Cow genome map

Conread name: Ss1.1-Tra1-TCH01E040098.5

Conread position: 1-251
Cow position: chr21:30561829-30561577 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 182
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 52, 153

Conread position: 1-264
Cow position: chr21:34293045-34292781 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 152

Conread position: 1-265
Cow position: chr21:36714660-36714403 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 183
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 22, 84

Conread position: 1-269
Cow position: chr21:2788964-2789221 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 206
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 51, 109

Conread position: 1-270
Cow position: chr21:3615319-3615051 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 99

Conread position: 1-291
Cow position: chr21:3426512-3426221 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 232

Conread position: 1-366
Cow position: chr21:39425090-39424729 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 104

Conread position: 1-368
Cow position: chr21:11453629-11453994 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 94

Conread position: 1-370
Cow position: chr21:47948136-47947770 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 255
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 51, 140

Conread position: 1-440
Cow position: chr21:33755335-33754890 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 308
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 51, 130

Conread position: 1-468
Cow position: chr21:2501961-2501507 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 54

Conread position: 1-530
Cow position: chr21:1292150-1292677 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 61

Conread position: 1-533
Cow position: chr21:20744724-20745226 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 360
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 51, 30

Conread position: 1-624
Cow position: chr21:7267514-7268130 (view UCSC Genome Browser custom track)
Alignm length: 633
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 467, 69

Conread position: 1-629
Cow position: chr21:13123972-13124568 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 409, 149

Conread position: 1-631
Cow position: chr21:2716654-2717256 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 110

Conread position: 1-631
Cow position: chr21:35596395-35595791 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 83

Conread position: 1-632
Cow position: chr21:34259192-34259803 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 52

Conread position: 1-749
Cow position: chr21:4090678-4089892 (view UCSC Genome Browser custom track)
Alignm length: 788
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 172

Conread position: 1-883
Cow position: chr21:4589963-4590815 (view UCSC Genome Browser custom track)
Alignm length: 897
Alignm identity: 609
Alignm E-value: 0
Alignm gaps (pig, cow): 458, 54

Conread position: 1-889
Cow position: chr21:2510679-2509772 (view UCSC Genome Browser custom track)
Alignm length: 927
Alignm identity: 608
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 143

Conread position: 1-889
Cow position: chr21:17572948-17572034 (view UCSC Genome Browser custom track)
Alignm length: 926
Alignm identity: 589
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 96

Conread position: 1-889
Cow position: chr21:26638436-26639350 (view UCSC Genome Browser custom track)
Alignm length: 928
Alignm identity: 594
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 153

Conread position: 1-889
Cow position: chr21:27708789-27707866 (view UCSC Genome Browser custom track)
Alignm length: 928
Alignm identity: 595
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 153

Conread position: 1-889
Cow position: chr21:28529517-28530437 (view UCSC Genome Browser custom track)
Alignm length: 930
Alignm identity: 605
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 152

Conread position: 1-911
Cow position: chr21:2476483-2477426 (view UCSC Genome Browser custom track)
Alignm length: 955
Alignm identity: 597
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 146

Conread position: 1-911
Cow position: chr21:12055973-12056898 (view UCSC Genome Browser custom track)
Alignm length: 935
Alignm identity: 604
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 150

Conread position: 1-911
Cow position: chr21:26818994-26819928 (view UCSC Genome Browser custom track)
Alignm length: 945
Alignm identity: 605
Alignm E-value: 0
Alignm gaps (pig, cow): 290, 66

Conread position: 1-911
Cow position: chr21:37044940-37044007 (view UCSC Genome Browser custom track)
Alignm length: 949
Alignm identity: 585
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 136

Conread position: 1-911
Cow position: chr21:46915614-46914674 (view UCSC Genome Browser custom track)
Alignm length: 951
Alignm identity: 592
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 167

Conread position: 2-158
Cow position: chr21:27775-27623 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 119
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 73, 0

Conread position: 2-312
Cow position: chr21:30599894-30600199 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 0

Conread position: 2-535
Cow position: chr21:359043-358520 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 153

Conread position: 2-594
Cow position: chr21:33251418-33250830 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 152

Conread position: 2-629
Cow position: chr21:47939507-47938893 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 154

Conread position: 2-632
Cow position: chr21:2530100-2530705 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 155

Conread position: 2-634
Cow position: chr21:145945-145329 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 77

Conread position: 2-634
Cow position: chr21:2883722-2884342 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 446, 48

Conread position: 2-634
Cow position: chr21:10566700-10566070 (view UCSC Genome Browser custom track)
Alignm length: 650
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 38

Conread position: 2-634
Cow position: chr21:31559628-31560252 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 146

Conread position: 2-634
Cow position: chr21:40271794-40272416 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 134

Conread position: 2-888
Cow position: chr21:11505613-11504694 (view UCSC Genome Browser custom track)
Alignm length: 924
Alignm identity: 607
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 153

Conread position: 3-307
Cow position: chr21:21031761-21031457 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 199
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 59, 88

Conread position: 7-271
Cow position: chr21:25992605-25992863 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 182
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 9, 30

Conread position: 7-329
Cow position: chr21:34054894-34055217 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 221
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 42, 24

Conread position: 7-632
Cow position: chr21:4222666-4223265 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 150

Conread position: 11-269
Cow position: chr21:9891620-9891370 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 0

Conread position: 11-326
Cow position: chr21:23860800-23860482 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 145

Conread position: 11-491
Cow position: chr21:2769444-2769915 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 130

Conread position: 11-525
Cow position: chr21:10850097-10849586 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 143

Conread position: 11-627
Cow position: chr21:3778784-3778172 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 142

Conread position: 11-631
Cow position: chr21:4076862-4076272 (view UCSC Genome Browser custom track)
Alignm length: 631
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 61

Conread position: 11-634
Cow position: chr21:48116125-48115506 (view UCSC Genome Browser custom track)
Alignm length: 636
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 143

Conread position: 11-893
Cow position: chr21:2416253-2415366 (view UCSC Genome Browser custom track)
Alignm length: 904
Alignm identity: 632
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 122

Conread position: 12-314
Cow position: chr21:21947785-21948108 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 221
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 42, 133

Conread position: 12-535
Cow position: chr21:216325-215812 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 336
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 33, 86

Conread position: 13-269
Cow position: chr21:6699541-6699804 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 176
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 40, 152

Conread position: 13-330
Cow position: chr21:4083664-4083350 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 211
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 43, 130

Conread position: 13-330
Cow position: chr21:21517218-21516908 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 217
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 36, 133

Conread position: 14-493
Cow position: chr21:445139-444677 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 310
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 60, 47

Conread position: 16-162
Cow position: chr21:2541403-2541552 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 112
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 36, 130

Conread position: 16-634
Cow position: chr21:1191054-1190439 (view UCSC Genome Browser custom track)
Alignm length: 633
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 137

Conread position: 23-896
Cow position: chr21:5016023-5016928 (view UCSC Genome Browser custom track)
Alignm length: 911
Alignm identity: 582
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 134

Conread position: 55-264
Cow position: chr21:2674668-2674875 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 162
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 95, 0

Conread position: 55-749
Cow position: chr21:4183508-4182822 (view UCSC Genome Browser custom track)
Alignm length: 717
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 89

Conread position: 104-672
Cow position: chr21:39580642-39580034 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 394
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 176, 46

Conread position: 118-345
Cow position: chr21:23811816-23811593 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 168
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 178, 33

Conread position: 130-826
Cow position: chr21:19610010-19609282 (view UCSC Genome Browser custom track)
Alignm length: 732
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 20

Conread position: 139-637
Cow position: chr21:29086378-29085906 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 331, 11

Conread position: 144-466
Cow position: chr21:41953065-41952751 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 150

Conread position: 144-911
Cow position: chr21:2454600-2453803 (view UCSC Genome Browser custom track)
Alignm length: 803
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 27

Conread position: 153-1146
Cow position: chr21:2541998-2542977 (view UCSC Genome Browser custom track)
Alignm length: 1013
Alignm identity: 703
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 14

Conread position: 155-539
Cow position: chr21:35089574-35089190 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 260
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 146, 138

Conread position: 217-623
Cow position: chr21:4455900-4455505 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 281
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 61, 77

Conread position: 245-634
Cow position: chr21:30561050-30560661 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 271
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 203, 104

Conread position: 313-633
Cow position: chr21:34292533-34292212 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 227
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 143, 131

Conread position: 327-542
Cow position: chr21:18820393-18820611 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 153
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 139, 199

Conread position: 330-758
Cow position: chr21:23809477-23809025 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 86

Conread position: 331-731
Cow position: chr21:24299140-24299514 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 263
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 288, 41

Conread position: 358-534
Cow position: chr21:30601738-30601913 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 128
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 98, 86

Conread position: 428-1098
Cow position: chr21:15585359-15586010 (view UCSC Genome Browser custom track)
Alignm length: 684
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 64

Conread position: 485-911
Cow position: chr21:26872751-26873184 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 263
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 83, 144

Conread position: 508-893
Cow position: chr21:2501243-2500858 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 264
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 33, 189

Conread position: 520-1146
Cow position: chr21:28873964-28873308 (view UCSC Genome Browser custom track)
Alignm length: 663
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 400

Conread position: 534-1079
Cow position: chr21:358373-357810 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 252

Conread position: 542-1118
Cow position: chr21:18820758-18821348 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 370

Conread position: 590-1146
Cow position: chr21:9891224-9890685 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 55

Conread position: 607-1146
Cow position: chr21:3983662-3983134 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 52

Conread position: 717-1134
Cow position: chr21:4076228-4075823 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 268
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 289, 48

Conread position: 731-1146
Cow position: chr21:18284716-18284310 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 267
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 34, 43

Conread position: 783-1098
Cow position: chr21:13162314-13162001 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 241, 88

Conread position: 783-1146
Cow position: chr21:13010649-13010275 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 101

Conread position: 789-1146
Cow position: chr21:23808952-23808579 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 115

Conread position: 814-1151
Cow position: chr21:27561075-27560735 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 229
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 80, 97

Conread position: 912-1150
Cow position: chr21:3357599-3357842 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 163
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 97, 156

Show alignments to all cow chromosomes.