Cow genome map

Conread name: Ss1.1-Tra1-TCH01E040098.5

Conread position: 1-255
Cow position:
Alignm length: 263
Alignm identity: 193
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 63, 150

Conread position: 1-266
Cow position:
Alignm length: 266
Alignm identity: 191
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 120, 0

Conread position: 1-266
Cow position:
Alignm length: 267
Alignm identity: 188
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 143, 126

Conread position: 1-267
Cow position:
Alignm length: 271
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 150

Conread position: 1-268
Cow position:
Alignm length: 273
Alignm identity: 197
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 50, 142

Conread position: 1-287
Cow position:
Alignm length: 292
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 154

Conread position: 1-314
Cow position:
Alignm length: 319
Alignm identity: 214
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 52, 175

Conread position: 1-341
Cow position:
Alignm length: 345
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 90

Conread position: 1-369
Cow position:
Alignm length: 374
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 143

Conread position: 1-493
Cow position:
Alignm length: 495
Alignm identity: 328
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 9, 47

Conread position: 1-520
Cow position:
Alignm length: 541
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 296

Conread position: 1-565
Cow position:
Alignm length: 567
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 58

Conread position: 1-585
Cow position:
Alignm length: 591
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 51

Conread position: 1-602
Cow position:
Alignm length: 617
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 153

Conread position: 1-631
Cow position:
Alignm length: 638
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 465, 69

Conread position: 1-631
Cow position:
Alignm length: 642
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 85

Conread position: 1-633
Cow position:
Alignm length: 640
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 70

Conread position: 1-634
Cow position:
Alignm length: 650
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 219

Conread position: 1-650
Cow position:
Alignm length: 660
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 69

Conread position: 1-694
Cow position:
Alignm length: 712
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 29

Conread position: 1-705
Cow position:
Alignm length: 723
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 153

Conread position: 1-706
Cow position:
Alignm length: 722
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 47

Conread position: 1-742
Cow position:
Alignm length: 776
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 102

Conread position: 1-836
Cow position:
Alignm length: 872
Alignm identity: 572
Alignm E-value: 0
Alignm gaps (pig, cow): 333, 47

Conread position: 1-840
Cow position:
Alignm length: 859
Alignm identity: 624
Alignm E-value: 0
Alignm gaps (pig, cow): 436, 30

Conread position: 1-888
Cow position:
Alignm length: 935
Alignm identity: 607
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 160

Conread position: 1-889
Cow position:
Alignm length: 934
Alignm identity: 596
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 249

Conread position: 1-889
Cow position:
Alignm length: 929
Alignm identity: 589
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 153

Conread position: 1-889
Cow position:
Alignm length: 929
Alignm identity: 616
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 153

Conread position: 1-889
Cow position:
Alignm length: 925
Alignm identity: 587
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 150

Conread position: 1-911
Cow position:
Alignm length: 932
Alignm identity: 562
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 153

Conread position: 1-911
Cow position:
Alignm length: 951
Alignm identity: 614
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 153

Conread position: 1-911
Cow position:
Alignm length: 948
Alignm identity: 616
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 55

Conread position: 1-911
Cow position:
Alignm length: 944
Alignm identity: 627
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 153

Conread position: 2-285
Cow position:
Alignm length: 285
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 149

Conread position: 2-303
Cow position:
Alignm length: 305
Alignm identity: 214
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 39, 58

Conread position: 2-494
Cow position:
Alignm length: 501
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 155

Conread position: 2-501
Cow position:
Alignm length: 508
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 151

Conread position: 2-503
Cow position:
Alignm length: 510
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 152

Conread position: 2-503
Cow position:
Alignm length: 507
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 53

Conread position: 2-503
Cow position:
Alignm length: 510
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 152

Conread position: 2-519
Cow position:
Alignm length: 539
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 151

Conread position: 2-525
Cow position:
Alignm length: 534
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 152

Conread position: 2-525
Cow position:
Alignm length: 534
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 82

Conread position: 2-548
Cow position:
Alignm length: 555
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 152

Conread position: 2-566
Cow position:
Alignm length: 575
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 152

Conread position: 2-634
Cow position:
Alignm length: 645
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 149

Conread position: 2-634
Cow position:
Alignm length: 645
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 150

Conread position: 2-634
Cow position:
Alignm length: 651
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 152

Conread position: 2-637
Cow position:
Alignm length: 662
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 152

Conread position: 3-380
Cow position:
Alignm length: 383
Alignm identity: 251
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 53, 33

Conread position: 7-687
Cow position:
Alignm length: 708
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 17

Conread position: 7-826
Cow position:
Alignm length: 855
Alignm identity: 529
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 114

Conread position: 7-887
Cow position:
Alignm length: 910
Alignm identity: 586
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 144

Conread position: 7-889
Cow position:
Alignm length: 922
Alignm identity: 593
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 156

Conread position: 11-200
Cow position:
Alignm length: 194
Alignm identity: 158
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 41, 28

Conread position: 11-282
Cow position:
Alignm length: 277
Alignm identity: 201
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 42, 92

Conread position: 11-287
Cow position:
Alignm length: 277
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 11-349
Cow position:
Alignm length: 342
Alignm identity: 218
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 54, 75

Conread position: 11-489
Cow position:
Alignm length: 483
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 333, 59

Conread position: 11-520
Cow position:
Alignm length: 522
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 134

Conread position: 11-536
Cow position:
Alignm length: 538
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 73

Conread position: 11-632
Cow position:
Alignm length: 642
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 29

Conread position: 11-633
Cow position:
Alignm length: 640
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 22

Conread position: 11-634
Cow position:
Alignm length: 642
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 135

Conread position: 11-634
Cow position:
Alignm length: 650
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 333

Conread position: 11-889
Cow position:
Alignm length: 900
Alignm identity: 568
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 143

Conread position: 12-291
Cow position:
Alignm length: 282
Alignm identity: 184
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 58, 31

Conread position: 12-303
Cow position:
Alignm length: 298
Alignm identity: 205
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 30, 42

Conread position: 12-565
Cow position:
Alignm length: 573
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 145

Conread position: 12-634
Cow position:
Alignm length: 637
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 142

Conread position: 12-834
Cow position:
Alignm length: 867
Alignm identity: 565
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 142

Conread position: 13-265
Cow position:
Alignm length: 259
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 134

Conread position: 13-291
Cow position:
Alignm length: 285
Alignm identity: 187
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 47, 133

Conread position: 13-411
Cow position:
Alignm length: 401
Alignm identity: 270
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 288, 114

Conread position: 16-585
Cow position:
Alignm length: 578
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 35

Conread position: 22-521
Cow position:
Alignm length: 508
Alignm identity: 340
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 153, 20

Conread position: 24-614
Cow position:
Alignm length: 599
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 424, 126

Conread position: 25-288
Cow position:
Alignm length: 271
Alignm identity: 184
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 27, 118

Conread position: 39-282
Cow position:
Alignm length: 245
Alignm identity: 184
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 25, 16

Conread position: 42-524
Cow position:
Alignm length: 485
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 254, 26

Conread position: 54-696
Cow position:
Alignm length: 679
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 310

Conread position: 56-524
Cow position:
Alignm length: 474
Alignm identity: 309
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 246, 78

Conread position: 61-890
Cow position:
Alignm length: 865
Alignm identity: 548
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 75

Conread position: 63-533
Cow position:
Alignm length: 475
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 404, 49

Conread position: 65-1018
Cow position:
Alignm length: 969
Alignm identity: 732
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 10

Conread position: 96-435
Cow position:
Alignm length: 341
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 250, 46

Conread position: 105-527
Cow position:
Alignm length: 431
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 45

Conread position: 110-889
Cow position:
Alignm length: 803
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 40

Conread position: 127-826
Cow position:
Alignm length: 736
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 23

Conread position: 129-469
Cow position:
Alignm length: 355
Alignm identity: 243
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 174, 21

Conread position: 130-524
Cow position:
Alignm length: 403
Alignm identity: 253
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 17, 200

Conread position: 142-536
Cow position:
Alignm length: 400
Alignm identity: 265
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 33, 39

Conread position: 144-492
Cow position:
Alignm length: 353
Alignm identity: 231
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 315, 9

Conread position: 146-687
Cow position:
Alignm length: 553
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 311, 17

Conread position: 147-911
Cow position:
Alignm length: 800
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 490

Conread position: 160-614
Cow position:
Alignm length: 473
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 179

Conread position: 218-630
Cow position:
Alignm length: 423
Alignm identity: 284
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 20, 37

Conread position: 232-493
Cow position:
Alignm length: 267
Alignm identity: 169
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 234, 222

Conread position: 242-526
Cow position:
Alignm length: 293
Alignm identity: 219
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 25, 33

Conread position: 263-486
Cow position:
Alignm length: 231
Alignm identity: 176
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 23, 40

Conread position: 295-840
Cow position:
Alignm length: 560
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 7

Conread position: 311-626
Cow position:
Alignm length: 331
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 189

Conread position: 311-630
Cow position:
Alignm length: 330
Alignm identity: 231
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 155, 5

Conread position: 312-633
Cow position:
Alignm length: 329
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 142

Conread position: 317-633
Cow position:
Alignm length: 326
Alignm identity: 227
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 176, 5

Conread position: 331-889
Cow position:
Alignm length: 568
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 132

Conread position: 351-612
Cow position:
Alignm length: 273
Alignm identity: 180
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 116, 183

Conread position: 351-871
Cow position:
Alignm length: 537
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 86

Conread position: 353-669
Cow position:
Alignm length: 329
Alignm identity: 214
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 114, 0

Conread position: 358-634
Cow position:
Alignm length: 292
Alignm identity: 197
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 90, 239

Conread position: 358-911
Cow position:
Alignm length: 566
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 104

Conread position: 363-747
Cow position:
Alignm length: 400
Alignm identity: 255
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 104, 33

Conread position: 536-840
Cow position:
Alignm length: 313
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 282

Conread position: 536-1146
Cow position:
Alignm length: 629
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 121

Conread position: 623-1146
Cow position:
Alignm length: 532
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 43

Conread position: 717-1141
Cow position:
Alignm length: 437
Alignm identity: 276
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 11, 5

Conread position: 727-1146
Cow position:
Alignm length: 424
Alignm identity: 272
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 25, 179

Conread position: 787-1146
Cow position:
Alignm length: 365
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 115

Conread position: 843-1142
Cow position:
Alignm length: 312
Alignm identity: 220
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 102, 63

Conread position: 904-1140
Cow position:
Alignm length: 245
Alignm identity: 177
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 108, 42

Conread position: 927-1141
Cow position:
Alignm length: 222
Alignm identity: 151
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 82, 0

Conread position: 932-1149
Cow position:
Alignm length: 227
Alignm identity: 155
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 81, 44

Show alignments to all cow chromosomes.