Cow genome map

Conread name: Ss1.1-Tra1-TCH01E040098.5

Conread position: 1-200
Cow position: chr24:8030091-8029890 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 151
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 49, 146

Conread position: 1-210
Cow position: chr24:2636060-2635849 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 157
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 49, 99

Conread position: 1-264
Cow position: chr24:36560143-36560396 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 200
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 51, 104

Conread position: 1-270
Cow position: chr24:35838685-35838957 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 218

Conread position: 1-271
Cow position: chr24:12485377-12485649 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 195
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 49, 146

Conread position: 1-291
Cow position: chr24:14885300-14885597 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 206
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 83, 65

Conread position: 1-295
Cow position: chr24:13188125-13187837 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 208
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 63, 150

Conread position: 1-327
Cow position: chr24:12208079-12207757 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 233
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 51, 73

Conread position: 1-363
Cow position: chr24:6083957-6083593 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 153

Conread position: 1-370
Cow position: chr24:7061042-7060681 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 146

Conread position: 1-370
Cow position: chr24:44017486-44017115 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 99

Conread position: 1-376
Cow position: chr24:12114099-12114468 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 23

Conread position: 1-418
Cow position: chr24:22793114-22792700 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 143

Conread position: 1-435
Cow position: chr24:33933306-33932866 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 151

Conread position: 1-520
Cow position: chr24:12161819-12161306 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 102

Conread position: 1-534
Cow position: chr24:6057614-6057099 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 129

Conread position: 1-534
Cow position: chr24:6352136-6351611 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 297

Conread position: 1-535
Cow position: chr24:1447500-1446990 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 357
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 408, 35

Conread position: 1-536
Cow position: chr24:39678371-39677849 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 149

Conread position: 1-617
Cow position: chr24:12797824-12798436 (view UCSC Genome Browser custom track)
Alignm length: 629
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 466, 141

Conread position: 1-633
Cow position: chr24:17187486-17186885 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 153

Conread position: 1-637
Cow position: chr24:14384673-14385307 (view UCSC Genome Browser custom track)
Alignm length: 656
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 151

Conread position: 1-697
Cow position: chr24:6145300-6144600 (view UCSC Genome Browser custom track)
Alignm length: 716
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 146

Conread position: 1-738
Cow position: chr24:33739404-33740173 (view UCSC Genome Browser custom track)
Alignm length: 776
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 117

Conread position: 1-742
Cow position: chr24:13021608-13020869 (view UCSC Genome Browser custom track)
Alignm length: 754
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 95

Conread position: 1-749
Cow position: chr24:6645355-6644576 (view UCSC Genome Browser custom track)
Alignm length: 783
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 55

Conread position: 1-889
Cow position: chr24:9188791-9189711 (view UCSC Genome Browser custom track)
Alignm length: 927
Alignm identity: 588
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 146

Conread position: 2-317
Cow position: chr24:12086137-12085826 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 150

Conread position: 2-437
Cow position: chr24:32125573-32125980 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 55

Conread position: 2-585
Cow position: chr24:4415586-4416175 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 27

Conread position: 2-889
Cow position: chr24:6434180-6433252 (view UCSC Genome Browser custom track)
Alignm length: 935
Alignm identity: 603
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 152

Conread position: 3-633
Cow position: chr24:12236992-12236358 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 148

Conread position: 5-307
Cow position: chr24:36707787-36707493 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 212
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 143, 62

Conread position: 6-603
Cow position: chr24:14390790-14391384 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 70

Conread position: 7-834
Cow position: chr24:6025160-6026024 (view UCSC Genome Browser custom track)
Alignm length: 869
Alignm identity: 567
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 149

Conread position: 7-888
Cow position: chr24:16084725-16085661 (view UCSC Genome Browser custom track)
Alignm length: 942
Alignm identity: 598
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 184

Conread position: 11-492
Cow position: chr24:6335629-6335142 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 115

Conread position: 11-515
Cow position: chr24:12288796-12289290 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 445, 136

Conread position: 11-516
Cow position: chr24:15392379-15392879 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 256, 41

Conread position: 11-634
Cow position: chr24:19833311-19832693 (view UCSC Genome Browser custom track)
Alignm length: 636
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 140

Conread position: 11-657
Cow position: chr24:12131554-12132185 (view UCSC Genome Browser custom track)
Alignm length: 657
Alignm identity: 384
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 24, 54

Conread position: 12-540
Cow position: chr24:35841683-35842182 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 351
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 32, 146

Conread position: 12-1146
Cow position: chr24:16649371-16650499 (view UCSC Genome Browser custom track)
Alignm length: 1171
Alignm identity: 837
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 117

Conread position: 13-527
Cow position: chr24:12568178-12567655 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 334
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 56, 49

Conread position: 14-405
Cow position: chr24:6537488-6537102 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 261
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 19, 107

Conread position: 16-348
Cow position: chr24:13181423-13181739 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 16-891
Cow position: chr24:12224555-12225438 (view UCSC Genome Browser custom track)
Alignm length: 897
Alignm identity: 544
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 96

Conread position: 22-267
Cow position: chr24:37301162-37301401 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 118

Conread position: 23-330
Cow position: chr24:35990743-35991038 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 30

Conread position: 23-370
Cow position: chr24:20268136-20267787 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 77

Conread position: 23-565
Cow position: chr24:37216651-37216101 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 137

Conread position: 26-633
Cow position: chr24:13531618-13532200 (view UCSC Genome Browser custom track)
Alignm length: 616
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 46

Conread position: 28-307
Cow position: chr24:23098527-23098804 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 194
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 38, 118

Conread position: 33-456
Cow position: chr24:14873433-14873844 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 266
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 21, 113

Conread position: 33-912
Cow position: chr24:5993069-5993981 (view UCSC Genome Browser custom track)
Alignm length: 923
Alignm identity: 578
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 111

Conread position: 56-335
Cow position: chr24:36297051-36296772 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 193
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 202, 64

Conread position: 56-535
Cow position: chr24:38635620-38635159 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 24

Conread position: 57-330
Cow position: chr24:32331221-32330957 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 194
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 34, 0

Conread position: 65-634
Cow position: chr24:29186678-29186112 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 383, 85

Conread position: 88-911
Cow position: chr24:7712449-7713295 (view UCSC Genome Browser custom track)
Alignm length: 859
Alignm identity: 536
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 62

Conread position: 103-574
Cow position: chr24:17314479-17314939 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 47

Conread position: 104-631
Cow position: chr24:14583930-14583427 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 306, 20

Conread position: 108-536
Cow position: chr24:148763-149180 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 340, 42

Conread position: 150-326
Cow position: chr24:30117302-30117125 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 128
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 25, 15

Conread position: 150-520
Cow position: chr24:29372522-29372897 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 247
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 63, 102

Conread position: 207-565
Cow position: chr24:11156890-11157239 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 242
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 31, 11

Conread position: 207-631
Cow position: chr24:37301321-37301735 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 292
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 31, 11

Conread position: 218-614
Cow position: chr24:9544548-9544154 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 282
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 230, 68

Conread position: 219-911
Cow position: chr24:6083696-6082997 (view UCSC Genome Browser custom track)
Alignm length: 708
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 90

Conread position: 237-669
Cow position: chr24:10657735-10657292 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 272
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 230, 297

Conread position: 245-525
Cow position: chr24:6357706-6357437 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 201
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 203, 43

Conread position: 253-729
Cow position: chr24:36560535-36561025 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 208

Conread position: 306-911
Cow position: chr24:29306210-29306826 (view UCSC Genome Browser custom track)
Alignm length: 623
Alignm identity: 384
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 11, 194

Conread position: 310-520
Cow position: chr24:36707265-36707056 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 153
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 156, 29

Conread position: 340-690
Cow position: chr24:12208959-12209306 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 239
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 78, 46

Conread position: 341-889
Cow position: chr24:13187118-13186553 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 348
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 5, 440

Conread position: 391-751
Cow position: chr24:12114563-12114933 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 140

Conread position: 542-1152
Cow position: chr24:12289956-12290574 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 409
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 19, 191

Conread position: 563-1131
Cow position: chr24:33432089-33431550 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 37

Conread position: 608-1140
Cow position: chr24:17315166-17315704 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 67

Conread position: 642-1126
Cow position: chr24:35992130-35992626 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 326
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 112, 24

Conread position: 705-1134
Cow position: chr24:27206933-27206512 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 287
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 51, 144

Conread position: 739-1149
Cow position: chr24:30555514-30555116 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 273
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 16, 96

Conread position: 784-1146
Cow position: chr24:36561055-36561420 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 16

Conread position: 865-1137
Cow position: chr24:12798640-12798923 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 187
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 67, 39

Conread position: 927-1111
Cow position: chr24:17184294-17184102 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 137
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 79, 0

Conread position: 927-1111
Cow position: chr24:17186649-17186457 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 137
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 79, 0

Show alignments to all cow chromosomes.