:
               
12-503
               

               
Cow position:
               
chr1:25549956-25549472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 142
               

               
Conread position:
               
12-633
               

               
Cow position:
               
chr1:13645624-13645022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
641
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 271
               

               
Conread position:
               
12-634
               

               
Cow position:
               
chr1:57567843-57567232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
636
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 142
               

               
Conread position:
               
12-634
               

               
Cow position:
               
chr1:76752760-76753380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
640
               

               
Alignm identity:
               
444
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 60
               

               
Conread position:
               
13-243
               

               
Cow position:
               
chr1:80556164-80556390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
51, 13
               

               
Conread position:
               
13-269
               

               
Cow position:
               
chr1:52918727-52918973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
22, 18
               

               
Conread position:
               
13-286
               

               
Cow position:
               
chr1:29950416-29950683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
23, 11
               

               
Conread position:
               
13-510
               

               
Cow position:
               
chr1:34689231-34688759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 82
               

               
Conread position:
               
13-629
               

               
Cow position:
               
chr1:55323630-55324250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
630
               

               
Alignm identity:
               
472
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 101
               

               
Conread position:
               
13-877
               

               
Cow position:
               
chr1:86548242-86549128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
903
               

               
Alignm identity:
               
582
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 137
               

               
Conread position:
               
14-324
               

               
Cow position:
               
chr1:84149303-84148994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
50, 91
               

               
Conread position:
               
14-336
               

               
Cow position:
               
chr1:63501349-63501027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
43, 149
               

               
Conread position:
               
15-265
               

               
Cow position:
               
chr1:28722682-28722430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 139
               

               
Conread position:
               
15-307
               

               
Cow position:
               
chr1:8330133-8330420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
39, 113
               

               
Conread position:
               
16-465
               

               
Cow position:
               
chr1:86609086-86608655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
245, 148
               

               
Conread position:
               
16-493
               

               
Cow position:
               
chr1:30058429-30057972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
159, 32
               

               
Conread position:
               
23-453
               

               
Cow position:
               
chr1:72120034-72119622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 131
               

               
Conread position:
               
23-889
               

               
Cow position:
               
chr1:82652519-82651627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
907
               

               
Alignm identity:
               
602
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 131
               

               
Conread position:
               
23-890
               

               
Cow position:
               
chr1:52172589-52173497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
913
               

               
Alignm identity:
               
635
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 131
               

               
Conread position:
               
31-911
               

               
Cow position:
               
chr1:88759441-88758528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
920
               

               
Alignm identity:
               
581
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 122
               

               
Conread position:
               
55-362
               

               
Cow position:
               
chr1:99995247-99995552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
55-524
               

               
Cow position:
               
chr1:29904218-29904675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
10, 68
               

               
Conread position:
               
56-326
               

               
Cow position:
               
chr1:32342199-32342464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
133, 85
               

               
Conread position:
               
61-469
               

               
Cow position:
               
chr1:37420134-37420527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
61-525
               

               
Cow position:
               
chr1:73071178-73071642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
337, 96
               

               
Conread position:
               
62-565
               

               
Cow position:
               
chr1:8027303-8027829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
227, 8
               

               
Conread position:
               
63-883
               

               
Cow position:
               
chr1:58224133-58223299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
854
               

               
Alignm identity:
               
550
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 87
               

               
Conread position:
               
68-911
               

               
Cow position:
               
chr1:13450024-13449150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
880
               

               
Alignm identity:
               
557
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 82
               

               
Conread position:
               
71-493
               

               
Cow position:
               
chr1:23050477-23050062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
89, 71
               

               
Conread position:
               
78-570
               

               
Cow position:
               
chr1:11863439-11863939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 219
               

               
Conread position:
               
87-634
               

               
Cow position:
               
chr1:3934351-3934871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
361, 45
               

               
Conread position:
               
91-634
               

               
Cow position:
               
chr1:94659691-94659147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 63
               

               
Conread position:
               
99-911
               

               
Cow position:
               
chr1:30283801-30284633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
845
               

               
Alignm identity:
               
521
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 51
               

               
Conread position:
               
100-911
               

               
Cow position:
               
chr1:97560518-97559676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
848
               

               
Alignm identity:
               
529
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 50
               

               
Conread position:
               
105-335
               

               
Cow position:
               
chr1:7144910-7145142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
67, 107
               

               
Conread position:
               
114-634
               

               
Cow position:
               
chr1:72080265-72079752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
334, 36
               

               
Conread position:
               
115-522
               

               
Cow position:
               
chr1:72135223-72134825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 35
               

               
Conread position:
               
139-524
               

               
Cow position:
               
chr1:82354208-82353828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
13, 43
               

               
Conread position:
               
141-891
               

               
Cow position:
               
chr1:37455475-37454729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
764
               

               
Alignm identity:
               
502
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 148
               

               
Conread position:
               
144-834
               

               
Cow position:
               
chr1:9382484-9383188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
721
               

               
Alignm identity:
               
464
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 109
               

               
Conread position:
               
147-527
               

               
Cow position:
               
chr1:61732817-61732446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
96, 17
               

               
Conread position:
               
150-457
               

               
Cow position:
               
chr1:79108862-79108574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
180-526
               

               
Cow position:
               
chr1:53046218-53046556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
290, 119
               

               
Conread position:
               
186-527
               

               
Cow position:
               
chr1:40907845-40907507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
301, 103
               

               
Conread position:
               
212-634
               

               
Cow position:
               
chr1:91893311-91893725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
236, 74
               

               
Conread position:
               
227-631
               

               
Cow position:
               
chr1:42290101-42289707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
11, 28
               

               
Conread position:
               
237-889
               

               
Cow position:
               
chr1:33895161-33894489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
679
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
33, 5
               

               
Conread position:
               
271-631
               

               
Cow position:
               
chr1:59672726-59672369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
5, 82
               

               
Conread position:
               
296-466
               

               
Cow position:
               
chr1:87208013-87208178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
296-702
               

               
Cow position:
               
chr1:53364318-53363905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 78
               

               
Conread position:
               
311-960
               

               
Cow position:
               
chr1:38388111-38388730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
662
               

               
Alignm identity:
               
456
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 35
               

               
Conread position:
               
313-633
               

               
Cow position:
               
chr1:45097207-45096880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 141
               

               
Conread position:
               
320-527
               

               
Cow position:
               
chr1:52323494-52323285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
147, 17
               

               
Conread position:
               
336-542
               

               
Cow position:
               
chr1:89478770-89478565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
96, 57
               

               
Conread position:
               
337-1146
               

               
Cow position:
               
chr1:77122004-77122805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
835
               

               
Alignm identity:
               
572
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 25
               

               
Conread position:
               
342-891
               

               
Cow position:
               
chr1:89771323-89771874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
560
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 157
               

               
Conread position:
               
351-911
               

               
Cow position:
               
chr1:68501555-68500982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
116, 454
               

               
Conread position:
               
351-911
               

               
Cow position:
               
chr1:69764562-69763994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
575
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
116, 144
               

               
Conread position:
               
358-634
               

               
Cow position:
               
chr1:89361520-89361240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
90, 231
               

               
Conread position:
               
359-631
               

               
Cow position:
               
chr1:28722378-28722102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 95
               

               
Conread position:
               
377-682
               

               
Cow position:
               
chr1:100976424-100976733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
90, 255
               

               
Conread position:
               
510-1126
               

               
Cow position:
               
chr1:40907020-40906411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
632
               

               
Alignm identity:
               
430
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 157
               

               
Conread position:
               
535-775
               

               
Cow position:
               
chr1:72118432-72118196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
26, 142
               

               
Conread position:
               
535-1140
               

               
Cow position:
               
chr1:72134271-72133641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
637
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 252
               

               
Conread position:
               
536-844
               

               
Cow position:
               
chr1:87460185-87460491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
25, 87
               

               
Conread position:
               
542-793
               

               
Cow position:
               
chr1:52323131-52322876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
21, 94
               

               
Conread position:
               
542-808
               

               
Cow position:
               
chr1:42057950-42057675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
542-1135
               

               
Cow position:
               
chr1:89478412-89477795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
624
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 13
               

               
Conread position:
               
558-837
               

               
Cow position:
               
chr1:44087397-44087671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
21, 77
               

               
Conread position:
               
623-1150
               

               
Cow position:
               
chr1:89740927-89741445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 28
               

               
Conread position:
               
662-871
               

               
Cow position:
               
chr1:67900743-67900954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
45, 72
               

               
Conread position:
               
705-1135
               

               
Cow position:
               
chr1:28722072-28721652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
56, 51
               

               
Conread position:
               
743-1146
               

               
Cow position:
               
chr1:72062791-72063187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 57
               

               
Conread position:
               
774-1146
               

               
Cow position:
               
chr1:93222715-93223081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
250, 128
               

               
Conread position:
               
792-1146
               

               
Cow position:
               
chr1:52322659-52322300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
26, 161
               

               
Conread position:
               
846-1146
               

               
Cow position:
               
chr1:79885378-79885684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
149, 58
               

               
Conread position:
               
867-1146
               

               
Cow position:
               
chr1:72118127-72117846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
142, 37
               

               
Conread position:
               
902-1074
               

               
Cow position:
               
chr1:45096682-45096502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
915-1149
               

               
Cow position:
               
chr1:52234248-52234487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
925-1150
               

               
Cow position:
               
chr1:72655796-72655563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
937-1134
               

               
Cow position:
               
chr1:88634435-88634234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
87, 67
               

               
Conread position:
               
970-1136
               

               
Cow position:
               
chr1:44087838-44088010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
41, 0
               
Show alignments to all cow chromosomes.