Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01E040098.5 |
| Conread position: | 1-157 |
| Cow position: | chr23:16616014-16616168 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 142, 0 |
| Conread position: | 1-270 |
| Cow position: | chr23:2765524-2765784 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 203 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 51, 132 |
| Conread position: | 1-270 |
| Cow position: | chr23:5779230-5779502 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 145 |
| Conread position: | 1-291 |
| Cow position: | chr23:3380397-3380682 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 1-299 |
| Cow position: | chr23:16481499-16481792 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 135 |
| Conread position: | 1-308 |
| Cow position: | chr23:31446669-31446361 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 49, 99 |
| Conread position: | 1-326 |
| Cow position: | chr23:7273509-7273191 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 14 |
| Conread position: | 1-366 |
| Cow position: | chr23:22875780-22876137 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 40 |
| Conread position: | 1-474 |
| Cow position: | chr23:4276809-4276361 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 80 |
| Conread position: | 1-492 |
| Cow position: | chr23:4359684-4359178 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 153 |
| Conread position: | 1-548 |
| Cow position: | chr23:2340258-2339721 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 15 |
| Conread position: | 1-630 |
| Cow position: | chr23:988786-989395 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 153 |
| Conread position: | 1-631 |
| Cow position: | chr23:31595323-31595939 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 145 |
| Conread position: | 1-632 |
| Cow position: | chr23:5874920-5875521 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 150 |
| Conread position: | 1-634 |
| Cow position: | chr23:19489392-19488753 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 150 |
| Conread position: | 1-738 |
| Cow position: | chr23:28217145-28216378 (view UCSC Genome Browser custom track) |
| Alignm length: | 774 |
| Alignm identity: | 506 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 153 |
| Conread position: | 1-889 |
| Cow position: | chr23:20302069-20301146 (view UCSC Genome Browser custom track) |
| Alignm length: | 932 |
| Alignm identity: | 604 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 156 |
| Conread position: | 2-186 |
| Cow position: | chr23:2313384-2313570 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 48, 145 |
| Conread position: | 2-212 |
| Cow position: | chr23:2725710-2725504 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 55, 81 |
| Conread position: | 2-255 |
| Cow position: | chr23:30636448-30636703 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 191 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 38, 152 |
| Conread position: | 2-502 |
| Cow position: | chr23:15220044-15220533 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 150 |
| Conread position: | 2-535 |
| Cow position: | chr23:16616995-16617506 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 144 |
| Conread position: | 2-535 |
| Cow position: | chr23:19332545-19333078 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 242 |
| Conread position: | 2-580 |
| Cow position: | chr23:1141410-1140838 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 87 |
| Conread position: | 2-600 |
| Cow position: | chr23:11778339-11777736 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 145 |
| Conread position: | 2-614 |
| Cow position: | chr23:4815926-4815324 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 102 |
| Conread position: | 2-634 |
| Cow position: | chr23:2027265-2027896 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 279 |
| Conread position: | 2-634 |
| Cow position: | chr23:15176928-15176277 (view UCSC Genome Browser custom track) |
| Alignm length: | 673 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 310 |
| Conread position: | 2-634 |
| Cow position: | chr23:36031518-36032149 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 149 |
| Conread position: | 2-889 |
| Cow position: | chr23:19950730-19951649 (view UCSC Genome Browser custom track) |
| Alignm length: | 926 |
| Alignm identity: | 603 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 155 |
| Conread position: | 3-682 |
| Cow position: | chr23:2795709-2796382 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 151 |
| Conread position: | 4-518 |
| Cow position: | chr23:4509952-4509442 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 428, 47 |
| Conread position: | 11-221 |
| Cow position: | chr23:8980648-8980856 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 11-266 |
| Cow position: | chr23:2574409-2574153 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 13 |
| Conread position: | 11-279 |
| Cow position: | chr23:1330445-1330711 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 11-285 |
| Cow position: | chr23:967501-967779 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 66 |
| Conread position: | 11-291 |
| Cow position: | chr23:19017545-19017272 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 11-455 |
| Cow position: | chr23:2716196-2715749 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 143 |
| Conread position: | 11-493 |
| Cow position: | chr23:3881854-3882323 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 433, 139 |
| Conread position: | 11-504 |
| Cow position: | chr23:4640780-4641262 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 143 |
| Conread position: | 11-522 |
| Cow position: | chr23:19449868-19449366 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 333 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 138, 35 |
| Conread position: | 11-592 |
| Cow position: | chr23:27399348-27398773 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 143 |
| Conread position: | 11-654 |
| Cow position: | chr23:22147413-22148077 (view UCSC Genome Browser custom track) |
| Alignm length: | 672 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 144 |
| Conread position: | 11-682 |
| Cow position: | chr23:15525455-15524797 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 140 |
| Conread position: | 12-1146 |
| Cow position: | chr23:1025216-1026318 (view UCSC Genome Browser custom track) |
| Alignm length: | 1156 |
| Alignm identity: | 800 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 61 |
| Conread position: | 13-526 |
| Cow position: | chr23:34175026-34174534 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 335 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 51, 155 |
| Conread position: | 16-580 |
| Cow position: | chr23:28913252-28912685 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 138 |
| Conread position: | 24-889 |
| Cow position: | chr23:4434296-4433412 (view UCSC Genome Browser custom track) |
| Alignm length: | 900 |
| Alignm identity: | 609 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 130 |
| Conread position: | 55-687 |
| Cow position: | chr23:3013430-3012830 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 5 |
| Conread position: | 61-890 |
| Cow position: | chr23:14974978-14975830 (view UCSC Genome Browser custom track) |
| Alignm length: | 867 |
| Alignm identity: | 577 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 89 |
| Conread position: | 63-264 |
| Cow position: | chr23:14966184-14966383 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 160 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 72-230 |
| Cow position: | chr23:6469495-6469651 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 114-503 |
| Cow position: | chr23:2757239-2756863 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 36 |
| Conread position: | 115-633 |
| Cow position: | chr23:2524713-2525216 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 349 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 9, 28 |
| Conread position: | 134-633 |
| Cow position: | chr23:2045748-2045264 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 74 |
| Conread position: | 160-468 |
| Cow position: | chr23:3490799-3491100 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 215, 19 |
| Conread position: | 253-891 |
| Cow position: | chr23:2573891-2573265 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 34 |
| Conread position: | 256-829 |
| Cow position: | chr23:31707580-31706994 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 359 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 211, 548 |
| Conread position: | 266-469 |
| Cow position: | chr23:8981211-8981411 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 316-585 |
| Cow position: | chr23:810676-810404 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 15 |
| Conread position: | 358-630 |
| Cow position: | chr23:5779891-5780159 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 198 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 206, 96 |
| Conread position: | 358-633 |
| Cow position: | chr23:7270090-7269810 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 110, 55 |
| Conread position: | 358-634 |
| Cow position: | chr23:969121-969405 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 107, 202 |
| Conread position: | 360-520 |
| Cow position: | chr23:22879658-22879822 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 384-889 |
| Cow position: | chr23:3375179-3375695 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 317 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 79, 53 |
| Conread position: | 536-847 |
| Cow position: | chr23:22880387-22880705 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 228 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 34, 25 |
| Conread position: | 649-1139 |
| Cow position: | chr23:1330710-1331204 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 118 |
| Conread position: | 696-1149 |
| Cow position: | chr23:31592359-31592806 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 303 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 59, 132 |
| Conread position: | 705-1148 |
| Cow position: | chr23:31595969-31596401 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 289 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 50, 105 |
| Conread position: | 757-1094 |
| Cow position: | chr23:10556763-10557105 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 145 |
| Conread position: | 902-1149 |
| Cow position: | chr23:5878130-5878381 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 104, 93 |
| Conread position: | 916-1141 |
| Cow position: | chr23:2525439-2525670 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 90, 153 |
| Conread position: | 922-1149 |
| Cow position: | chr23:7269608-7269372 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 956-1140 |
| Cow position: | chr23:10375393-10375585 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 50, 0 |
Show alignments to all cow chromosomes.