Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01E040098.5 |
| Conread position: | 1-162 |
| Cow position: | |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 44, 113 |
| Conread position: | 1-227 |
| Cow position: | |
| Alignm length: | 232 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 49, 99 |
| Conread position: | 1-244 |
| Cow position: | |
| Alignm length: | 244 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 1-270 |
| Cow position: | |
| Alignm length: | 274 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 145 |
| Conread position: | 1-271 |
| Cow position: | |
| Alignm length: | 272 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 101, 24 |
| Conread position: | 1-291 |
| Cow position: | |
| Alignm length: | 297 |
| Alignm identity: | 214 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 125, 51 |
| Conread position: | 1-308 |
| Cow position: | |
| Alignm length: | 312 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 145 |
| Conread position: | 1-329 |
| Cow position: | |
| Alignm length: | 337 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 129 |
| Conread position: | 1-437 |
| Cow position: | |
| Alignm length: | 443 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 82 |
| Conread position: | 1-464 |
| Cow position: | |
| Alignm length: | 468 |
| Alignm identity: | 298 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 181, 41 |
| Conread position: | 1-535 |
| Cow position: | |
| Alignm length: | 544 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 147 |
| Conread position: | 1-631 |
| Cow position: | |
| Alignm length: | 644 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 151 |
| Conread position: | 1-631 |
| Cow position: | |
| Alignm length: | 642 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 34 |
| Conread position: | 1-633 |
| Cow position: | |
| Alignm length: | 642 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 154 |
| Conread position: | 1-769 |
| Cow position: | |
| Alignm length: | 786 |
| Alignm identity: | 561 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 465, 70 |
| Conread position: | 1-874 |
| Cow position: | |
| Alignm length: | 913 |
| Alignm identity: | 632 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 133 |
| Conread position: | 1-884 |
| Cow position: | |
| Alignm length: | 919 |
| Alignm identity: | 572 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 292 |
| Conread position: | 1-889 |
| Cow position: | |
| Alignm length: | 907 |
| Alignm identity: | 565 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 153 |
| Conread position: | 1-889 |
| Cow position: | |
| Alignm length: | 928 |
| Alignm identity: | 598 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 154 |
| Conread position: | 1-889 |
| Cow position: | |
| Alignm length: | 924 |
| Alignm identity: | 599 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 55 |
| Conread position: | 1-889 |
| Cow position: | |
| Alignm length: | 929 |
| Alignm identity: | 593 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 99 |
| Conread position: | 1-889 |
| Cow position: | |
| Alignm length: | 924 |
| Alignm identity: | 579 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 290, 61 |
| Conread position: | 1-889 |
| Cow position: | |
| Alignm length: | 935 |
| Alignm identity: | 621 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 55 |
| Conread position: | 1-889 |
| Cow position: | |
| Alignm length: | 930 |
| Alignm identity: | 611 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 153 |
| Conread position: | 1-889 |
| Cow position: | |
| Alignm length: | 919 |
| Alignm identity: | 593 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 150 |
| Conread position: | 1-889 |
| Cow position: | |
| Alignm length: | 920 |
| Alignm identity: | 598 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 55 |
| Conread position: | 1-891 |
| Cow position: | |
| Alignm length: | 924 |
| Alignm identity: | 563 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 27 |
| Conread position: | 1-934 |
| Cow position: | |
| Alignm length: | 947 |
| Alignm identity: | 683 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 9 |
| Conread position: | 2-269 |
| Cow position: | |
| Alignm length: | 272 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 152 |
| Conread position: | 2-345 |
| Cow position: | |
| Alignm length: | 347 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 151 |
| Conread position: | 2-518 |
| Cow position: | |
| Alignm length: | 521 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 446, 148 |
| Conread position: | 2-525 |
| Cow position: | |
| Alignm length: | 533 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 150 |
| Conread position: | 2-551 |
| Cow position: | |
| Alignm length: | 559 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 152 |
| Conread position: | 2-580 |
| Cow position: | |
| Alignm length: | 591 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 152 |
| Conread position: | 2-615 |
| Cow position: | |
| Alignm length: | 631 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 152 |
| Conread position: | 2-634 |
| Cow position: | |
| Alignm length: | 652 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 145 |
| Conread position: | 2-634 |
| Cow position: | |
| Alignm length: | 649 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 110 |
| Conread position: | 2-634 |
| Cow position: | |
| Alignm length: | 652 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 144 |
| Conread position: | 2-877 |
| Cow position: | |
| Alignm length: | 919 |
| Alignm identity: | 592 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 148 |
| Conread position: | 2-888 |
| Cow position: | |
| Alignm length: | 924 |
| Alignm identity: | 594 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 54 |
| Conread position: | 5-267 |
| Cow position: | |
| Alignm length: | 267 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 10, 73 |
| Conread position: | 6-324 |
| Cow position: | |
| Alignm length: | 323 |
| Alignm identity: | 211 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 52, 89 |
| Conread position: | 7-911 |
| Cow position: | |
| Alignm length: | 945 |
| Alignm identity: | 610 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 148 |
| Conread position: | 7-1146 |
| Cow position: | |
| Alignm length: | 1155 |
| Alignm identity: | 810 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 147 |
| Conread position: | 11-264 |
| Cow position: | |
| Alignm length: | 259 |
| Alignm identity: | 190 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 41, 109 |
| Conread position: | 11-291 |
| Cow position: | |
| Alignm length: | 283 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 127 |
| Conread position: | 11-493 |
| Cow position: | |
| Alignm length: | 491 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 143 |
| Conread position: | 11-502 |
| Cow position: | |
| Alignm length: | 497 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 316, 44 |
| Conread position: | 11-505 |
| Cow position: | |
| Alignm length: | 504 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 143 |
| Conread position: | 11-521 |
| Cow position: | |
| Alignm length: | 517 |
| Alignm identity: | 330 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 35, 253 |
| Conread position: | 11-522 |
| Cow position: | |
| Alignm length: | 518 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 150 |
| Conread position: | 11-889 |
| Cow position: | |
| Alignm length: | 915 |
| Alignm identity: | 589 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 115 |
| Conread position: | 11-891 |
| Cow position: | |
| Alignm length: | 912 |
| Alignm identity: | 622 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 24 |
| Conread position: | 11-891 |
| Cow position: | |
| Alignm length: | 901 |
| Alignm identity: | 575 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 51 |
| Conread position: | 11-911 |
| Cow position: | |
| Alignm length: | 931 |
| Alignm identity: | 597 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 32 |
| Conread position: | 12-251 |
| Cow position: | |
| Alignm length: | 254 |
| Alignm identity: | 190 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 12-314 |
| Cow position: | |
| Alignm length: | 307 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 79 |
| Conread position: | 12-738 |
| Cow position: | |
| Alignm length: | 753 |
| Alignm identity: | 562 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 95 |
| Conread position: | 13-320 |
| Cow position: | |
| Alignm length: | 312 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 54, 71 |
| Conread position: | 13-376 |
| Cow position: | |
| Alignm length: | 370 |
| Alignm identity: | 261 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 39, 33 |
| Conread position: | 13-485 |
| Cow position: | |
| Alignm length: | 478 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 457, 54 |
| Conread position: | 13-489 |
| Cow position: | |
| Alignm length: | 483 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 390, 50 |
| Conread position: | 13-494 |
| Cow position: | |
| Alignm length: | 483 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 365, 15 |
| Conread position: | 22-299 |
| Cow position: | |
| Alignm length: | 278 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 23-889 |
| Cow position: | |
| Alignm length: | 907 |
| Alignm identity: | 584 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 131 |
| Conread position: | 24-414 |
| Cow position: | |
| Alignm length: | 395 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 115 |
| Conread position: | 24-565 |
| Cow position: | |
| Alignm length: | 551 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 130 |
| Conread position: | 26-1104 |
| Cow position: | |
| Alignm length: | 1091 |
| Alignm identity: | 778 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 541, 109 |
| Conread position: | 58-424 |
| Cow position: | |
| Alignm length: | 373 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 154 |
| Conread position: | 58-633 |
| Cow position: | |
| Alignm length: | 586 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 408, 92 |
| Conread position: | 61-719 |
| Cow position: | |
| Alignm length: | 671 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 442, 81 |
| Conread position: | 88-400 |
| Cow position: | |
| Alignm length: | 314 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 20 |
| Conread position: | 109-287 |
| Cow position: | |
| Alignm length: | 179 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 114-913 |
| Cow position: | |
| Alignm length: | 826 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 55 |
| Conread position: | 117-654 |
| Cow position: | |
| Alignm length: | 557 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 240, 33 |
| Conread position: | 138-631 |
| Cow position: | |
| Alignm length: | 508 |
| Alignm identity: | 346 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 19, 74 |
| Conread position: | 150-685 |
| Cow position: | |
| Alignm length: | 542 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 313, 151 |
| Conread position: | 176-496 |
| Cow position: | |
| Alignm length: | 325 |
| Alignm identity: | 227 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 272, 177 |
| Conread position: | 179-473 |
| Cow position: | |
| Alignm length: | 295 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 194-414 |
| Cow position: | |
| Alignm length: | 222 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 49, 133 |
| Conread position: | 198-347 |
| Cow position: | |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 254-634 |
| Cow position: | |
| Alignm length: | 390 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 194, 95 |
| Conread position: | 268-537 |
| Cow position: | |
| Alignm length: | 274 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 180, 63 |
| Conread position: | 313-536 |
| Cow position: | |
| Alignm length: | 225 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 143, 26 |
| Conread position: | 313-633 |
| Cow position: | |
| Alignm length: | 327 |
| Alignm identity: | 227 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 77, 86 |
| Conread position: | 320-891 |
| Cow position: | |
| Alignm length: | 584 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 245, 139 |
| Conread position: | 341-884 |
| Cow position: | |
| Alignm length: | 559 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 197 |
| Conread position: | 355-836 |
| Cow position: | |
| Alignm length: | 506 |
| Alignm identity: | 324 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 54, 291 |
| Conread position: | 359-1142 |
| Cow position: | |
| Alignm length: | 799 |
| Alignm identity: | 538 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 61 |
| Conread position: | 370-878 |
| Cow position: | |
| Alignm length: | 526 |
| Alignm identity: | 349 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 18, 81 |
| Conread position: | 375-1145 |
| Cow position: | |
| Alignm length: | 811 |
| Alignm identity: | 551 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 27 |
| Conread position: | 396-1140 |
| Cow position: | |
| Alignm length: | 767 |
| Alignm identity: | 508 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 152 |
| Conread position: | 422-1146 |
| Cow position: | |
| Alignm length: | 740 |
| Alignm identity: | 510 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 61 |
| Conread position: | 484-1052 |
| Cow position: | |
| Alignm length: | 585 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 197 |
| Conread position: | 486-1099 |
| Cow position: | |
| Alignm length: | 634 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 21 |
| Conread position: | 584-997 |
| Cow position: | |
| Alignm length: | 417 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 267 |
| Conread position: | 673-1146 |
| Cow position: | |
| Alignm length: | 500 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 60 |
| Conread position: | 691-1149 |
| Cow position: | |
| Alignm length: | 470 |
| Alignm identity: | 292 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 18, 141 |
| Conread position: | 732-1111 |
| Cow position: | |
| Alignm length: | 397 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 152 |
| Conread position: | 739-1149 |
| Cow position: | |
| Alignm length: | 423 |
| Alignm identity: | 271 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 16, 89 |
| Conread position: | 747-1140 |
| Cow position: | |
| Alignm length: | 406 |
| Alignm identity: | 276 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 8, 20 |
| Conread position: | 786-1139 |
| Cow position: | |
| Alignm length: | 358 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 116 |
| Conread position: | 902-1147 |
| Cow position: | |
| Alignm length: | 254 |
| Alignm identity: | 182 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 102, 49 |
Show alignments to all cow chromosomes.