Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01E040098.5 |
| Conread position: | 1-151 |
| Cow position: | chr20:9954075-9954216 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 1-167 |
| Cow position: | chr20:19192220-19192389 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 49, 97 |
| Conread position: | 1-270 |
| Cow position: | chr20:3032837-3032575 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 1-281 |
| Cow position: | chr20:5560807-5561089 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 97 |
| Conread position: | 1-516 |
| Cow position: | chr20:28593656-28593136 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 114 |
| Conread position: | 1-527 |
| Cow position: | chr20:29572279-29572799 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 338 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 97, 92 |
| Conread position: | 1-633 |
| Cow position: | chr20:3252225-3252848 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 170 |
| Conread position: | 1-633 |
| Cow position: | chr20:5484100-5483503 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 90 |
| Conread position: | 1-712 |
| Cow position: | chr20:21393478-21392771 (view UCSC Genome Browser custom track) |
| Alignm length: | 723 |
| Alignm identity: | 502 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 142 |
| Conread position: | 1-742 |
| Cow position: | chr20:18315677-18316413 (view UCSC Genome Browser custom track) |
| Alignm length: | 759 |
| Alignm identity: | 541 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 9 |
| Conread position: | 1-746 |
| Cow position: | chr20:15064677-15063913 (view UCSC Genome Browser custom track) |
| Alignm length: | 770 |
| Alignm identity: | 567 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 301 |
| Conread position: | 1-889 |
| Cow position: | chr20:19437866-19436956 (view UCSC Genome Browser custom track) |
| Alignm length: | 928 |
| Alignm identity: | 612 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 153 |
| Conread position: | 2-173 |
| Cow position: | chr20:35119232-35119059 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 51, 145 |
| Conread position: | 2-264 |
| Cow position: | chr20:28565689-28565957 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 195 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 51, 156 |
| Conread position: | 2-348 |
| Cow position: | chr20:4799744-4800085 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 286, 60 |
| Conread position: | 2-525 |
| Cow position: | chr20:5534846-5534335 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 149 |
| Conread position: | 2-533 |
| Cow position: | chr20:28160689-28160149 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 153 |
| Conread position: | 2-580 |
| Cow position: | chr20:23469752-23470335 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 153 |
| Conread position: | 2-633 |
| Cow position: | chr20:8313529-8314134 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 140 |
| Conread position: | 2-634 |
| Cow position: | chr20:12438854-12439465 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 152 |
| Conread position: | 2-634 |
| Cow position: | chr20:13762809-13762188 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 446, 148 |
| Conread position: | 2-634 |
| Cow position: | chr20:23798789-23798153 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 152 |
| Conread position: | 2-634 |
| Cow position: | chr20:25851083-25851711 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 152 |
| Conread position: | 2-634 |
| Cow position: | chr20:27869104-27868475 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 152 |
| Conread position: | 2-1144 |
| Cow position: | chr20:10102642-10103754 (view UCSC Genome Browser custom track) |
| Alignm length: | 1150 |
| Alignm identity: | 845 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 149 |
| Conread position: | 3-535 |
| Cow position: | chr20:22717789-22718278 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 341 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 371, 89 |
| Conread position: | 6-334 |
| Cow position: | chr20:2677020-2676694 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 214 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 63, 76 |
| Conread position: | 10-268 |
| Cow position: | chr20:3270610-3270362 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 193 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 11-270 |
| Cow position: | chr20:24614444-24614187 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 11-286 |
| Cow position: | chr20:10846180-10846454 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 136 |
| Conread position: | 11-338 |
| Cow position: | chr20:20755523-20755857 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 222 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 22, 156 |
| Conread position: | 11-339 |
| Cow position: | chr20:20905289-20905611 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 38, 92 |
| Conread position: | 11-503 |
| Cow position: | chr20:30684237-30683751 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 143 |
| Conread position: | 11-527 |
| Cow position: | chr20:7116571-7117085 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 136 |
| Conread position: | 11-887 |
| Cow position: | chr20:11276398-11277265 (view UCSC Genome Browser custom track) |
| Alignm length: | 895 |
| Alignm identity: | 642 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 140 |
| Conread position: | 12-285 |
| Cow position: | chr20:15097981-15098246 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 192 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 249, 47 |
| Conread position: | 13-470 |
| Cow position: | chr20:2791450-2791913 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 295 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 114, 121 |
| Conread position: | 13-634 |
| Cow position: | chr20:21914222-21913612 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 140 |
| Conread position: | 24-488 |
| Cow position: | chr20:5575564-5575130 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 316 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 28, 124 |
| Conread position: | 55-540 |
| Cow position: | chr20:8004662-8005133 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 96 |
| Conread position: | 56-329 |
| Cow position: | chr20:8993968-8994238 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 167, 68 |
| Conread position: | 60-889 |
| Cow position: | chr20:822596-821769 (view UCSC Genome Browser custom track) |
| Alignm length: | 846 |
| Alignm identity: | 526 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 91 |
| Conread position: | 68-889 |
| Cow position: | chr20:31124243-31123392 (view UCSC Genome Browser custom track) |
| Alignm length: | 860 |
| Alignm identity: | 545 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 28 |
| Conread position: | 71-347 |
| Cow position: | chr20:29948020-29947746 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 96-856 |
| Cow position: | chr20:13681282-13682025 (view UCSC Genome Browser custom track) |
| Alignm length: | 772 |
| Alignm identity: | 543 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 371, 52 |
| Conread position: | 110-629 |
| Cow position: | chr20:15291843-15291340 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 338, 40 |
| Conread position: | 120-613 |
| Cow position: | chr20:35119032-35118542 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 328, 30 |
| Conread position: | 135-270 |
| Cow position: | chr20:19005859-19005989 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 175-619 |
| Cow position: | chr20:19192911-19192434 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 308 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 191-629 |
| Cow position: | chr20:3032717-3032277 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 300 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 51, 15 |
| Conread position: | 206-631 |
| Cow position: | chr20:19005905-19006322 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 295 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 88, 12 |
| Conread position: | 275-682 |
| Cow position: | chr20:10846663-10847064 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 16 |
| Conread position: | 290-631 |
| Cow position: | chr20:4799997-4800331 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 42 |
| Conread position: | 358-605 |
| Cow position: | chr20:15098496-15098753 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 86, 182 |
| Conread position: | 358-631 |
| Cow position: | chr20:24614144-24613874 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 108, 197 |
| Conread position: | 374-887 |
| Cow position: | chr20:1058181-1058706 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 326 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 92, 429 |
| Conread position: | 654-1145 |
| Cow position: | chr20:9521597-9522104 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 254 |
| Conread position: | 705-1141 |
| Cow position: | chr20:19006352-19006788 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 290 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 52, 144 |
| Conread position: | 709-1140 |
| Cow position: | chr20:31847483-31847915 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 280 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 45, 197 |
| Conread position: | 760-1013 |
| Cow position: | chr20:18316411-18316664 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 185, 142 |
| Conread position: | 775-1149 |
| Cow position: | chr20:9955696-9956079 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 257 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 73, 90 |
| Conread position: | 902-1146 |
| Cow position: | chr20:3253036-3253284 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 104, 167 |
| Conread position: | 902-1149 |
| Cow position: | chr20:8314340-8314589 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 110, 84 |
Show alignments to all cow chromosomes.