Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01E040098.5 |
| Conread position: | 1-151 |
| Cow position: | |
| Alignm length: | 151 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 1-258 |
| Cow position: | |
| Alignm length: | 262 |
| Alignm identity: | 193 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 63, 153 |
| Conread position: | 1-286 |
| Cow position: | |
| Alignm length: | 291 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 115 |
| Conread position: | 1-287 |
| Cow position: | |
| Alignm length: | 290 |
| Alignm identity: | 209 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 52, 22 |
| Conread position: | 1-291 |
| Cow position: | |
| Alignm length: | 295 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 51, 130 |
| Conread position: | 1-291 |
| Cow position: | |
| Alignm length: | 295 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 146 |
| Conread position: | 1-303 |
| Cow position: | |
| Alignm length: | 314 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 152 |
| Conread position: | 1-308 |
| Cow position: | |
| Alignm length: | 319 |
| Alignm identity: | 232 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 63, 151 |
| Conread position: | 1-370 |
| Cow position: | |
| Alignm length: | 372 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 160 |
| Conread position: | 1-461 |
| Cow position: | |
| Alignm length: | 462 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 51 |
| Conread position: | 1-469 |
| Cow position: | |
| Alignm length: | 469 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 1-565 |
| Cow position: | |
| Alignm length: | 574 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 153 |
| Conread position: | 1-597 |
| Cow position: | |
| Alignm length: | 612 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 30 |
| Conread position: | 1-631 |
| Cow position: | |
| Alignm length: | 638 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 465, 27 |
| Conread position: | 1-631 |
| Cow position: | |
| Alignm length: | 644 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 142 |
| Conread position: | 1-631 |
| Cow position: | |
| Alignm length: | 635 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 150 |
| Conread position: | 1-700 |
| Cow position: | |
| Alignm length: | 715 |
| Alignm identity: | 549 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 15 |
| Conread position: | 1-834 |
| Cow position: | |
| Alignm length: | 877 |
| Alignm identity: | 562 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 55 |
| Conread position: | 1-888 |
| Cow position: | |
| Alignm length: | 924 |
| Alignm identity: | 582 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 49 |
| Conread position: | 1-889 |
| Cow position: | |
| Alignm length: | 924 |
| Alignm identity: | 584 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 290, 61 |
| Conread position: | 1-889 |
| Cow position: | |
| Alignm length: | 927 |
| Alignm identity: | 603 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 174 |
| Conread position: | 1-889 |
| Cow position: | |
| Alignm length: | 927 |
| Alignm identity: | 600 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 153 |
| Conread position: | 2-286 |
| Cow position: | |
| Alignm length: | 287 |
| Alignm identity: | 214 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 40, 54 |
| Conread position: | 2-432 |
| Cow position: | |
| Alignm length: | 435 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 152 |
| Conread position: | 2-525 |
| Cow position: | |
| Alignm length: | 533 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 152 |
| Conread position: | 2-534 |
| Cow position: | |
| Alignm length: | 536 |
| Alignm identity: | 347 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 456, 31 |
| Conread position: | 2-542 |
| Cow position: | |
| Alignm length: | 546 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 34 |
| Conread position: | 2-551 |
| Cow position: | |
| Alignm length: | 562 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 141 |
| Conread position: | 2-632 |
| Cow position: | |
| Alignm length: | 642 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 152 |
| Conread position: | 2-633 |
| Cow position: | |
| Alignm length: | 653 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 21 |
| Conread position: | 2-633 |
| Cow position: | |
| Alignm length: | 645 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 150 |
| Conread position: | 2-634 |
| Cow position: | |
| Alignm length: | 649 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 152 |
| Conread position: | 2-634 |
| Cow position: | |
| Alignm length: | 648 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 94 |
| Conread position: | 2-634 |
| Cow position: | |
| Alignm length: | 656 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 295 |
| Conread position: | 2-889 |
| Cow position: | |
| Alignm length: | 918 |
| Alignm identity: | 594 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 152 |
| Conread position: | 5-527 |
| Cow position: | |
| Alignm length: | 530 |
| Alignm identity: | 337 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 57, 8 |
| Conread position: | 10-891 |
| Cow position: | |
| Alignm length: | 913 |
| Alignm identity: | 623 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 143 |
| Conread position: | 11-316 |
| Cow position: | |
| Alignm length: | 308 |
| Alignm identity: | 202 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 46, 84 |
| Conread position: | 11-452 |
| Cow position: | |
| Alignm length: | 448 |
| Alignm identity: | 289 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 31, 144 |
| Conread position: | 11-503 |
| Cow position: | |
| Alignm length: | 507 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 143 |
| Conread position: | 11-614 |
| Cow position: | |
| Alignm length: | 620 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 143 |
| Conread position: | 11-631 |
| Cow position: | |
| Alignm length: | 627 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 455, 139 |
| Conread position: | 11-720 |
| Cow position: | |
| Alignm length: | 742 |
| Alignm identity: | 492 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 111 |
| Conread position: | 12-475 |
| Cow position: | |
| Alignm length: | 472 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 138 |
| Conread position: | 12-529 |
| Cow position: | |
| Alignm length: | 525 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 50 |
| Conread position: | 12-634 |
| Cow position: | |
| Alignm length: | 646 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 142 |
| Conread position: | 13-145 |
| Cow position: | |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 13-606 |
| Cow position: | |
| Alignm length: | 614 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 142 |
| Conread position: | 13-893 |
| Cow position: | |
| Alignm length: | 897 |
| Alignm identity: | 560 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 138 |
| Conread position: | 17-633 |
| Cow position: | |
| Alignm length: | 639 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 39 |
| Conread position: | 23-892 |
| Cow position: | |
| Alignm length: | 901 |
| Alignm identity: | 595 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 48 |
| Conread position: | 24-525 |
| Cow position: | |
| Alignm length: | 512 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 130 |
| Conread position: | 25-613 |
| Cow position: | |
| Alignm length: | 604 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 129 |
| Conread position: | 52-545 |
| Cow position: | |
| Alignm length: | 494 |
| Alignm identity: | 325 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 68-742 |
| Cow position: | |
| Alignm length: | 713 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 28 |
| Conread position: | 98-717 |
| Cow position: | |
| Alignm length: | 637 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 41 |
| Conread position: | 117-911 |
| Cow position: | |
| Alignm length: | 828 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 33 |
| Conread position: | 130-911 |
| Cow position: | |
| Alignm length: | 820 |
| Alignm identity: | 516 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 20 |
| Conread position: | 158-313 |
| Cow position: | |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 103, 95 |
| Conread position: | 170-496 |
| Cow position: | |
| Alignm length: | 347 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 121, 281 |
| Conread position: | 184-672 |
| Cow position: | |
| Alignm length: | 525 |
| Alignm identity: | 340 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 96, 189 |
| Conread position: | 213-520 |
| Cow position: | |
| Alignm length: | 314 |
| Alignm identity: | 216 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 37, 5 |
| Conread position: | 220-493 |
| Cow position: | |
| Alignm length: | 276 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 71, 101 |
| Conread position: | 253-889 |
| Cow position: | |
| Alignm length: | 653 |
| Alignm identity: | 398 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 68, 99 |
| Conread position: | 266-633 |
| Cow position: | |
| Alignm length: | 375 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 188 |
| Conread position: | 273-628 |
| Cow position: | |
| Alignm length: | 363 |
| Alignm identity: | 258 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 186, 20 |
| Conread position: | 282-503 |
| Cow position: | |
| Alignm length: | 223 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 15, 118 |
| Conread position: | 293-633 |
| Cow position: | |
| Alignm length: | 351 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 58 |
| Conread position: | 306-1140 |
| Cow position: | |
| Alignm length: | 865 |
| Alignm identity: | 592 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 33 |
| Conread position: | 338-503 |
| Cow position: | |
| Alignm length: | 168 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 386-631 |
| Cow position: | |
| Alignm length: | 256 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 507-1053 |
| Cow position: | |
| Alignm length: | 558 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 19 |
| Conread position: | 728-1146 |
| Cow position: | |
| Alignm length: | 431 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 85 |
| Conread position: | 744-894 |
| Cow position: | |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 11, 56 |
| Conread position: | 780-1138 |
| Cow position: | |
| Alignm length: | 365 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 228, 28 |
| Conread position: | 870-1146 |
| Cow position: | |
| Alignm length: | 279 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 144, 34 |
| Conread position: | 895-1149 |
| Cow position: | |
| Alignm length: | 259 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 111, 9 |
| Conread position: | 904-1141 |
| Cow position: | |
| Alignm length: | 247 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 102, 156 |
| Conread position: | 943-1152 |
| Cow position: | |
| Alignm length: | 216 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 970-1149 |
| Cow position: | |
| Alignm length: | 188 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 34, 0 |
Show alignments to all cow chromosomes.