Cow genome map

Conread name: Ss1.1-Tra1-TCH01E040098.5

Conread position: 1-151
Cow position: chr13:47860080-47859931 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 111
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 88, 0

Conread position: 1-258
Cow position: chr13:3058361-3058620 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 193
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 63, 153

Conread position: 1-286
Cow position: chr13:34692794-34692515 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 115

Conread position: 1-287
Cow position: chr13:34911737-34912020 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 209
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 52, 22

Conread position: 1-291
Cow position: chr13:2232291-2232013 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 210
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 51, 130

Conread position: 1-291
Cow position: chr13:62327950-62328239 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 146

Conread position: 1-303
Cow position: chr13:34936774-34936469 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 152

Conread position: 1-308
Cow position: chr13:30237807-30237501 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 232
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 63, 151

Conread position: 1-370
Cow position: chr13:32986418-32986781 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 160

Conread position: 1-461
Cow position: chr13:54284214-54283773 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 51

Conread position: 1-469
Cow position: chr13:31832233-31831795 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 0

Conread position: 1-565
Cow position: chr13:34187056-34187607 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 153

Conread position: 1-597
Cow position: chr13:34326046-34326647 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 30

Conread position: 1-631
Cow position: chr13:2908817-2909412 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 465, 27

Conread position: 1-631
Cow position: chr13:3276789-3276185 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 142

Conread position: 1-631
Cow position: chr13:13046191-13046790 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 150

Conread position: 1-700
Cow position: chr13:20542734-20543415 (view UCSC Genome Browser custom track)
Alignm length: 715
Alignm identity: 549
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 15

Conread position: 1-834
Cow position: chr13:4872708-4871843 (view UCSC Genome Browser custom track)
Alignm length: 877
Alignm identity: 562
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 55

Conread position: 1-888
Cow position: chr13:2389173-2390085 (view UCSC Genome Browser custom track)
Alignm length: 924
Alignm identity: 582
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 49

Conread position: 1-889
Cow position: chr13:17308106-17307199 (view UCSC Genome Browser custom track)
Alignm length: 924
Alignm identity: 584
Alignm E-value: 0
Alignm gaps (pig, cow): 290, 61

Conread position: 1-889
Cow position: chr13:21840563-21841487 (view UCSC Genome Browser custom track)
Alignm length: 927
Alignm identity: 603
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 174

Conread position: 1-889
Cow position: chr13:31734449-31735362 (view UCSC Genome Browser custom track)
Alignm length: 927
Alignm identity: 600
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 153

Conread position: 2-286
Cow position: chr13:33927932-33928202 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 214
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 40, 54

Conread position: 2-432
Cow position: chr13:4482107-4481694 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 152

Conread position: 2-525
Cow position: chr13:15520883-15521409 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 152

Conread position: 2-534
Cow position: chr13:46732725-46733223 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 347
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 456, 31

Conread position: 2-542
Cow position: chr13:48356953-48356429 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 34

Conread position: 2-551
Cow position: chr13:33336692-33337233 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 141

Conread position: 2-632
Cow position: chr13:4940717-4940103 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 152

Conread position: 2-633
Cow position: chr13:9044140-9043528 (view UCSC Genome Browser custom track)
Alignm length: 653
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 21

Conread position: 2-633
Cow position: chr13:34143028-34143629 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 150

Conread position: 2-634
Cow position: chr13:15924752-15925384 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 152

Conread position: 2-634
Cow position: chr13:30302697-30302071 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 94

Conread position: 2-634
Cow position: chr13:35756871-35756235 (view UCSC Genome Browser custom track)
Alignm length: 656
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 295

Conread position: 2-889
Cow position: chr13:30245103-30246017 (view UCSC Genome Browser custom track)
Alignm length: 918
Alignm identity: 594
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 152

Conread position: 5-527
Cow position: chr13:15080562-15081057 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 337
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 57, 8

Conread position: 10-891
Cow position: chr13:34868391-34867502 (view UCSC Genome Browser custom track)
Alignm length: 913
Alignm identity: 623
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 143

Conread position: 11-316
Cow position: chr13:31560811-31560508 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 202
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 46, 84

Conread position: 11-452
Cow position: chr13:30140615-30140178 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 289
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 31, 144

Conread position: 11-503
Cow position: chr13:6668502-6669006 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 143

Conread position: 11-614
Cow position: chr13:34042743-34043343 (view UCSC Genome Browser custom track)
Alignm length: 620
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 143

Conread position: 11-631
Cow position: chr13:30657343-30657938 (view UCSC Genome Browser custom track)
Alignm length: 627
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 455, 139

Conread position: 11-720
Cow position: chr13:2297177-2297911 (view UCSC Genome Browser custom track)
Alignm length: 742
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 111

Conread position: 12-475
Cow position: chr13:3654690-3655143 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 138

Conread position: 12-529
Cow position: chr13:32738200-32738696 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 50

Conread position: 12-634
Cow position: chr13:31612715-31613342 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 142

Conread position: 13-145
Cow position: chr13:32606554-32606690 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 106
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 37, 0

Conread position: 13-606
Cow position: chr13:1593534-1594130 (view UCSC Genome Browser custom track)
Alignm length: 614
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 142

Conread position: 13-893
Cow position: chr13:50109083-50108196 (view UCSC Genome Browser custom track)
Alignm length: 897
Alignm identity: 560
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 138

Conread position: 17-633
Cow position: chr13:33825116-33825729 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 39

Conread position: 23-892
Cow position: chr13:35030121-35029236 (view UCSC Genome Browser custom track)
Alignm length: 901
Alignm identity: 595
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 48

Conread position: 24-525
Cow position: chr13:32544556-32544066 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 130

Conread position: 25-613
Cow position: chr13:15543073-15542487 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 129

Conread position: 52-545
Cow position: chr13:34767663-34768109 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 325
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 78, 0

Conread position: 68-742
Cow position: chr13:53834333-53833628 (view UCSC Genome Browser custom track)
Alignm length: 713
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 28

Conread position: 98-717
Cow position: chr13:61951722-61951106 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 41

Conread position: 117-911
Cow position: chr13:676477-675653 (view UCSC Genome Browser custom track)
Alignm length: 828
Alignm identity: 515
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 33

Conread position: 130-911
Cow position: chr13:49973216-49972401 (view UCSC Genome Browser custom track)
Alignm length: 820
Alignm identity: 516
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 20

Conread position: 158-313
Cow position: chr13:47859797-47859642 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 116
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 103, 95

Conread position: 170-496
Cow position: chr13:13324264-13323920 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 238
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 121, 281

Conread position: 184-672
Cow position: chr13:51764075-51763554 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 340
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 96, 189

Conread position: 213-520
Cow position: chr13:2232111-2231813 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 216
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 37, 5

Conread position: 220-493
Cow position: chr13:19438110-19437839 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 183
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 71, 101

Conread position: 253-889
Cow position: chr13:3058878-3059517 (view UCSC Genome Browser custom track)
Alignm length: 653
Alignm identity: 398
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 68, 99

Conread position: 266-633
Cow position: chr13:62328193-62328564 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 188

Conread position: 273-628
Cow position: chr13:33928167-33928507 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 258
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 186, 20

Conread position: 282-503
Cow position: chr13:58716355-58716141 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 155
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 15, 118

Conread position: 293-633
Cow position: chr13:34692534-34692189 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 58

Conread position: 306-1140
Cow position: chr13:34936195-34935334 (view UCSC Genome Browser custom track)
Alignm length: 865
Alignm identity: 592
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 33

Conread position: 338-503
Cow position: chr13:44184745-44184912 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 119
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 61, 0

Conread position: 386-631
Cow position: chr13:41594150-41593895 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 175
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 81, 0

Conread position: 507-1053
Cow position: chr13:54283771-54283234 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 19

Conread position: 728-1146
Cow position: chr13:20580096-20580511 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 85

Conread position: 744-894
Cow position: chr13:44184916-44185068 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 11, 56

Conread position: 780-1138
Cow position: chr13:11828124-11828462 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 248
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 228, 28

Conread position: 870-1146
Cow position: chr13:20543536-20543809 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 192
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 144, 34

Conread position: 895-1149
Cow position: chr13:45931555-45931301 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 172
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 111, 9

Conread position: 904-1141
Cow position: chr13:30658123-30658364 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 168
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 102, 156

Conread position: 943-1152
Cow position: chr13:34769128-34769343 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 150
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 68, 0

Conread position: 970-1149
Cow position: chr13:47577713-47577900 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 131
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 34, 0

Show alignments to all cow chromosomes.