Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01E040098.5 |
| Conread position: | 1-232 |
| Cow position: | |
| Alignm length: | 239 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1-252 |
| Cow position: | |
| Alignm length: | 257 |
| Alignm identity: | 193 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 51, 147 |
| Conread position: | 1-270 |
| Cow position: | |
| Alignm length: | 271 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 150 |
| Conread position: | 1-285 |
| Cow position: | |
| Alignm length: | 288 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 56 |
| Conread position: | 1-287 |
| Cow position: | |
| Alignm length: | 291 |
| Alignm identity: | 207 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 1-314 |
| Cow position: | |
| Alignm length: | 327 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 63, 225 |
| Conread position: | 1-370 |
| Cow position: | |
| Alignm length: | 374 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 146 |
| Conread position: | 1-370 |
| Cow position: | |
| Alignm length: | 375 |
| Alignm identity: | 229 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 49, 153 |
| Conread position: | 1-430 |
| Cow position: | |
| Alignm length: | 437 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 114 |
| Conread position: | 1-493 |
| Cow position: | |
| Alignm length: | 502 |
| Alignm identity: | 318 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 56, 20 |
| Conread position: | 1-503 |
| Cow position: | |
| Alignm length: | 513 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 153 |
| Conread position: | 1-570 |
| Cow position: | |
| Alignm length: | 601 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 153 |
| Conread position: | 1-623 |
| Cow position: | |
| Alignm length: | 640 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 197 |
| Conread position: | 1-631 |
| Cow position: | |
| Alignm length: | 641 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 163 |
| Conread position: | 1-633 |
| Cow position: | |
| Alignm length: | 649 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 239 |
| Conread position: | 1-633 |
| Cow position: | |
| Alignm length: | 648 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 408, 74 |
| Conread position: | 1-700 |
| Cow position: | |
| Alignm length: | 737 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 33 |
| Conread position: | 1-891 |
| Cow position: | |
| Alignm length: | 912 |
| Alignm identity: | 592 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 97 |
| Conread position: | 1-891 |
| Cow position: | |
| Alignm length: | 945 |
| Alignm identity: | 616 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 5 |
| Conread position: | 2-253 |
| Cow position: | |
| Alignm length: | 254 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 38, 24 |
| Conread position: | 2-518 |
| Cow position: | |
| Alignm length: | 522 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 125 |
| Conread position: | 2-534 |
| Cow position: | |
| Alignm length: | 546 |
| Alignm identity: | 345 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 50, 131 |
| Conread position: | 2-535 |
| Cow position: | |
| Alignm length: | 543 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 152 |
| Conread position: | 2-603 |
| Cow position: | |
| Alignm length: | 622 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 142 |
| Conread position: | 2-614 |
| Cow position: | |
| Alignm length: | 630 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 152 |
| Conread position: | 2-631 |
| Cow position: | |
| Alignm length: | 659 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 152 |
| Conread position: | 2-633 |
| Cow position: | |
| Alignm length: | 646 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 273 |
| Conread position: | 2-634 |
| Cow position: | |
| Alignm length: | 646 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 446, 60 |
| Conread position: | 2-634 |
| Cow position: | |
| Alignm length: | 649 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 151 |
| Conread position: | 2-634 |
| Cow position: | |
| Alignm length: | 648 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 108 |
| Conread position: | 2-634 |
| Cow position: | |
| Alignm length: | 649 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 149 |
| Conread position: | 2-634 |
| Cow position: | |
| Alignm length: | 649 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 153 |
| Conread position: | 3-346 |
| Cow position: | |
| Alignm length: | 348 |
| Alignm identity: | 227 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 57, 165 |
| Conread position: | 3-539 |
| Cow position: | |
| Alignm length: | 549 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 25 |
| Conread position: | 5-211 |
| Cow position: | |
| Alignm length: | 212 |
| Alignm identity: | 166 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 9, 80 |
| Conread position: | 5-1143 |
| Cow position: | |
| Alignm length: | 1159 |
| Alignm identity: | 861 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 59 |
| Conread position: | 6-264 |
| Cow position: | |
| Alignm length: | 263 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 10, 50 |
| Conread position: | 6-613 |
| Cow position: | |
| Alignm length: | 626 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 141 |
| Conread position: | 7-282 |
| Cow position: | |
| Alignm length: | 280 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 34, 28 |
| Conread position: | 7-291 |
| Cow position: | |
| Alignm length: | 292 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 46, 173 |
| Conread position: | 7-309 |
| Cow position: | |
| Alignm length: | 303 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 7-585 |
| Cow position: | |
| Alignm length: | 591 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 172 |
| Conread position: | 8-314 |
| Cow position: | |
| Alignm length: | 310 |
| Alignm identity: | 214 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 119, 38 |
| Conread position: | 8-323 |
| Cow position: | |
| Alignm length: | 318 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 57, 63 |
| Conread position: | 10-503 |
| Cow position: | |
| Alignm length: | 503 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 268 |
| Conread position: | 11-347 |
| Cow position: | |
| Alignm length: | 342 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 172 |
| Conread position: | 11-441 |
| Cow position: | |
| Alignm length: | 442 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 11-493 |
| Cow position: | |
| Alignm length: | 505 |
| Alignm identity: | 331 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 54, 86 |
| Conread position: | 11-603 |
| Cow position: | |
| Alignm length: | 612 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 160 |
| Conread position: | 11-634 |
| Cow position: | |
| Alignm length: | 641 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 5 |
| Conread position: | 11-634 |
| Cow position: | |
| Alignm length: | 640 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 143 |
| Conread position: | 11-634 |
| Cow position: | |
| Alignm length: | 644 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 143 |
| Conread position: | 11-646 |
| Cow position: | |
| Alignm length: | 659 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 143 |
| Conread position: | 11-667 |
| Cow position: | |
| Alignm length: | 680 |
| Alignm identity: | 490 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 142 |
| Conread position: | 11-717 |
| Cow position: | |
| Alignm length: | 726 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 52 |
| Conread position: | 11-880 |
| Cow position: | |
| Alignm length: | 892 |
| Alignm identity: | 575 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 139 |
| Conread position: | 11-884 |
| Cow position: | |
| Alignm length: | 913 |
| Alignm identity: | 599 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 23 |
| Conread position: | 11-907 |
| Cow position: | |
| Alignm length: | 922 |
| Alignm identity: | 684 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 140 |
| Conread position: | 11-911 |
| Cow position: | |
| Alignm length: | 941 |
| Alignm identity: | 614 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 143 |
| Conread position: | 12-630 |
| Cow position: | |
| Alignm length: | 623 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 450, 55 |
| Conread position: | 13-417 |
| Cow position: | |
| Alignm length: | 409 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 14 |
| Conread position: | 13-503 |
| Cow position: | |
| Alignm length: | 500 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 72 |
| Conread position: | 13-536 |
| Cow position: | |
| Alignm length: | 529 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 134 |
| Conread position: | 16-254 |
| Cow position: | |
| Alignm length: | 243 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 37, 131 |
| Conread position: | 16-307 |
| Cow position: | |
| Alignm length: | 296 |
| Alignm identity: | 207 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 37, 138 |
| Conread position: | 25-633 |
| Cow position: | |
| Alignm length: | 620 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 69 |
| Conread position: | 28-462 |
| Cow position: | |
| Alignm length: | 437 |
| Alignm identity: | 274 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 149, 20 |
| Conread position: | 39-256 |
| Cow position: | |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 51-307 |
| Cow position: | |
| Alignm length: | 263 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 17, 96 |
| Conread position: | 52-631 |
| Cow position: | |
| Alignm length: | 592 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 99 |
| Conread position: | 54-303 |
| Cow position: | |
| Alignm length: | 251 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 154, 26 |
| Conread position: | 54-712 |
| Cow position: | |
| Alignm length: | 674 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 8 |
| Conread position: | 56-347 |
| Cow position: | |
| Alignm length: | 293 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 200, 85 |
| Conread position: | 57-526 |
| Cow position: | |
| Alignm length: | 474 |
| Alignm identity: | 317 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 410, 8 |
| Conread position: | 61-261 |
| Cow position: | |
| Alignm length: | 205 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 65-340 |
| Cow position: | |
| Alignm length: | 277 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 273, 6 |
| Conread position: | 68-291 |
| Cow position: | |
| Alignm length: | 225 |
| Alignm identity: | 169 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 24, 83 |
| Conread position: | 68-890 |
| Cow position: | |
| Alignm length: | 831 |
| Alignm identity: | 579 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 407, 35 |
| Conread position: | 69-889 |
| Cow position: | |
| Alignm length: | 849 |
| Alignm identity: | 550 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 81 |
| Conread position: | 85-533 |
| Cow position: | |
| Alignm length: | 459 |
| Alignm identity: | 285 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 304, 57 |
| Conread position: | 87-889 |
| Cow position: | |
| Alignm length: | 837 |
| Alignm identity: | 523 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 55 |
| Conread position: | 104-270 |
| Cow position: | |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 155, 38 |
| Conread position: | 117-265 |
| Cow position: | |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 130-911 |
| Cow position: | |
| Alignm length: | 820 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 20 |
| Conread position: | 131-749 |
| Cow position: | |
| Alignm length: | 651 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 19 |
| Conread position: | 220-633 |
| Cow position: | |
| Alignm length: | 428 |
| Alignm identity: | 275 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 71, 59 |
| Conread position: | 234-911 |
| Cow position: | |
| Alignm length: | 696 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 20 |
| Conread position: | 253-1151 |
| Cow position: | |
| Alignm length: | 916 |
| Alignm identity: | 656 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 36 |
| Conread position: | 260-889 |
| Cow position: | |
| Alignm length: | 648 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 183 |
| Conread position: | 275-634 |
| Cow position: | |
| Alignm length: | 371 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 173, 56 |
| Conread position: | 299-633 |
| Cow position: | |
| Alignm length: | 341 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 166, 17 |
| Conread position: | 303-829 |
| Cow position: | |
| Alignm length: | 547 |
| Alignm identity: | 347 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 35, 108 |
| Conread position: | 306-633 |
| Cow position: | |
| Alignm length: | 337 |
| Alignm identity: | 230 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 160, 138 |
| Conread position: | 351-763 |
| Cow position: | |
| Alignm length: | 428 |
| Alignm identity: | 274 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 116, 362 |
| Conread position: | 351-911 |
| Cow position: | |
| Alignm length: | 574 |
| Alignm identity: | 358 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 116, 280 |
| Conread position: | 386-883 |
| Cow position: | |
| Alignm length: | 509 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 202 |
| Conread position: | 422-633 |
| Cow position: | |
| Alignm length: | 220 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 45, 79 |
| Conread position: | 606-858 |
| Cow position: | |
| Alignm length: | 253 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 0 |
| Conread position: | 611-922 |
| Cow position: | |
| Alignm length: | 316 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 58 |
| Conread position: | 616-846 |
| Cow position: | |
| Alignm length: | 233 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 702-890 |
| Cow position: | |
| Alignm length: | 190 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 717-1149 |
| Cow position: | |
| Alignm length: | 443 |
| Alignm identity: | 286 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 287, 38 |
| Conread position: | 889-1149 |
| Cow position: | |
| Alignm length: | 269 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 120, 15 |
| Conread position: | 902-1145 |
| Cow position: | |
| Alignm length: | 244 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 912-1146 |
| Cow position: | |
| Alignm length: | 241 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 947-1146 |
| Cow position: | |
| Alignm length: | 208 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 57, 0 |
Show alignments to all cow chromosomes.