Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01E040098.5 |
| Conread position: | 1-172 |
| Cow position: | chr12:45261467-45261286 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 64, 152 |
| Conread position: | 1-264 |
| Cow position: | chr12:14662759-14663022 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 50, 39 |
| Conread position: | 1-265 |
| Cow position: | chr12:48404898-48404637 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 0 |
| Conread position: | 1-269 |
| Cow position: | chr12:22026604-22026341 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 15, 32 |
| Conread position: | 1-270 |
| Cow position: | chr12:2651-2380 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 153 |
| Conread position: | 1-270 |
| Cow position: | chr12:8311038-8310766 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 145 |
| Conread position: | 1-287 |
| Cow position: | chr12:21941628-21941344 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 55 |
| Conread position: | 1-497 |
| Cow position: | chr12:1868318-1867834 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 333 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 144, 124 |
| Conread position: | 1-597 |
| Cow position: | chr12:21197679-21197083 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 465, 61 |
| Conread position: | 1-633 |
| Cow position: | chr12:21901799-21901214 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 131 |
| Conread position: | 1-633 |
| Cow position: | chr12:22332474-22331849 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 85 |
| Conread position: | 1-650 |
| Cow position: | chr12:21207547-21206871 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 150 |
| Conread position: | 1-669 |
| Cow position: | chr12:26141666-26140963 (view UCSC Genome Browser custom track) |
| Alignm length: | 708 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 99 |
| Conread position: | 1-889 |
| Cow position: | chr12:21254803-21255700 (view UCSC Genome Browser custom track) |
| Alignm length: | 915 |
| Alignm identity: | 578 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 153 |
| Conread position: | 1-889 |
| Cow position: | chr12:37558407-37557493 (view UCSC Genome Browser custom track) |
| Alignm length: | 921 |
| Alignm identity: | 584 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 42 |
| Conread position: | 1-889 |
| Cow position: | chr12:43031530-43032441 (view UCSC Genome Browser custom track) |
| Alignm length: | 925 |
| Alignm identity: | 593 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 146 |
| Conread position: | 1-911 |
| Cow position: | chr12:21426546-21425613 (view UCSC Genome Browser custom track) |
| Alignm length: | 946 |
| Alignm identity: | 597 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 150 |
| Conread position: | 2-237 |
| Cow position: | chr12:28766165-28766401 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 58, 131 |
| Conread position: | 2-472 |
| Cow position: | chr12:25101210-25101672 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 191 |
| Conread position: | 2-518 |
| Cow position: | chr12:11098093-11097585 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 152 |
| Conread position: | 2-616 |
| Cow position: | chr12:27933094-27933704 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 152 |
| Conread position: | 2-634 |
| Cow position: | chr12:6406794-6407421 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 144 |
| Conread position: | 2-634 |
| Cow position: | chr12:42859963-42860590 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 152 |
| Conread position: | 4-585 |
| Cow position: | chr12:2282396-2281809 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 138 |
| Conread position: | 7-370 |
| Cow position: | chr12:3360751-3360395 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 255 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 16, 79 |
| Conread position: | 11-271 |
| Cow position: | chr12:13949652-13949900 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 11-386 |
| Cow position: | chr12:15951417-15951780 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 369, 139 |
| Conread position: | 11-634 |
| Cow position: | chr12:8678279-8678882 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 141 |
| Conread position: | 11-634 |
| Cow position: | chr12:22205904-22206513 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 141 |
| Conread position: | 11-675 |
| Cow position: | chr12:20998277-20998949 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 135 |
| Conread position: | 11-891 |
| Cow position: | chr12:32653387-32652468 (view UCSC Genome Browser custom track) |
| Alignm length: | 923 |
| Alignm identity: | 594 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 140 |
| Conread position: | 13-346 |
| Cow position: | chr12:3631019-3630698 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 227 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 10, 117 |
| Conread position: | 13-539 |
| Cow position: | chr12:2839753-2840264 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 378, 130 |
| Conread position: | 13-633 |
| Cow position: | chr12:1402331-1401714 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 138 |
| Conread position: | 24-535 |
| Cow position: | chr12:21499946-21499447 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 351 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 37, 12 |
| Conread position: | 52-503 |
| Cow position: | chr12:252259-252700 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 88 |
| Conread position: | 55-223 |
| Cow position: | chr12:42420615-42420781 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 55-627 |
| Cow position: | chr12:26947459-26948016 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 47 |
| Conread position: | 101-671 |
| Cow position: | chr12:21883775-21883171 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 391 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 155, 59 |
| Conread position: | 213-454 |
| Cow position: | chr12:9708820-9709065 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 45, 104 |
| Conread position: | 218-669 |
| Cow position: | chr12:7425285-7424801 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 312 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 226-809 |
| Cow position: | chr12:22121352-22120769 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 45 |
| Conread position: | 239-503 |
| Cow position: | chr12:28766487-28766742 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 205, 83 |
| Conread position: | 253-539 |
| Cow position: | chr12:48404372-48404094 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 200, 40 |
| Conread position: | 253-654 |
| Cow position: | chr12:14663123-14663545 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 269 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 58, 107 |
| Conread position: | 254-810 |
| Cow position: | chr12:21058370-21058923 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 184 |
| Conread position: | 273-634 |
| Cow position: | chr12:45261239-45260878 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 16 |
| Conread position: | 279-643 |
| Cow position: | chr12:32183124-32182759 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 181 |
| Conread position: | 311-503 |
| Cow position: | chr12:21941058-21940869 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 357-633 |
| Cow position: | chr12:26795689-26795410 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 202 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 56, 173 |
| Conread position: | 358-629 |
| Cow position: | chr12:8310555-8310276 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 108, 96 |
| Conread position: | 374-671 |
| Cow position: | chr12:15954196-15954496 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 216 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 93, 13 |
| Conread position: | 686-1145 |
| Cow position: | chr12:15956279-15956727 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 329, 61 |
| Conread position: | 696-1146 |
| Cow position: | chr12:21897272-21896818 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 97 |
| Conread position: | 705-1135 |
| Cow position: | chr12:8310244-8309827 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 285 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 170, 9 |
| Conread position: | 796-1136 |
| Cow position: | chr12:21058930-21059266 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 40 |
| Conread position: | 824-1146 |
| Cow position: | chr12:22120775-22120461 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 78 |
Show alignments to all cow chromosomes.