Cow genome map

Conread name: Ss1.1-Tra1-TCH01E040098.5

Conread position: 1-162
Cow position: chr22:34598529-34598367 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 126
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 44, 113

Conread position: 1-227
Cow position: chr22:4065495-4065267 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 169
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 49, 99

Conread position: 1-244
Cow position: chr22:32485482-32485718 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 0

Conread position: 1-270
Cow position: chr22:117961-118232 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 145

Conread position: 1-271
Cow position: chr22:36267224-36266967 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 186
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 101, 24

Conread position: 1-291
Cow position: chr22:46853196-46852905 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 214
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 125, 51

Conread position: 1-308
Cow position: chr22:44353093-44353402 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 145

Conread position: 1-329
Cow position: chr22:46635843-46636173 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 129

Conread position: 1-437
Cow position: chr22:37131504-37131085 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 82

Conread position: 1-464
Cow position: chr22:302136-302583 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 298
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 181, 41

Conread position: 1-535
Cow position: chr22:7277378-7276851 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 147

Conread position: 1-631
Cow position: chr22:5672591-5671989 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 151

Conread position: 1-631
Cow position: chr22:39882322-39882921 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 34

Conread position: 1-633
Cow position: chr22:1319251-1318657 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 154

Conread position: 1-769
Cow position: chr22:3306878-3307639 (view UCSC Genome Browser custom track)
Alignm length: 786
Alignm identity: 561
Alignm E-value: 0
Alignm gaps (pig, cow): 465, 70

Conread position: 1-874
Cow position: chr22:8136342-8137217 (view UCSC Genome Browser custom track)
Alignm length: 913
Alignm identity: 632
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 133

Conread position: 1-884
Cow position: chr22:37265308-37264394 (view UCSC Genome Browser custom track)
Alignm length: 919
Alignm identity: 572
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 292

Conread position: 1-889
Cow position: chr22:1878646-1877769 (view UCSC Genome Browser custom track)
Alignm length: 907
Alignm identity: 565
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 153

Conread position: 1-889
Cow position: chr22:3278498-3279415 (view UCSC Genome Browser custom track)
Alignm length: 928
Alignm identity: 598
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 154

Conread position: 1-889
Cow position: chr22:5233451-5234365 (view UCSC Genome Browser custom track)
Alignm length: 924
Alignm identity: 599
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 55

Conread position: 1-889
Cow position: chr22:6985109-6984186 (view UCSC Genome Browser custom track)
Alignm length: 929
Alignm identity: 593
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 99

Conread position: 1-889
Cow position: chr22:10546499-10545582 (view UCSC Genome Browser custom track)
Alignm length: 924
Alignm identity: 579
Alignm E-value: 0
Alignm gaps (pig, cow): 290, 61

Conread position: 1-889
Cow position: chr22:10910003-10910927 (view UCSC Genome Browser custom track)
Alignm length: 935
Alignm identity: 621
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 55

Conread position: 1-889
Cow position: chr22:35672501-35673424 (view UCSC Genome Browser custom track)
Alignm length: 930
Alignm identity: 611
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 153

Conread position: 1-889
Cow position: chr22:44369766-44370667 (view UCSC Genome Browser custom track)
Alignm length: 919
Alignm identity: 593
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 150

Conread position: 1-889
Cow position: chr22:44489741-44488827 (view UCSC Genome Browser custom track)
Alignm length: 920
Alignm identity: 598
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 55

Conread position: 1-891
Cow position: chr22:44457170-44456272 (view UCSC Genome Browser custom track)
Alignm length: 924
Alignm identity: 563
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 27

Conread position: 1-934
Cow position: chr22:1293641-1294558 (view UCSC Genome Browser custom track)
Alignm length: 947
Alignm identity: 683
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 9

Conread position: 2-269
Cow position: chr22:36861677-36861946 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 152

Conread position: 2-345
Cow position: chr22:31335180-31335522 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 151

Conread position: 2-518
Cow position: chr22:31313194-31312689 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 446, 148

Conread position: 2-525
Cow position: chr22:39469666-39470183 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 150

Conread position: 2-551
Cow position: chr22:34168185-34167630 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 152

Conread position: 2-580
Cow position: chr22:42991025-42990455 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 152

Conread position: 2-615
Cow position: chr22:44933833-44933220 (view UCSC Genome Browser custom track)
Alignm length: 631
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 152

Conread position: 2-634
Cow position: chr22:17328886-17329518 (view UCSC Genome Browser custom track)
Alignm length: 652
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 145

Conread position: 2-634
Cow position: chr22:19143846-19144476 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 110

Conread position: 2-634
Cow position: chr22:21589186-21588559 (view UCSC Genome Browser custom track)
Alignm length: 652
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 144

Conread position: 2-877
Cow position: chr22:27309920-27310833 (view UCSC Genome Browser custom track)
Alignm length: 919
Alignm identity: 592
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 148

Conread position: 2-888
Cow position: chr22:18475912-18476828 (view UCSC Genome Browser custom track)
Alignm length: 924
Alignm identity: 594
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 54

Conread position: 5-267
Cow position: chr22:10076900-10077160 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 193
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 10, 73

Conread position: 6-324
Cow position: chr22:293313-293623 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 211
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 52, 89

Conread position: 7-911
Cow position: chr22:24949679-24948740 (view UCSC Genome Browser custom track)
Alignm length: 945
Alignm identity: 610
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 148

Conread position: 7-1146
Cow position: chr22:1285083-1286208 (view UCSC Genome Browser custom track)
Alignm length: 1155
Alignm identity: 810
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 147

Conread position: 11-264
Cow position: chr22:18816537-18816792 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 190
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 41, 109

Conread position: 11-291
Cow position: chr22:37067070-37067346 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 127

Conread position: 11-493
Cow position: chr22:560855-561330 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 143

Conread position: 11-502
Cow position: chr22:13772626-13772142 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 316, 44

Conread position: 11-505
Cow position: chr22:46585467-46585963 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 143

Conread position: 11-521
Cow position: chr22:33351013-33350518 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 330
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 35, 253

Conread position: 11-522
Cow position: chr22:1047221-1046725 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 150

Conread position: 11-889
Cow position: chr22:693476-692576 (view UCSC Genome Browser custom track)
Alignm length: 915
Alignm identity: 589
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 115

Conread position: 11-891
Cow position: chr22:327312-328213 (view UCSC Genome Browser custom track)
Alignm length: 912
Alignm identity: 622
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 24

Conread position: 11-891
Cow position: chr22:5933140-5934022 (view UCSC Genome Browser custom track)
Alignm length: 901
Alignm identity: 575
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 51

Conread position: 11-911
Cow position: chr22:16200330-16199410 (view UCSC Genome Browser custom track)
Alignm length: 931
Alignm identity: 597
Alignm E-value: 0
Alignm gaps (pig, cow): 278, 32

Conread position: 12-251
Cow position: chr22:158059-158312 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 190
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 40, 0

Conread position: 12-314
Cow position: chr22:44395624-44395322 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 79

Conread position: 12-738
Cow position: chr22:1321455-1320734 (view UCSC Genome Browser custom track)
Alignm length: 753
Alignm identity: 562
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 95

Conread position: 13-320
Cow position: chr22:309556-309258 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 211
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 54, 71

Conread position: 13-376
Cow position: chr22:11030802-11030466 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 261
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 39, 33

Conread position: 13-485
Cow position: chr22:36736605-36736157 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 457, 54

Conread position: 13-489
Cow position: chr22:37073334-37073785 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 390, 50

Conread position: 13-494
Cow position: chr22:15851176-15850704 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 365, 15

Conread position: 22-299
Cow position: chr22:41419855-41420130 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 0

Conread position: 23-889
Cow position: chr22:5307950-5307049 (view UCSC Genome Browser custom track)
Alignm length: 907
Alignm identity: 584
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 131

Conread position: 24-414
Cow position: chr22:6503839-6504208 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 115

Conread position: 24-565
Cow position: chr22:36534132-36534658 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 130

Conread position: 26-1104
Cow position: chr22:45880309-45881334 (view UCSC Genome Browser custom track)
Alignm length: 1091
Alignm identity: 778
Alignm E-value: 0
Alignm gaps (pig, cow): 541, 109

Conread position: 58-424
Cow position: chr22:1270705-1271066 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 154

Conread position: 58-633
Cow position: chr22:42771341-42770797 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 408, 92

Conread position: 61-719
Cow position: chr22:526119-526768 (view UCSC Genome Browser custom track)
Alignm length: 671
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 442, 81

Conread position: 88-400
Cow position: chr22:12732308-12732602 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 20

Conread position: 109-287
Cow position: chr22:18930320-18930144 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 129
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 41, 0

Conread position: 114-913
Cow position: chr22:6020565-6019744 (view UCSC Genome Browser custom track)
Alignm length: 826
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 55

Conread position: 117-654
Cow position: chr22:36180879-36180331 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 240, 33

Conread position: 138-631
Cow position: chr22:40380917-40380446 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 346
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 19, 74

Conread position: 150-685
Cow position: chr22:44609343-44608819 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 313, 151

Conread position: 176-496
Cow position: chr22:27386709-27387025 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 227
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 272, 177

Conread position: 179-473
Cow position: chr22:44474988-44474707 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 198
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 88, 0

Conread position: 194-414
Cow position: chr22:48004327-48004109 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 161
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 49, 133

Conread position: 198-347
Cow position: chr22:15314701-15314850 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 115
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 254-634
Cow position: chr22:36862111-36862488 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 254
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 194, 95

Conread position: 268-537
Cow position: chr22:6332299-6332038 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 186
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 180, 63

Conread position: 313-536
Cow position: chr22:36273057-36272837 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 154
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 143, 26

Conread position: 313-633
Cow position: chr22:10077168-10077482 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 227
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 77, 86

Conread position: 320-891
Cow position: chr22:46636443-46637001 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 245, 139

Conread position: 341-884
Cow position: chr22:44353622-44354164 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 197

Conread position: 355-836
Cow position: chr22:2563522-2564021 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 324
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 54, 291

Conread position: 359-1142
Cow position: chr22:11030154-11029393 (view UCSC Genome Browser custom track)
Alignm length: 799
Alignm identity: 538
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 61

Conread position: 370-878
Cow position: chr22:6087576-6088070 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 349
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 18, 81

Conread position: 375-1145
Cow position: chr22:41420274-41421062 (view UCSC Genome Browser custom track)
Alignm length: 811
Alignm identity: 551
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 27

Conread position: 396-1140
Cow position: chr22:6504379-6505129 (view UCSC Genome Browser custom track)
Alignm length: 767
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 152

Conread position: 422-1146
Cow position: chr22:9464909-9464209 (view UCSC Genome Browser custom track)
Alignm length: 740
Alignm identity: 510
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 61

Conread position: 484-1052
Cow position: chr22:8880625-8880053 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 197

Conread position: 486-1099
Cow position: chr22:1271086-1271706 (view UCSC Genome Browser custom track)
Alignm length: 634
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 21

Conread position: 584-997
Cow position: chr22:17073131-17072718 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 267

Conread position: 673-1146
Cow position: chr22:34695726-34695230 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 60

Conread position: 691-1149
Cow position: chr22:118573-119025 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 292
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 18, 141

Conread position: 732-1111
Cow position: chr22:8741151-8741544 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 152

Conread position: 739-1149
Cow position: chr22:40380403-40380003 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 271
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 16, 89

Conread position: 747-1140
Cow position: chr22:1313468-1313868 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 276
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 8, 20

Conread position: 786-1139
Cow position: chr22:1317867-1317513 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 236, 116

Conread position: 902-1147
Cow position: chr22:8137224-8137476 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 182
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 102, 49

Show alignments to all cow chromosomes.