Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01E040098.5 |
| Conread position: | 1-145 |
| Cow position: | |
| Alignm length: | 148 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-211 |
| Cow position: | |
| Alignm length: | 215 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 52, 145 |
| Conread position: | 1-240 |
| Cow position: | |
| Alignm length: | 246 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 53, 166 |
| Conread position: | 1-264 |
| Cow position: | |
| Alignm length: | 268 |
| Alignm identity: | 200 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 51, 98 |
| Conread position: | 1-279 |
| Cow position: | |
| Alignm length: | 283 |
| Alignm identity: | 206 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 51, 144 |
| Conread position: | 1-287 |
| Cow position: | |
| Alignm length: | 292 |
| Alignm identity: | 209 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 49, 129 |
| Conread position: | 1-291 |
| Cow position: | |
| Alignm length: | 301 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 152 |
| Conread position: | 1-324 |
| Cow position: | |
| Alignm length: | 328 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 137 |
| Conread position: | 1-370 |
| Cow position: | |
| Alignm length: | 376 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 28 |
| Conread position: | 1-458 |
| Cow position: | |
| Alignm length: | 462 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 153 |
| Conread position: | 1-518 |
| Cow position: | |
| Alignm length: | 530 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 9 |
| Conread position: | 1-540 |
| Cow position: | |
| Alignm length: | 563 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 153 |
| Conread position: | 1-546 |
| Cow position: | |
| Alignm length: | 571 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 154 |
| Conread position: | 1-633 |
| Cow position: | |
| Alignm length: | 645 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 144 |
| Conread position: | 1-633 |
| Cow position: | |
| Alignm length: | 643 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 113 |
| Conread position: | 1-634 |
| Cow position: | |
| Alignm length: | 656 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 153 |
| Conread position: | 1-672 |
| Cow position: | |
| Alignm length: | 694 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 99 |
| Conread position: | 1-888 |
| Cow position: | |
| Alignm length: | 929 |
| Alignm identity: | 592 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 61 |
| Conread position: | 1-889 |
| Cow position: | |
| Alignm length: | 926 |
| Alignm identity: | 592 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 279, 66 |
| Conread position: | 1-889 |
| Cow position: | |
| Alignm length: | 927 |
| Alignm identity: | 594 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 153 |
| Conread position: | 1-889 |
| Cow position: | |
| Alignm length: | 929 |
| Alignm identity: | 585 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 153 |
| Conread position: | 1-889 |
| Cow position: | |
| Alignm length: | 937 |
| Alignm identity: | 599 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 705 |
| Conread position: | 1-911 |
| Cow position: | |
| Alignm length: | 948 |
| Alignm identity: | 609 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 150 |
| Conread position: | 1-911 |
| Cow position: | |
| Alignm length: | 948 |
| Alignm identity: | 605 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 150 |
| Conread position: | 1-911 |
| Cow position: | |
| Alignm length: | 953 |
| Alignm identity: | 615 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 153 |
| Conread position: | 2-126 |
| Cow position: | |
| Alignm length: | 129 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 2-215 |
| Cow position: | |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 51, 124 |
| Conread position: | 2-300 |
| Cow position: | |
| Alignm length: | 305 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 126 |
| Conread position: | 2-404 |
| Cow position: | |
| Alignm length: | 407 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 145 |
| Conread position: | 2-405 |
| Cow position: | |
| Alignm length: | 408 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 152 |
| Conread position: | 2-545 |
| Cow position: | |
| Alignm length: | 548 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 446, 31 |
| Conread position: | 2-613 |
| Cow position: | |
| Alignm length: | 631 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 143 |
| Conread position: | 2-616 |
| Cow position: | |
| Alignm length: | 644 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 350 |
| Conread position: | 2-634 |
| Cow position: | |
| Alignm length: | 650 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 149 |
| Conread position: | 2-682 |
| Cow position: | |
| Alignm length: | 704 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 140 |
| Conread position: | 3-527 |
| Cow position: | |
| Alignm length: | 536 |
| Alignm identity: | 342 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 21, 87 |
| Conread position: | 7-520 |
| Cow position: | |
| Alignm length: | 519 |
| Alignm identity: | 339 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 166, 16 |
| Conread position: | 7-631 |
| Cow position: | |
| Alignm length: | 639 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 237 |
| Conread position: | 7-889 |
| Cow position: | |
| Alignm length: | 919 |
| Alignm identity: | 608 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 147 |
| Conread position: | 10-718 |
| Cow position: | |
| Alignm length: | 720 |
| Alignm identity: | 496 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 136 |
| Conread position: | 11-207 |
| Cow position: | |
| Alignm length: | 201 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 45, 142 |
| Conread position: | 11-301 |
| Cow position: | |
| Alignm length: | 298 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 118 |
| Conread position: | 11-518 |
| Cow position: | |
| Alignm length: | 514 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 141 |
| Conread position: | 11-527 |
| Cow position: | |
| Alignm length: | 537 |
| Alignm identity: | 351 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 30, 18 |
| Conread position: | 11-555 |
| Cow position: | |
| Alignm length: | 571 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 143 |
| Conread position: | 11-633 |
| Cow position: | |
| Alignm length: | 655 |
| Alignm identity: | 416 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 49, 76 |
| Conread position: | 11-889 |
| Cow position: | |
| Alignm length: | 911 |
| Alignm identity: | 589 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 141 |
| Conread position: | 12-314 |
| Cow position: | |
| Alignm length: | 307 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 68 |
| Conread position: | 13-267 |
| Cow position: | |
| Alignm length: | 256 |
| Alignm identity: | 190 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 10, 34 |
| Conread position: | 13-331 |
| Cow position: | |
| Alignm length: | 319 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 13-370 |
| Cow position: | |
| Alignm length: | 358 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 13-520 |
| Cow position: | |
| Alignm length: | 514 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 98 |
| Conread position: | 13-1146 |
| Cow position: | |
| Alignm length: | 1152 |
| Alignm identity: | 820 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 95 |
| Conread position: | 18-542 |
| Cow position: | |
| Alignm length: | 533 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 134 |
| Conread position: | 23-633 |
| Cow position: | |
| Alignm length: | 621 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 131 |
| Conread position: | 25-627 |
| Cow position: | |
| Alignm length: | 625 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 129 |
| Conread position: | 28-633 |
| Cow position: | |
| Alignm length: | 616 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 297, 33 |
| Conread position: | 52-270 |
| Cow position: | |
| Alignm length: | 222 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 12, 93 |
| Conread position: | 55-291 |
| Cow position: | |
| Alignm length: | 237 |
| Alignm identity: | 173 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 55-525 |
| Cow position: | |
| Alignm length: | 478 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 39 |
| Conread position: | 58-541 |
| Cow position: | |
| Alignm length: | 487 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 409, 95 |
| Conread position: | 60-536 |
| Cow position: | |
| Alignm length: | 484 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 90 |
| Conread position: | 61-300 |
| Cow position: | |
| Alignm length: | 243 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 43, 118 |
| Conread position: | 75-520 |
| Cow position: | |
| Alignm length: | 451 |
| Alignm identity: | 294 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 157, 67 |
| Conread position: | 82-834 |
| Cow position: | |
| Alignm length: | 788 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 71 |
| Conread position: | 89-456 |
| Cow position: | |
| Alignm length: | 368 |
| Alignm identity: | 238 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 93-826 |
| Cow position: | |
| Alignm length: | 758 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 308 |
| Conread position: | 94-523 |
| Cow position: | |
| Alignm length: | 435 |
| Alignm identity: | 281 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 362, 48 |
| Conread position: | 116-628 |
| Cow position: | |
| Alignm length: | 523 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 350, 37 |
| Conread position: | 121-270 |
| Cow position: | |
| Alignm length: | 150 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 154-329 |
| Cow position: | |
| Alignm length: | 176 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 197-636 |
| Cow position: | |
| Alignm length: | 460 |
| Alignm identity: | 296 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 214, 41 |
| Conread position: | 207-631 |
| Cow position: | |
| Alignm length: | 435 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 259, 11 |
| Conread position: | 239-493 |
| Cow position: | |
| Alignm length: | 257 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 192, 94 |
| Conread position: | 254-591 |
| Cow position: | |
| Alignm length: | 347 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 212, 47 |
| Conread position: | 262-633 |
| Cow position: | |
| Alignm length: | 378 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 11 |
| Conread position: | 263-631 |
| Cow position: | |
| Alignm length: | 380 |
| Alignm identity: | 257 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 203, 34 |
| Conread position: | 267-631 |
| Cow position: | |
| Alignm length: | 374 |
| Alignm identity: | 262 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 30, 168 |
| Conread position: | 276-630 |
| Cow position: | |
| Alignm length: | 363 |
| Alignm identity: | 254 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 21, 74 |
| Conread position: | 293-527 |
| Cow position: | |
| Alignm length: | 239 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 173, 46 |
| Conread position: | 294-503 |
| Cow position: | |
| Alignm length: | 210 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 342-631 |
| Cow position: | |
| Alignm length: | 297 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 33, 17 |
| Conread position: | 351-622 |
| Cow position: | |
| Alignm length: | 282 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 116, 68 |
| Conread position: | 354-831 |
| Cow position: | |
| Alignm length: | 485 |
| Alignm identity: | 305 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 212, 93 |
| Conread position: | 355-631 |
| Cow position: | |
| Alignm length: | 285 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 111, 16 |
| Conread position: | 358-632 |
| Cow position: | |
| Alignm length: | 285 |
| Alignm identity: | 190 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 26, 234 |
| Conread position: | 520-1140 |
| Cow position: | |
| Alignm length: | 636 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 70 |
| Conread position: | 540-837 |
| Cow position: | |
| Alignm length: | 306 |
| Alignm identity: | 218 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 36, 186 |
| Conread position: | 576-889 |
| Cow position: | |
| Alignm length: | 317 |
| Alignm identity: | 199 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 9, 151 |
| Conread position: | 583-1146 |
| Cow position: | |
| Alignm length: | 576 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 320, 49 |
| Conread position: | 608-890 |
| Cow position: | |
| Alignm length: | 285 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 165, 192 |
| Conread position: | 656-884 |
| Cow position: | |
| Alignm length: | 231 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 99, 142 |
| Conread position: | 660-837 |
| Cow position: | |
| Alignm length: | 183 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 134, 153 |
| Conread position: | 717-1134 |
| Cow position: | |
| Alignm length: | 424 |
| Alignm identity: | 267 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 38, 111 |
| Conread position: | 722-857 |
| Cow position: | |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 32, 65 |
Show alignments to all cow chromosomes.