Cow genome map
Conread name: | Ss1.1-Tra1-TCH01E040098.5 |
Conread position: | 1-200 |
Cow position: | chr24:8030091-8029890 (view UCSC Genome Browser custom track) |
Alignm length: | 204 |
Alignm identity: | 151 |
Alignm E-value: | 2e-32 |
Alignm gaps (pig, cow): | 49, 146 |
Conread position: | 1-210 |
Cow position: | chr24:2636060-2635849 (view UCSC Genome Browser custom track) |
Alignm length: | 215 |
Alignm identity: | 157 |
Alignm E-value: | 1e-30 |
Alignm gaps (pig, cow): | 49, 99 |
Conread position: | 1-264 |
Cow position: | chr24:36560143-36560396 (view UCSC Genome Browser custom track) |
Alignm length: | 268 |
Alignm identity: | 200 |
Alignm E-value: | 1e-39 |
Alignm gaps (pig, cow): | 51, 104 |
Conread position: | 1-270 |
Cow position: | chr24:35838685-35838957 (view UCSC Genome Browser custom track) |
Alignm length: | 278 |
Alignm identity: | 216 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 218 |
Conread position: | 1-271 |
Cow position: | chr24:12485377-12485649 (view UCSC Genome Browser custom track) |
Alignm length: | 275 |
Alignm identity: | 195 |
Alignm E-value: | 9.99995e-41 |
Alignm gaps (pig, cow): | 49, 146 |
Conread position: | 1-291 |
Cow position: | chr24:14885300-14885597 (view UCSC Genome Browser custom track) |
Alignm length: | 303 |
Alignm identity: | 206 |
Alignm E-value: | 4e-29 |
Alignm gaps (pig, cow): | 83, 65 |
Conread position: | 1-295 |
Cow position: | chr24:13188125-13187837 (view UCSC Genome Browser custom track) |
Alignm length: | 298 |
Alignm identity: | 208 |
Alignm E-value: | 3e-38 |
Alignm gaps (pig, cow): | 63, 150 |
Conread position: | 1-327 |
Cow position: | chr24:12208079-12207757 (view UCSC Genome Browser custom track) |
Alignm length: | 331 |
Alignm identity: | 233 |
Alignm E-value: | 6.02558e-44 |
Alignm gaps (pig, cow): | 51, 73 |
Conread position: | 1-363 |
Cow position: | chr24:6083957-6083593 (view UCSC Genome Browser custom track) |
Alignm length: | 367 |
Alignm identity: | 260 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 52, 153 |
Conread position: | 1-370 |
Cow position: | chr24:7061042-7060681 (view UCSC Genome Browser custom track) |
Alignm length: | 374 |
Alignm identity: | 261 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 146 |
Conread position: | 1-370 |
Cow position: | chr24:44017486-44017115 (view UCSC Genome Browser custom track) |
Alignm length: | 376 |
Alignm identity: | 274 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 63, 99 |
Conread position: | 1-376 |
Cow position: | chr24:12114099-12114468 (view UCSC Genome Browser custom track) |
Alignm length: | 379 |
Alignm identity: | 259 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 63, 23 |
Conread position: | 1-418 |
Cow position: | chr24:22793114-22792700 (view UCSC Genome Browser custom track) |
Alignm length: | 420 |
Alignm identity: | 292 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 60, 143 |
Conread position: | 1-435 |
Cow position: | chr24:33933306-33932866 (view UCSC Genome Browser custom track) |
Alignm length: | 443 |
Alignm identity: | 311 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 55, 151 |
Conread position: | 1-520 |
Cow position: | chr24:12161819-12161306 (view UCSC Genome Browser custom track) |
Alignm length: | 535 |
Alignm identity: | 372 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 102 |
Conread position: | 1-534 |
Cow position: | chr24:6057614-6057099 (view UCSC Genome Browser custom track) |
Alignm length: | 545 |
Alignm identity: | 362 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 41, 129 |
Conread position: | 1-534 |
Cow position: | chr24:6352136-6351611 (view UCSC Genome Browser custom track) |
Alignm length: | 546 |
Alignm identity: | 366 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 48, 297 |
Conread position: | 1-535 |
Cow position: | chr24:1447500-1446990 (view UCSC Genome Browser custom track) |
Alignm length: | 544 |
Alignm identity: | 357 |
Alignm E-value: | 4.99983e-42 |
Alignm gaps (pig, cow): | 408, 35 |
Conread position: | 1-536 |
Cow position: | chr24:39678371-39677849 (view UCSC Genome Browser custom track) |
Alignm length: | 549 |
Alignm identity: | 367 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 149 |
Conread position: | 1-617 |
Cow position: | chr24:12797824-12798436 (view UCSC Genome Browser custom track) |
Alignm length: | 629 |
Alignm identity: | 465 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 466, 141 |
Conread position: | 1-633 |
Cow position: | chr24:17187486-17186885 (view UCSC Genome Browser custom track) |
Alignm length: | 638 |
Alignm identity: | 451 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 153 |
Conread position: | 1-637 |
Cow position: | chr24:14384673-14385307 (view UCSC Genome Browser custom track) |
Alignm length: | 656 |
Alignm identity: | 442 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 41, 151 |
Conread position: | 1-697 |
Cow position: | chr24:6145300-6144600 (view UCSC Genome Browser custom track) |
Alignm length: | 716 |
Alignm identity: | 486 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 64, 146 |
Conread position: | 1-738 |
Cow position: | chr24:33739404-33740173 (view UCSC Genome Browser custom track) |
Alignm length: | 776 |
Alignm identity: | 507 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 117 |
Conread position: | 1-742 |
Cow position: | chr24:13021608-13020869 (view UCSC Genome Browser custom track) |
Alignm length: | 754 |
Alignm identity: | 494 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 100, 95 |
Conread position: | 1-749 |
Cow position: | chr24:6645355-6644576 (view UCSC Genome Browser custom track) |
Alignm length: | 783 |
Alignm identity: | 501 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 55 |
Conread position: | 1-889 |
Cow position: | chr24:9188791-9189711 (view UCSC Genome Browser custom track) |
Alignm length: | 927 |
Alignm identity: | 588 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 63, 146 |
Conread position: | 2-317 |
Cow position: | chr24:12086137-12085826 (view UCSC Genome Browser custom track) |
Alignm length: | 318 |
Alignm identity: | 230 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 38, 150 |
Conread position: | 2-437 |
Cow position: | chr24:32125573-32125980 (view UCSC Genome Browser custom track) |
Alignm length: | 438 |
Alignm identity: | 302 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 106, 55 |
Conread position: | 2-585 |
Cow position: | chr24:4415586-4416175 (view UCSC Genome Browser custom track) |
Alignm length: | 610 |
Alignm identity: | 423 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 27 |
Conread position: | 2-889 |
Cow position: | chr24:6434180-6433252 (view UCSC Genome Browser custom track) |
Alignm length: | 935 |
Alignm identity: | 603 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 48, 152 |
Conread position: | 3-633 |
Cow position: | chr24:12236992-12236358 (view UCSC Genome Browser custom track) |
Alignm length: | 645 |
Alignm identity: | 472 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 61, 148 |
Conread position: | 5-307 |
Cow position: | chr24:36707787-36707493 (view UCSC Genome Browser custom track) |
Alignm length: | 304 |
Alignm identity: | 212 |
Alignm E-value: | 4.00001e-41 |
Alignm gaps (pig, cow): | 143, 62 |
Conread position: | 6-603 |
Cow position: | chr24:14390790-14391384 (view UCSC Genome Browser custom track) |
Alignm length: | 610 |
Alignm identity: | 438 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 59, 70 |
Conread position: | 7-834 |
Cow position: | chr24:6025160-6026024 (view UCSC Genome Browser custom track) |
Alignm length: | 869 |
Alignm identity: | 567 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 7, 149 |
Conread position: | 7-888 |
Cow position: | chr24:16084725-16085661 (view UCSC Genome Browser custom track) |
Alignm length: | 942 |
Alignm identity: | 598 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 9, 184 |
Conread position: | 11-492 |
Cow position: | chr24:6335629-6335142 (view UCSC Genome Browser custom track) |
Alignm length: | 495 |
Alignm identity: | 376 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 41, 115 |
Conread position: | 11-515 |
Cow position: | chr24:12288796-12289290 (view UCSC Genome Browser custom track) |
Alignm length: | 507 |
Alignm identity: | 354 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 445, 136 |
Conread position: | 11-516 |
Cow position: | chr24:15392379-15392879 (view UCSC Genome Browser custom track) |
Alignm length: | 512 |
Alignm identity: | 384 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 256, 41 |
Conread position: | 11-634 |
Cow position: | chr24:19833311-19832693 (view UCSC Genome Browser custom track) |
Alignm length: | 636 |
Alignm identity: | 448 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 53, 140 |
Conread position: | 11-657 |
Cow position: | chr24:12131554-12132185 (view UCSC Genome Browser custom track) |
Alignm length: | 657 |
Alignm identity: | 384 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 24, 54 |
Conread position: | 12-540 |
Cow position: | chr24:35841683-35842182 (view UCSC Genome Browser custom track) |
Alignm length: | 535 |
Alignm identity: | 351 |
Alignm E-value: | 4.00001e-40 |
Alignm gaps (pig, cow): | 32, 146 |
Conread position: | 12-1146 |
Cow position: | chr24:16649371-16650499 (view UCSC Genome Browser custom track) |
Alignm length: | 1171 |
Alignm identity: | 837 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 117 |
Conread position: | 13-527 |
Cow position: | chr24:12568178-12567655 (view UCSC Genome Browser custom track) |
Alignm length: | 536 |
Alignm identity: | 334 |
Alignm E-value: | 9e-27 |
Alignm gaps (pig, cow): | 56, 49 |
Conread position: | 14-405 |
Cow position: | chr24:6537488-6537102 (view UCSC Genome Browser custom track) |
Alignm length: | 402 |
Alignm identity: | 261 |
Alignm E-value: | 3e-28 |
Alignm gaps (pig, cow): | 19, 107 |
Conread position: | 16-348 |
Cow position: | chr24:13181423-13181739 (view UCSC Genome Browser custom track) |
Alignm length: | 333 |
Alignm identity: | 243 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 36, 0 |
Conread position: | 16-891 |
Cow position: | chr24:12224555-12225438 (view UCSC Genome Browser custom track) |
Alignm length: | 897 |
Alignm identity: | 544 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 48, 96 |
Conread position: | 22-267 |
Cow position: | chr24:37301162-37301401 (view UCSC Genome Browser custom track) |
Alignm length: | 247 |
Alignm identity: | 191 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 83, 118 |
Conread position: | 23-330 |
Cow position: | chr24:35990743-35991038 (view UCSC Genome Browser custom track) |
Alignm length: | 309 |
Alignm identity: | 227 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 23, 30 |
Conread position: | 23-370 |
Cow position: | chr24:20268136-20267787 (view UCSC Genome Browser custom track) |
Alignm length: | 353 |
Alignm identity: | 255 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 27, 77 |
Conread position: | 23-565 |
Cow position: | chr24:37216651-37216101 (view UCSC Genome Browser custom track) |
Alignm length: | 557 |
Alignm identity: | 437 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 30, 137 |
Conread position: | 26-633 |
Cow position: | chr24:13531618-13532200 (view UCSC Genome Browser custom track) |
Alignm length: | 616 |
Alignm identity: | 406 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 26, 46 |
Conread position: | 28-307 |
Cow position: | chr24:23098527-23098804 (view UCSC Genome Browser custom track) |
Alignm length: | 290 |
Alignm identity: | 194 |
Alignm E-value: | 5e-22 |
Alignm gaps (pig, cow): | 38, 118 |
Conread position: | 33-456 |
Cow position: | chr24:14873433-14873844 (view UCSC Genome Browser custom track) |
Alignm length: | 429 |
Alignm identity: | 266 |
Alignm E-value: | 2e-22 |
Alignm gaps (pig, cow): | 21, 113 |
Conread position: | 33-912 |
Cow position: | chr24:5993069-5993981 (view UCSC Genome Browser custom track) |
Alignm length: | 923 |
Alignm identity: | 578 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 36, 111 |
Conread position: | 56-335 |
Cow position: | chr24:36297051-36296772 (view UCSC Genome Browser custom track) |
Alignm length: | 287 |
Alignm identity: | 193 |
Alignm E-value: | 3e-28 |
Alignm gaps (pig, cow): | 202, 64 |
Conread position: | 56-535 |
Cow position: | chr24:38635620-38635159 (view UCSC Genome Browser custom track) |
Alignm length: | 482 |
Alignm identity: | 321 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 209, 24 |
Conread position: | 57-330 |
Cow position: | chr24:32331221-32330957 (view UCSC Genome Browser custom track) |
Alignm length: | 274 |
Alignm identity: | 194 |
Alignm E-value: | 3e-38 |
Alignm gaps (pig, cow): | 34, 0 |
Conread position: | 65-634 |
Cow position: | chr24:29186678-29186112 (view UCSC Genome Browser custom track) |
Alignm length: | 582 |
Alignm identity: | 411 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 383, 85 |
Conread position: | 88-911 |
Cow position: | chr24:7712449-7713295 (view UCSC Genome Browser custom track) |
Alignm length: | 859 |
Alignm identity: | 536 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 200, 62 |
Conread position: | 103-574 |
Cow position: | chr24:17314479-17314939 (view UCSC Genome Browser custom track) |
Alignm length: | 475 |
Alignm identity: | 358 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 161, 47 |
Conread position: | 104-631 |
Cow position: | chr24:14583930-14583427 (view UCSC Genome Browser custom track) |
Alignm length: | 536 |
Alignm identity: | 359 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 306, 20 |
Conread position: | 108-536 |
Cow position: | chr24:148763-149180 (view UCSC Genome Browser custom track) |
Alignm length: | 433 |
Alignm identity: | 305 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 340, 42 |
Conread position: | 150-326 |
Cow position: | chr24:30117302-30117125 (view UCSC Genome Browser custom track) |
Alignm length: | 180 |
Alignm identity: | 128 |
Alignm E-value: | 2e-22 |
Alignm gaps (pig, cow): | 25, 15 |
Conread position: | 150-520 |
Cow position: | chr24:29372522-29372897 (view UCSC Genome Browser custom track) |
Alignm length: | 383 |
Alignm identity: | 247 |
Alignm E-value: | 1e-27 |
Alignm gaps (pig, cow): | 63, 102 |
Conread position: | 207-565 |
Cow position: | chr24:11156890-11157239 (view UCSC Genome Browser custom track) |
Alignm length: | 364 |
Alignm identity: | 242 |
Alignm E-value: | 8e-36 |
Alignm gaps (pig, cow): | 31, 11 |
Conread position: | 207-631 |
Cow position: | chr24:37301321-37301735 (view UCSC Genome Browser custom track) |
Alignm length: | 436 |
Alignm identity: | 292 |
Alignm E-value: | 1e-39 |
Alignm gaps (pig, cow): | 31, 11 |
Conread position: | 218-614 |
Cow position: | chr24:9544548-9544154 (view UCSC Genome Browser custom track) |
Alignm length: | 411 |
Alignm identity: | 282 |
Alignm E-value: | 2.00386e-43 |
Alignm gaps (pig, cow): | 230, 68 |
Conread position: | 219-911 |
Cow position: | chr24:6083696-6082997 (view UCSC Genome Browser custom track) |
Alignm length: | 708 |
Alignm identity: | 454 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 9, 90 |
Conread position: | 237-669 |
Cow position: | chr24:10657735-10657292 (view UCSC Genome Browser custom track) |
Alignm length: | 445 |
Alignm identity: | 272 |
Alignm E-value: | 1e-27 |
Alignm gaps (pig, cow): | 230, 297 |
Conread position: | 245-525 |
Cow position: | chr24:6357706-6357437 (view UCSC Genome Browser custom track) |
Alignm length: | 288 |
Alignm identity: | 201 |
Alignm E-value: | 1e-27 |
Alignm gaps (pig, cow): | 203, 43 |
Conread position: | 253-729 |
Cow position: | chr24:36560535-36561025 (view UCSC Genome Browser custom track) |
Alignm length: | 495 |
Alignm identity: | 364 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 13, 208 |
Conread position: | 306-911 |
Cow position: | chr24:29306210-29306826 (view UCSC Genome Browser custom track) |
Alignm length: | 623 |
Alignm identity: | 384 |
Alignm E-value: | 4.00001e-41 |
Alignm gaps (pig, cow): | 11, 194 |
Conread position: | 310-520 |
Cow position: | chr24:36707265-36707056 (view UCSC Genome Browser custom track) |
Alignm length: | 215 |
Alignm identity: | 153 |
Alignm E-value: | 1e-27 |
Alignm gaps (pig, cow): | 156, 29 |
Conread position: | 340-690 |
Cow position: | chr24:12208959-12209306 (view UCSC Genome Browser custom track) |
Alignm length: | 356 |
Alignm identity: | 239 |
Alignm E-value: | 1e-37 |
Alignm gaps (pig, cow): | 78, 46 |
Conread position: | 341-889 |
Cow position: | chr24:13187118-13186553 (view UCSC Genome Browser custom track) |
Alignm length: | 570 |
Alignm identity: | 348 |
Alignm E-value: | 2e-31 |
Alignm gaps (pig, cow): | 5, 440 |
Conread position: | 391-751 |
Cow position: | chr24:12114563-12114933 (view UCSC Genome Browser custom track) |
Alignm length: | 372 |
Alignm identity: | 255 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 76, 140 |
Conread position: | 542-1152 |
Cow position: | chr24:12289956-12290574 (view UCSC Genome Browser custom track) |
Alignm length: | 637 |
Alignm identity: | 409 |
Alignm E-value: | 6.02558e-44 |
Alignm gaps (pig, cow): | 19, 191 |
Conread position: | 563-1131 |
Cow position: | chr24:33432089-33431550 (view UCSC Genome Browser custom track) |
Alignm length: | 573 |
Alignm identity: | 386 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 17, 37 |
Conread position: | 608-1140 |
Cow position: | chr24:17315166-17315704 (view UCSC Genome Browser custom track) |
Alignm length: | 551 |
Alignm identity: | 370 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 9, 67 |
Conread position: | 642-1126 |
Cow position: | chr24:35992130-35992626 (view UCSC Genome Browser custom track) |
Alignm length: | 505 |
Alignm identity: | 326 |
Alignm E-value: | 1e-39 |
Alignm gaps (pig, cow): | 112, 24 |
Conread position: | 705-1134 |
Cow position: | chr24:27206933-27206512 (view UCSC Genome Browser custom track) |
Alignm length: | 439 |
Alignm identity: | 287 |
Alignm E-value: | 2e-35 |
Alignm gaps (pig, cow): | 51, 144 |
Conread position: | 739-1149 |
Cow position: | chr24:30555514-30555116 (view UCSC Genome Browser custom track) |
Alignm length: | 423 |
Alignm identity: | 273 |
Alignm E-value: | 3e-26 |
Alignm gaps (pig, cow): | 16, 96 |
Conread position: | 784-1146 |
Cow position: | chr24:36561055-36561420 (view UCSC Genome Browser custom track) |
Alignm length: | 370 |
Alignm identity: | 254 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 222, 16 |
Conread position: | 865-1137 |
Cow position: | chr24:12798640-12798923 (view UCSC Genome Browser custom track) |
Alignm length: | 286 |
Alignm identity: | 187 |
Alignm E-value: | 2e-21 |
Alignm gaps (pig, cow): | 67, 39 |
Conread position: | 927-1111 |
Cow position: | chr24:17184294-17184102 (view UCSC Genome Browser custom track) |
Alignm length: | 193 |
Alignm identity: | 137 |
Alignm E-value: | 6e-23 |
Alignm gaps (pig, cow): | 79, 0 |
Conread position: | 927-1111 |
Cow position: | chr24:17186649-17186457 (view UCSC Genome Browser custom track) |
Alignm length: | 193 |
Alignm identity: | 137 |
Alignm E-value: | 6e-23 |
Alignm gaps (pig, cow): | 79, 0 |
Show alignments to all cow chromosomes.