Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01E040098.5 |
| Conread position: | 1-251 |
| Cow position: | |
| Alignm length: | 255 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 52, 153 |
| Conread position: | 1-264 |
| Cow position: | |
| Alignm length: | 267 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 152 |
| Conread position: | 1-265 |
| Cow position: | |
| Alignm length: | 270 |
| Alignm identity: | 183 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 22, 84 |
| Conread position: | 1-269 |
| Cow position: | |
| Alignm length: | 274 |
| Alignm identity: | 206 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 51, 109 |
| Conread position: | 1-270 |
| Cow position: | |
| Alignm length: | 274 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 99 |
| Conread position: | 1-291 |
| Cow position: | |
| Alignm length: | 294 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 232 |
| Conread position: | 1-366 |
| Cow position: | |
| Alignm length: | 372 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 104 |
| Conread position: | 1-368 |
| Cow position: | |
| Alignm length: | 370 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 94 |
| Conread position: | 1-370 |
| Cow position: | |
| Alignm length: | 378 |
| Alignm identity: | 255 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 51, 140 |
| Conread position: | 1-440 |
| Cow position: | |
| Alignm length: | 465 |
| Alignm identity: | 308 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 51, 130 |
| Conread position: | 1-468 |
| Cow position: | |
| Alignm length: | 471 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 54 |
| Conread position: | 1-530 |
| Cow position: | |
| Alignm length: | 539 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 61 |
| Conread position: | 1-533 |
| Cow position: | |
| Alignm length: | 541 |
| Alignm identity: | 360 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 51, 30 |
| Conread position: | 1-624 |
| Cow position: | |
| Alignm length: | 633 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 467, 69 |
| Conread position: | 1-629 |
| Cow position: | |
| Alignm length: | 641 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 409, 149 |
| Conread position: | 1-631 |
| Cow position: | |
| Alignm length: | 646 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 110 |
| Conread position: | 1-631 |
| Cow position: | |
| Alignm length: | 646 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 83 |
| Conread position: | 1-632 |
| Cow position: | |
| Alignm length: | 643 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 52 |
| Conread position: | 1-749 |
| Cow position: | |
| Alignm length: | 788 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 172 |
| Conread position: | 1-883 |
| Cow position: | |
| Alignm length: | 897 |
| Alignm identity: | 609 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 458, 54 |
| Conread position: | 1-889 |
| Cow position: | |
| Alignm length: | 927 |
| Alignm identity: | 608 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 143 |
| Conread position: | 1-889 |
| Cow position: | |
| Alignm length: | 926 |
| Alignm identity: | 589 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 96 |
| Conread position: | 1-889 |
| Cow position: | |
| Alignm length: | 928 |
| Alignm identity: | 594 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 153 |
| Conread position: | 1-889 |
| Cow position: | |
| Alignm length: | 928 |
| Alignm identity: | 595 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 153 |
| Conread position: | 1-889 |
| Cow position: | |
| Alignm length: | 930 |
| Alignm identity: | 605 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 152 |
| Conread position: | 1-911 |
| Cow position: | |
| Alignm length: | 955 |
| Alignm identity: | 597 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 146 |
| Conread position: | 1-911 |
| Cow position: | |
| Alignm length: | 935 |
| Alignm identity: | 604 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 150 |
| Conread position: | 1-911 |
| Cow position: | |
| Alignm length: | 945 |
| Alignm identity: | 605 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 290, 66 |
| Conread position: | 1-911 |
| Cow position: | |
| Alignm length: | 949 |
| Alignm identity: | 585 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 136 |
| Conread position: | 1-911 |
| Cow position: | |
| Alignm length: | 951 |
| Alignm identity: | 592 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 167 |
| Conread position: | 2-158 |
| Cow position: | |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 2-312 |
| Cow position: | |
| Alignm length: | 311 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 2-535 |
| Cow position: | |
| Alignm length: | 546 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 153 |
| Conread position: | 2-594 |
| Cow position: | |
| Alignm length: | 608 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 152 |
| Conread position: | 2-629 |
| Cow position: | |
| Alignm length: | 640 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 154 |
| Conread position: | 2-632 |
| Cow position: | |
| Alignm length: | 641 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 155 |
| Conread position: | 2-634 |
| Cow position: | |
| Alignm length: | 638 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 77 |
| Conread position: | 2-634 |
| Cow position: | |
| Alignm length: | 646 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 446, 48 |
| Conread position: | 2-634 |
| Cow position: | |
| Alignm length: | 650 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 38 |
| Conread position: | 2-634 |
| Cow position: | |
| Alignm length: | 647 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 146 |
| Conread position: | 2-634 |
| Cow position: | |
| Alignm length: | 647 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 134 |
| Conread position: | 2-888 |
| Cow position: | |
| Alignm length: | 924 |
| Alignm identity: | 607 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 153 |
| Conread position: | 3-307 |
| Cow position: | |
| Alignm length: | 310 |
| Alignm identity: | 199 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 59, 88 |
| Conread position: | 7-271 |
| Cow position: | |
| Alignm length: | 267 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 9, 30 |
| Conread position: | 7-329 |
| Cow position: | |
| Alignm length: | 329 |
| Alignm identity: | 221 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 42, 24 |
| Conread position: | 7-632 |
| Cow position: | |
| Alignm length: | 639 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 150 |
| Conread position: | 11-269 |
| Cow position: | |
| Alignm length: | 259 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 11-326 |
| Cow position: | |
| Alignm length: | 321 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 145 |
| Conread position: | 11-491 |
| Cow position: | |
| Alignm length: | 490 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 130 |
| Conread position: | 11-525 |
| Cow position: | |
| Alignm length: | 526 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 143 |
| Conread position: | 11-627 |
| Cow position: | |
| Alignm length: | 637 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 142 |
| Conread position: | 11-631 |
| Cow position: | |
| Alignm length: | 631 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 61 |
| Conread position: | 11-634 |
| Cow position: | |
| Alignm length: | 636 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 143 |
| Conread position: | 11-893 |
| Cow position: | |
| Alignm length: | 904 |
| Alignm identity: | 632 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 122 |
| Conread position: | 12-314 |
| Cow position: | |
| Alignm length: | 327 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 42, 133 |
| Conread position: | 12-535 |
| Cow position: | |
| Alignm length: | 533 |
| Alignm identity: | 336 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 33, 86 |
| Conread position: | 13-269 |
| Cow position: | |
| Alignm length: | 266 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 40, 152 |
| Conread position: | 13-330 |
| Cow position: | |
| Alignm length: | 322 |
| Alignm identity: | 211 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 43, 130 |
| Conread position: | 13-330 |
| Cow position: | |
| Alignm length: | 322 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 36, 133 |
| Conread position: | 14-493 |
| Cow position: | |
| Alignm length: | 487 |
| Alignm identity: | 310 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 60, 47 |
| Conread position: | 16-162 |
| Cow position: | |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 36, 130 |
| Conread position: | 16-634 |
| Cow position: | |
| Alignm length: | 633 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 137 |
| Conread position: | 23-896 |
| Cow position: | |
| Alignm length: | 911 |
| Alignm identity: | 582 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 134 |
| Conread position: | 55-264 |
| Cow position: | |
| Alignm length: | 210 |
| Alignm identity: | 162 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 55-749 |
| Cow position: | |
| Alignm length: | 717 |
| Alignm identity: | 508 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 89 |
| Conread position: | 104-672 |
| Cow position: | |
| Alignm length: | 611 |
| Alignm identity: | 394 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 176, 46 |
| Conread position: | 118-345 |
| Cow position: | |
| Alignm length: | 231 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 178, 33 |
| Conread position: | 130-826 |
| Cow position: | |
| Alignm length: | 732 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 20 |
| Conread position: | 139-637 |
| Cow position: | |
| Alignm length: | 507 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 331, 11 |
| Conread position: | 144-466 |
| Cow position: | |
| Alignm length: | 325 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 150 |
| Conread position: | 144-911 |
| Cow position: | |
| Alignm length: | 803 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 27 |
| Conread position: | 153-1146 |
| Cow position: | |
| Alignm length: | 1013 |
| Alignm identity: | 703 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 14 |
| Conread position: | 155-539 |
| Cow position: | |
| Alignm length: | 394 |
| Alignm identity: | 260 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 146, 138 |
| Conread position: | 217-623 |
| Cow position: | |
| Alignm length: | 414 |
| Alignm identity: | 281 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 61, 77 |
| Conread position: | 245-634 |
| Cow position: | |
| Alignm length: | 404 |
| Alignm identity: | 271 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 203, 104 |
| Conread position: | 313-633 |
| Cow position: | |
| Alignm length: | 326 |
| Alignm identity: | 227 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 143, 131 |
| Conread position: | 327-542 |
| Cow position: | |
| Alignm length: | 221 |
| Alignm identity: | 153 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 139, 199 |
| Conread position: | 330-758 |
| Cow position: | |
| Alignm length: | 456 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 86 |
| Conread position: | 331-731 |
| Cow position: | |
| Alignm length: | 402 |
| Alignm identity: | 263 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 288, 41 |
| Conread position: | 358-534 |
| Cow position: | |
| Alignm length: | 179 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 98, 86 |
| Conread position: | 428-1098 |
| Cow position: | |
| Alignm length: | 684 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 64 |
| Conread position: | 485-911 |
| Cow position: | |
| Alignm length: | 438 |
| Alignm identity: | 263 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 83, 144 |
| Conread position: | 508-893 |
| Cow position: | |
| Alignm length: | 394 |
| Alignm identity: | 264 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 33, 189 |
| Conread position: | 520-1146 |
| Cow position: | |
| Alignm length: | 663 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 400 |
| Conread position: | 534-1079 |
| Cow position: | |
| Alignm length: | 572 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 252 |
| Conread position: | 542-1118 |
| Cow position: | |
| Alignm length: | 593 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 370 |
| Conread position: | 590-1146 |
| Cow position: | |
| Alignm length: | 559 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 55 |
| Conread position: | 607-1146 |
| Cow position: | |
| Alignm length: | 548 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 52 |
| Conread position: | 717-1134 |
| Cow position: | |
| Alignm length: | 427 |
| Alignm identity: | 268 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 289, 48 |
| Conread position: | 731-1146 |
| Cow position: | |
| Alignm length: | 424 |
| Alignm identity: | 267 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 34, 43 |
| Conread position: | 783-1098 |
| Cow position: | |
| Alignm length: | 321 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 88 |
| Conread position: | 783-1146 |
| Cow position: | |
| Alignm length: | 382 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 101 |
| Conread position: | 789-1146 |
| Cow position: | |
| Alignm length: | 375 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 115 |
| Conread position: | 814-1151 |
| Cow position: | |
| Alignm length: | 347 |
| Alignm identity: | 229 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 80, 97 |
| Conread position: | 912-1150 |
| Cow position: | |
| Alignm length: | 246 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 97, 156 |
Show alignments to all cow chromosomes.