Cow genome map

Conread name: Ss1.1-Tra1-TCH01E040098.5

Conread position: 1-232
Cow position: chr14:42151832-42151594 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 142
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 51, 0

Conread position: 1-252
Cow position: chr14:7831030-7831279 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 193
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 51, 147

Conread position: 1-270
Cow position: chr14:45850733-45850465 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 150

Conread position: 1-285
Cow position: chr14:29048392-29048672 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 56

Conread position: 1-287
Cow position: chr14:23256867-23256577 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 207
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 69, 0

Conread position: 1-314
Cow position: chr14:33394268-33394592 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 217
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 63, 225

Conread position: 1-370
Cow position: chr14:750077-749714 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 146

Conread position: 1-370
Cow position: chr14:9045073-9044704 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 229
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 49, 153

Conread position: 1-430
Cow position: chr14:38532787-38533217 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 114

Conread position: 1-493
Cow position: chr14:48704106-48703631 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 318
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 56, 20

Conread position: 1-503
Cow position: chr14:44855917-44856398 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 153

Conread position: 1-570
Cow position: chr14:45672537-45673133 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 153

Conread position: 1-623
Cow position: chr14:35387622-35388244 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 197

Conread position: 1-631
Cow position: chr14:45712467-45713070 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 163

Conread position: 1-633
Cow position: chr14:13660479-13661089 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 460
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 239

Conread position: 1-633
Cow position: chr14:44225917-44225283 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 460
Alignm E-value: 0
Alignm gaps (pig, cow): 408, 74

Conread position: 1-700
Cow position: chr14:30585431-30586162 (view UCSC Genome Browser custom track)
Alignm length: 737
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 33

Conread position: 1-891
Cow position: chr14:13272766-13271887 (view UCSC Genome Browser custom track)
Alignm length: 912
Alignm identity: 592
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 97

Conread position: 1-891
Cow position: chr14:30596874-30597801 (view UCSC Genome Browser custom track)
Alignm length: 945
Alignm identity: 616
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 5

Conread position: 2-253
Cow position: chr14:16920178-16920428 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 182
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 38, 24

Conread position: 2-518
Cow position: chr14:35928684-35928180 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 125

Conread position: 2-534
Cow position: chr14:47589382-47588864 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 345
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 50, 131

Conread position: 2-535
Cow position: chr14:20781963-20781438 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 152

Conread position: 2-603
Cow position: chr14:17001548-17002144 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 142

Conread position: 2-614
Cow position: chr14:37223409-37222796 (view UCSC Genome Browser custom track)
Alignm length: 630
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 152

Conread position: 2-631
Cow position: chr14:47624076-47623464 (view UCSC Genome Browser custom track)
Alignm length: 659
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 152

Conread position: 2-633
Cow position: chr14:23690717-23691338 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 273

Conread position: 2-634
Cow position: chr14:5528568-5527941 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 446, 60

Conread position: 2-634
Cow position: chr14:13302537-13301905 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 151

Conread position: 2-634
Cow position: chr14:17684902-17684279 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 108

Conread position: 2-634
Cow position: chr14:19328762-19329394 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 149

Conread position: 2-634
Cow position: chr14:50110088-50109466 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 153

Conread position: 3-346
Cow position: chr14:47921512-47921187 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 227
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 57, 165

Conread position: 3-539
Cow position: chr14:44376943-44376403 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 25

Conread position: 5-211
Cow position: chr14:44422062-44421854 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 166
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 9, 80

Conread position: 5-1143
Cow position: chr14:46084130-46082999 (view UCSC Genome Browser custom track)
Alignm length: 1159
Alignm identity: 861
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 59

Conread position: 6-264
Cow position: chr14:44616792-44616535 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 179
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 10, 50

Conread position: 6-613
Cow position: chr14:22032179-22032784 (view UCSC Genome Browser custom track)
Alignm length: 626
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 141

Conread position: 7-282
Cow position: chr14:34775096-34774827 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 190
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 34, 28

Conread position: 7-291
Cow position: chr14:43552924-43552637 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 203
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 46, 173

Conread position: 7-309
Cow position: chr14:23529508-23529794 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 199
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 64, 0

Conread position: 7-585
Cow position: chr14:45767508-45766957 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 172

Conread position: 8-314
Cow position: chr14:40170180-40170486 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 214
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 119, 38

Conread position: 8-323
Cow position: chr14:33235500-33235187 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 209
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 57, 63

Conread position: 10-503
Cow position: chr14:45833660-45833176 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 268

Conread position: 11-347
Cow position: chr14:31607422-31607761 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 172

Conread position: 11-441
Cow position: chr14:22018902-22018461 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 11-493
Cow position: chr14:41407346-41406864 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 331
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 54, 86

Conread position: 11-603
Cow position: chr14:16273798-16274393 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 160

Conread position: 11-634
Cow position: chr14:7471873-7471250 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 5

Conread position: 11-634
Cow position: chr14:11154655-11155278 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 143

Conread position: 11-634
Cow position: chr14:28994357-28994984 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 143

Conread position: 11-646
Cow position: chr14:44685546-44684895 (view UCSC Genome Browser custom track)
Alignm length: 659
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 143

Conread position: 11-667
Cow position: chr14:45160362-45159687 (view UCSC Genome Browser custom track)
Alignm length: 680
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 142

Conread position: 11-717
Cow position: chr14:41755360-41754666 (view UCSC Genome Browser custom track)
Alignm length: 726
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 52

Conread position: 11-880
Cow position: chr14:45205568-45204712 (view UCSC Genome Browser custom track)
Alignm length: 892
Alignm identity: 575
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 139

Conread position: 11-884
Cow position: chr14:45916896-45916008 (view UCSC Genome Browser custom track)
Alignm length: 913
Alignm identity: 599
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 23

Conread position: 11-907
Cow position: chr14:40339205-40338296 (view UCSC Genome Browser custom track)
Alignm length: 922
Alignm identity: 684
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 140

Conread position: 11-911
Cow position: chr14:17491959-17492887 (view UCSC Genome Browser custom track)
Alignm length: 941
Alignm identity: 614
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 143

Conread position: 12-630
Cow position: chr14:44130417-44129839 (view UCSC Genome Browser custom track)
Alignm length: 623
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 450, 55

Conread position: 13-417
Cow position: chr14:36967752-36967373 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 14

Conread position: 13-503
Cow position: chr14:48254815-48255300 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 72

Conread position: 13-536
Cow position: chr14:11468095-11467589 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 134

Conread position: 16-254
Cow position: chr14:13778357-13778117 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 175
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 37, 131

Conread position: 16-307
Cow position: chr14:45080027-45079737 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 207
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 37, 138

Conread position: 25-633
Cow position: chr14:41085328-41085900 (view UCSC Genome Browser custom track)
Alignm length: 620
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 69

Conread position: 28-462
Cow position: chr14:48150465-48150884 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 274
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 149, 20

Conread position: 39-256
Cow position: chr14:13326644-13326858 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 153
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 31, 0

Conread position: 51-307
Cow position: chr14:44261634-44261890 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 187
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 17, 96

Conread position: 52-631
Cow position: chr14:44551509-44550930 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 99

Conread position: 54-303
Cow position: chr14:14422559-14422803 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 183
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 154, 26

Conread position: 54-712
Cow position: chr14:46464240-46463594 (view UCSC Genome Browser custom track)
Alignm length: 674
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 8

Conread position: 56-347
Cow position: chr14:14309615-14309897 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 205
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 200, 85

Conread position: 57-526
Cow position: chr14:44580388-44579941 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 317
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 410, 8

Conread position: 61-261
Cow position: chr14:15277407-15277611 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 155
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 85, 0

Conread position: 65-340
Cow position: chr14:31886911-31886651 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 183
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 273, 6

Conread position: 68-291
Cow position: chr14:1500191-1499970 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 169
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 24, 83

Conread position: 68-890
Cow position: chr14:50134347-50133537 (view UCSC Genome Browser custom track)
Alignm length: 831
Alignm identity: 579
Alignm E-value: 0
Alignm gaps (pig, cow): 407, 35

Conread position: 69-889
Cow position: chr14:2283424-2282585 (view UCSC Genome Browser custom track)
Alignm length: 849
Alignm identity: 550
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 81

Conread position: 85-533
Cow position: chr14:38146059-38145613 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 285
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 304, 57

Conread position: 87-889
Cow position: chr14:17241653-17240828 (view UCSC Genome Browser custom track)
Alignm length: 837
Alignm identity: 523
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 55

Conread position: 104-270
Cow position: chr14:42404347-42404185 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 123
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 155, 38

Conread position: 117-265
Cow position: chr14:45304121-45304265 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 112
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 93, 0

Conread position: 130-911
Cow position: chr14:33394428-33395241 (view UCSC Genome Browser custom track)
Alignm length: 820
Alignm identity: 515
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 20

Conread position: 131-749
Cow position: chr14:10562006-10561358 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 19

Conread position: 220-633
Cow position: chr14:45850578-45850165 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 275
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 71, 59

Conread position: 234-911
Cow position: chr14:9044731-9044045 (view UCSC Genome Browser custom track)
Alignm length: 696
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 20

Conread position: 253-1151
Cow position: chr14:45304373-45305271 (view UCSC Genome Browser custom track)
Alignm length: 916
Alignm identity: 656
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 36

Conread position: 260-889
Cow position: chr14:16418311-16418953 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 183

Conread position: 275-634
Cow position: chr14:755091-754735 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 242
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 173, 56

Conread position: 299-633
Cow position: chr14:7831294-7831627 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 233
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 166, 17

Conread position: 303-829
Cow position: chr14:45030175-45030713 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 347
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 35, 108

Conread position: 306-633
Cow position: chr14:42404109-42403775 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 230
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 160, 138

Conread position: 351-763
Cow position: chr14:9678369-9678795 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 274
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 116, 362

Conread position: 351-911
Cow position: chr14:29049241-29049801 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 358
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 116, 280

Conread position: 386-883
Cow position: chr14:46434329-46433829 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 202

Conread position: 422-633
Cow position: chr14:36966882-36966667 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 151
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 45, 79

Conread position: 606-858
Cow position: chr14:41771858-41771609 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 0

Conread position: 611-922
Cow position: chr14:45159717-45159409 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 58

Conread position: 616-846
Cow position: chr14:35388515-35388747 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 0

Conread position: 702-890
Cow position: chr14:46463412-46463223 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 128
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 56, 0

Conread position: 717-1149
Cow position: chr14:1498831-1498411 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 286
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 287, 38

Conread position: 889-1149
Cow position: chr14:42403580-42403315 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 181
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 120, 15

Conread position: 902-1145
Cow position: chr14:41771594-41771359 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 174
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 19, 0

Conread position: 912-1146
Cow position: chr14:40338316-40338076 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 172
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 100, 0

Conread position: 947-1146
Cow position: chr14:45766688-45766481 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 143
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 57, 0

Show alignments to all cow chromosomes.