Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01E040098.5 |
| Conread position: | 1-134 |
| Cow position: | chr18:53785786-53785652 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 51, 128 |
| Conread position: | 1-138 |
| Cow position: | chr18:54269413-54269276 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 103 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-170 |
| Cow position: | chr18:16533926-16533759 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 51, 66 |
| Conread position: | 1-266 |
| Cow position: | chr18:33268788-33268524 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 153 |
| Conread position: | 1-270 |
| Cow position: | chr18:2019739-2020005 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 150 |
| Conread position: | 1-270 |
| Cow position: | chr18:23944424-23944695 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 154 |
| Conread position: | 1-276 |
| Cow position: | chr18:22602434-22602157 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 204 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 49, 99 |
| Conread position: | 1-291 |
| Cow position: | chr18:48221824-48221534 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 134 |
| Conread position: | 1-330 |
| Cow position: | chr18:37599580-37599913 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 230 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 52, 146 |
| Conread position: | 1-525 |
| Cow position: | chr18:47741965-47741439 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 153 |
| Conread position: | 1-629 |
| Cow position: | chr18:33358814-33358200 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 145 |
| Conread position: | 1-632 |
| Cow position: | chr18:1521078-1520474 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 155 |
| Conread position: | 1-633 |
| Cow position: | chr18:39748525-39747921 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 144 |
| Conread position: | 1-634 |
| Cow position: | chr18:51257930-51257326 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 154 |
| Conread position: | 1-834 |
| Cow position: | chr18:44621706-44620838 (view UCSC Genome Browser custom track) |
| Alignm length: | 871 |
| Alignm identity: | 565 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 176 |
| Conread position: | 1-889 |
| Cow position: | chr18:16078646-16077731 (view UCSC Genome Browser custom track) |
| Alignm length: | 921 |
| Alignm identity: | 595 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 367, 142 |
| Conread position: | 1-889 |
| Cow position: | chr18:19352333-19351405 (view UCSC Genome Browser custom track) |
| Alignm length: | 933 |
| Alignm identity: | 610 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 175 |
| Conread position: | 1-889 |
| Cow position: | chr18:51660364-51659448 (view UCSC Genome Browser custom track) |
| Alignm length: | 926 |
| Alignm identity: | 589 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 153 |
| Conread position: | 1-889 |
| Cow position: | chr18:55088978-55089900 (view UCSC Genome Browser custom track) |
| Alignm length: | 926 |
| Alignm identity: | 601 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 153 |
| Conread position: | 1-911 |
| Cow position: | chr18:33953620-33954569 (view UCSC Genome Browser custom track) |
| Alignm length: | 957 |
| Alignm identity: | 588 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 124 |
| Conread position: | 2-200 |
| Cow position: | chr18:51464529-51464725 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 48, 65 |
| Conread position: | 2-240 |
| Cow position: | chr18:19539927-19540164 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 50, 141 |
| Conread position: | 2-252 |
| Cow position: | chr18:27986974-27986723 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 186 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 51, 73 |
| Conread position: | 2-264 |
| Cow position: | chr18:40478329-40478067 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 51, 143 |
| Conread position: | 2-267 |
| Cow position: | chr18:51310528-51310266 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 203 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 50, 27 |
| Conread position: | 2-330 |
| Cow position: | chr18:14415922-14415596 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 149 |
| Conread position: | 2-446 |
| Cow position: | chr18:51480783-51480352 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 149 |
| Conread position: | 2-501 |
| Cow position: | chr18:16176661-16177160 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 143 |
| Conread position: | 2-506 |
| Cow position: | chr18:27838357-27838849 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 145 |
| Conread position: | 2-613 |
| Cow position: | chr18:28973957-28974557 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 125 |
| Conread position: | 2-632 |
| Cow position: | chr18:41840879-41841509 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 152 |
| Conread position: | 2-634 |
| Cow position: | chr18:23797595-23796969 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 149 |
| Conread position: | 2-672 |
| Cow position: | chr18:37585716-37586422 (view UCSC Genome Browser custom track) |
| Alignm length: | 712 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 99 |
| Conread position: | 6-286 |
| Cow position: | chr18:47719627-47719909 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 7-265 |
| Cow position: | chr18:17992621-17992880 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 78 |
| Conread position: | 7-314 |
| Cow position: | chr18:54171902-54172211 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 138 |
| Conread position: | 7-520 |
| Cow position: | chr18:32293716-32293225 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 131 |
| Conread position: | 11-163 |
| Cow position: | chr18:6869321-6869474 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 41, 62 |
| Conread position: | 11-260 |
| Cow position: | chr18:32651932-32651682 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 191 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 38, 29 |
| Conread position: | 11-474 |
| Cow position: | chr18:9186828-9187277 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 294 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 61, 124 |
| Conread position: | 11-503 |
| Cow position: | chr18:25349976-25349492 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 143 |
| Conread position: | 11-522 |
| Cow position: | chr18:33335805-33335297 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 139 |
| Conread position: | 11-603 |
| Cow position: | chr18:16660067-16660664 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 143 |
| Conread position: | 11-613 |
| Cow position: | chr18:36508271-36507666 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 144 |
| Conread position: | 11-613 |
| Cow position: | chr18:37505000-37504405 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 141 |
| Conread position: | 11-629 |
| Cow position: | chr18:43146987-43147590 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 146 |
| Conread position: | 11-633 |
| Cow position: | chr18:35335426-35334814 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 256 |
| Conread position: | 16-518 |
| Cow position: | chr18:54024427-54024930 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 46 |
| Conread position: | 23-889 |
| Cow position: | chr18:11275178-11276051 (view UCSC Genome Browser custom track) |
| Alignm length: | 899 |
| Alignm identity: | 580 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 11 |
| Conread position: | 26-520 |
| Cow position: | chr18:45958613-45958135 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 116 |
| Conread position: | 35-837 |
| Cow position: | chr18:54002405-54001577 (view UCSC Genome Browser custom track) |
| Alignm length: | 834 |
| Alignm identity: | 545 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 30 |
| Conread position: | 55-474 |
| Cow position: | chr18:14130183-14129779 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 58-494 |
| Cow position: | chr18:35288136-35287714 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 303 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 197, 69 |
| Conread position: | 88-426 |
| Cow position: | chr18:42244699-42245013 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 235 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 43, 63 |
| Conread position: | 114-627 |
| Cow position: | chr18:53785315-53784829 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 79 |
| Conread position: | 114-760 |
| Cow position: | chr18:29236609-29235952 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 502 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 352, 36 |
| Conread position: | 130-694 |
| Cow position: | chr18:23746158-23746752 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 386 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 34, 20 |
| Conread position: | 152-540 |
| Cow position: | chr18:29763280-29762895 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 40 |
| Conread position: | 176-535 |
| Cow position: | chr18:43200564-43200210 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 291, 96 |
| Conread position: | 230-575 |
| Cow position: | chr18:17993017-17993363 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 219 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 236, 160 |
| Conread position: | 242-634 |
| Cow position: | chr18:40477849-40477463 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 271 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 206, 89 |
| Conread position: | 254-634 |
| Cow position: | chr18:32651643-32651268 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 268 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 194, 77 |
| Conread position: | 258-520 |
| Cow position: | chr18:30198372-30198107 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 196 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 161, 53 |
| Conread position: | 304-566 |
| Cow position: | chr18:54172421-54172681 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 174 |
| Conread position: | 311-633 |
| Cow position: | chr18:2020244-2020571 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 103 |
| Conread position: | 358-631 |
| Cow position: | chr18:33268484-33268207 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 108, 202 |
| Conread position: | 511-725 |
| Cow position: | chr18:33335088-33334867 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 56, 128 |
| Conread position: | 547-1140 |
| Cow position: | chr18:43199668-43199059 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 115 |
| Conread position: | 663-845 |
| Cow position: | chr18:3099843-3100028 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 35, 42 |
| Conread position: | 902-1141 |
| Cow position: | chr18:6870933-6871180 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 902-1149 |
| Cow position: | chr18:33358012-33357760 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 902-1152 |
| Cow position: | chr18:3100108-3100367 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 106, 143 |
| Conread position: | 933-1134 |
| Cow position: | chr18:35334578-35334369 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 76, 0 |
Show alignments to all cow chromosomes.