Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01E040098.5 |
| Conread position: | 1-128 |
| Cow position: | chr19:27052814-27052943 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 101 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 1-267 |
| Cow position: | chr19:32665481-32665216 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 29 |
| Conread position: | 1-270 |
| Cow position: | chr19:30372233-30371956 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 83 |
| Conread position: | 1-370 |
| Cow position: | chr19:548338-547972 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 261 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 42, 48 |
| Conread position: | 1-390 |
| Cow position: | chr19:377924-378313 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 9 |
| Conread position: | 1-407 |
| Cow position: | chr19:28593228-28592811 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 296 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 52, 164 |
| Conread position: | 1-418 |
| Cow position: | chr19:32244635-32244209 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 157 |
| Conread position: | 1-516 |
| Cow position: | chr19:416604-416108 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 182 |
| Conread position: | 1-542 |
| Cow position: | chr19:32223488-32224000 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 465, 52 |
| Conread position: | 1-631 |
| Cow position: | chr19:32237906-32238509 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 151 |
| Conread position: | 1-657 |
| Cow position: | chr19:34371-33712 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 490 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 84 |
| Conread position: | 1-708 |
| Cow position: | chr19:685794-685059 (view UCSC Genome Browser custom track) |
| Alignm length: | 753 |
| Alignm identity: | 490 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 45 |
| Conread position: | 1-751 |
| Cow position: | chr19:37847-37071 (view UCSC Genome Browser custom track) |
| Alignm length: | 791 |
| Alignm identity: | 516 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 61 |
| Conread position: | 1-826 |
| Cow position: | chr19:32193528-32192674 (view UCSC Genome Browser custom track) |
| Alignm length: | 868 |
| Alignm identity: | 553 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 154 |
| Conread position: | 1-889 |
| Cow position: | chr19:772550-771646 (view UCSC Genome Browser custom track) |
| Alignm length: | 922 |
| Alignm identity: | 595 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 107 |
| Conread position: | 1-889 |
| Cow position: | chr19:7342019-7341104 (view UCSC Genome Browser custom track) |
| Alignm length: | 926 |
| Alignm identity: | 610 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 83 |
| Conread position: | 1-889 |
| Cow position: | chr19:32212119-32213031 (view UCSC Genome Browser custom track) |
| Alignm length: | 923 |
| Alignm identity: | 593 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 150 |
| Conread position: | 2-264 |
| Cow position: | chr19:7488263-7487999 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 195 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 60, 152 |
| Conread position: | 2-267 |
| Cow position: | chr19:1032056-1031797 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 141 |
| Conread position: | 2-275 |
| Cow position: | chr19:893663-893927 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 196, 48 |
| Conread position: | 2-300 |
| Cow position: | chr19:439693-439996 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 216 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 51, 155 |
| Conread position: | 2-307 |
| Cow position: | chr19:20125571-20125278 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 222 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 61, 126 |
| Conread position: | 2-518 |
| Cow position: | chr19:4385435-4384918 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 152 |
| Conread position: | 2-538 |
| Cow position: | chr19:33941562-33941037 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 152 |
| Conread position: | 2-545 |
| Cow position: | chr19:10672356-10672889 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 152 |
| Conread position: | 2-545 |
| Cow position: | chr19:55078696-55078164 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 152 |
| Conread position: | 2-624 |
| Cow position: | chr19:172161-171545 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 152 |
| Conread position: | 2-631 |
| Cow position: | chr19:4532797-4533431 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 123 |
| Conread position: | 2-634 |
| Cow position: | chr19:39390467-39389853 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 446, 98 |
| Conread position: | 3-634 |
| Cow position: | chr19:203912-203285 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 171 |
| Conread position: | 6-493 |
| Cow position: | chr19:35979212-35978737 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 331 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 37, 9 |
| Conread position: | 7-347 |
| Cow position: | chr19:40887701-40888044 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 149 |
| Conread position: | 7-834 |
| Cow position: | chr19:52152315-52153159 (view UCSC Genome Browser custom track) |
| Alignm length: | 865 |
| Alignm identity: | 569 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 144 |
| Conread position: | 11-269 |
| Cow position: | chr19:15953796-15953558 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 11-271 |
| Cow position: | chr19:170799-171064 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 192 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 11-324 |
| Cow position: | chr19:20111283-20111601 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 11-521 |
| Cow position: | chr19:76300-76805 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 42 |
| Conread position: | 11-539 |
| Cow position: | chr19:42649134-42649642 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 348 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 41, 61 |
| Conread position: | 11-629 |
| Cow position: | chr19:29209502-29208904 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 88 |
| Conread position: | 11-633 |
| Cow position: | chr19:4252417-4253025 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 142 |
| Conread position: | 11-634 |
| Cow position: | chr19:28581713-28582311 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 81 |
| Conread position: | 11-638 |
| Cow position: | chr19:40852489-40853113 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 143 |
| Conread position: | 11-889 |
| Cow position: | chr19:43143657-43142749 (view UCSC Genome Browser custom track) |
| Alignm length: | 915 |
| Alignm identity: | 583 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 280 |
| Conread position: | 12-221 |
| Cow position: | chr19:39546564-39546365 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 201, 134 |
| Conread position: | 12-265 |
| Cow position: | chr19:39688483-39688235 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 34 |
| Conread position: | 12-291 |
| Cow position: | chr19:31341646-31341383 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 52, 71 |
| Conread position: | 12-414 |
| Cow position: | chr19:30755118-30754717 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 269 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 42, 135 |
| Conread position: | 13-336 |
| Cow position: | chr19:35376497-35376180 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 235 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 14, 72 |
| Conread position: | 13-565 |
| Cow position: | chr19:261375-260821 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 103 |
| Conread position: | 35-515 |
| Cow position: | chr19:6553309-6552854 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 106 |
| Conread position: | 35-535 |
| Cow position: | chr19:36477271-36476786 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 106 |
| Conread position: | 51-629 |
| Cow position: | chr19:350670-351227 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 396 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 95, 19 |
| Conread position: | 70-634 |
| Cow position: | chr19:33873117-33872557 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 395, 81 |
| Conread position: | 99-633 |
| Cow position: | chr19:801840-801326 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 49 |
| Conread position: | 100-255 |
| Cow position: | chr19:25622569-25622722 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 114-455 |
| Cow position: | chr19:544056-544400 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 36 |
| Conread position: | 127-585 |
| Cow position: | chr19:27053013-27053464 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 377, 23 |
| Conread position: | 177-494 |
| Cow position: | chr19:561930-562242 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 223 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 202, 116 |
| Conread position: | 209-466 |
| Cow position: | chr19:1492282-1492537 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 29, 11 |
| Conread position: | 213-535 |
| Cow position: | chr19:439888-440209 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 25, 42 |
| Conread position: | 213-585 |
| Cow position: | chr19:1031872-1031501 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 262 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 73, 27 |
| Conread position: | 233-614 |
| Cow position: | chr19:893843-894223 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 270 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 215, 98 |
| Conread position: | 253-632 |
| Cow position: | chr19:7487758-7487385 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 262 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 195, 87 |
| Conread position: | 263-633 |
| Cow position: | chr19:39546366-39546021 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 257 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 111, 29 |
| Conread position: | 279-672 |
| Cow position: | chr19:352966-353336 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 276 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 18, 103 |
| Conread position: | 298-631 |
| Cow position: | chr19:24748623-24748275 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 39 |
| Conread position: | 306-889 |
| Cow position: | chr19:495354-494758 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 363 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 9, 499 |
| Conread position: | 351-660 |
| Cow position: | chr19:26271832-26272152 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 116, 183 |
| Conread position: | 353-631 |
| Cow position: | chr19:32665176-32664889 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 202 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 114, 101 |
| Conread position: | 353-1146 |
| Cow position: | chr19:39687626-39686820 (view UCSC Genome Browser custom track) |
| Alignm length: | 813 |
| Alignm identity: | 582 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 199 |
| Conread position: | 358-629 |
| Cow position: | chr19:30371662-30371396 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 198 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 110, 38 |
| Conread position: | 396-633 |
| Cow position: | chr19:31340441-31340199 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 63, 117 |
| Conread position: | 558-1140 |
| Cow position: | chr19:32224172-32224745 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 74 |
| Conread position: | 580-1079 |
| Cow position: | chr19:27054884-27055385 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 325 |
| Conread position: | 705-1146 |
| Cow position: | chr19:33722-33277 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 90 |
| Conread position: | 817-1146 |
| Cow position: | chr19:260793-260462 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 85 |
| Conread position: | 875-1047 |
| Cow position: | chr19:14527706-14527529 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 130, 30 |
| Conread position: | 902-1141 |
| Cow position: | chr19:32664703-32664455 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 40, 0 |
Show alignments to all cow chromosomes.