Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01E040098.5 |
| Conread position: | 1-160 |
| Cow position: | chr25:36240443-36240282 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 60, 152 |
| Conread position: | 1-252 |
| Cow position: | chr25:34656548-34656801 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 146 |
| Conread position: | 1-520 |
| Cow position: | chr25:12759699-12760221 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 342 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 22, 78 |
| Conread position: | 1-527 |
| Cow position: | chr25:23345810-23346317 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 54 |
| Conread position: | 1-567 |
| Cow position: | chr25:17468799-17469351 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 63 |
| Conread position: | 1-631 |
| Cow position: | chr25:18027729-18028329 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 156 |
| Conread position: | 1-744 |
| Cow position: | chr25:26922125-26921352 (view UCSC Genome Browser custom track) |
| Alignm length: | 777 |
| Alignm identity: | 500 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 164 |
| Conread position: | 1-889 |
| Cow position: | chr25:19916981-19916067 (view UCSC Genome Browser custom track) |
| Alignm length: | 927 |
| Alignm identity: | 591 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 154 |
| Conread position: | 1-911 |
| Cow position: | chr25:33991161-33992079 (view UCSC Genome Browser custom track) |
| Alignm length: | 930 |
| Alignm identity: | 567 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 21 |
| Conread position: | 1-911 |
| Cow position: | chr25:35362526-35363468 (view UCSC Genome Browser custom track) |
| Alignm length: | 948 |
| Alignm identity: | 606 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 290, 149 |
| Conread position: | 2-278 |
| Cow position: | chr25:20629473-20629195 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 152 |
| Conread position: | 2-455 |
| Cow position: | chr25:11933629-11934089 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 44 |
| Conread position: | 2-525 |
| Cow position: | chr25:22147390-22146876 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 96 |
| Conread position: | 2-633 |
| Cow position: | chr25:18060690-18061303 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 137 |
| Conread position: | 2-634 |
| Cow position: | chr25:18890119-18890737 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 38 |
| Conread position: | 2-634 |
| Cow position: | chr25:34347096-34347723 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 114 |
| Conread position: | 2-889 |
| Cow position: | chr25:17589651-17590550 (view UCSC Genome Browser custom track) |
| Alignm length: | 913 |
| Alignm identity: | 586 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 166 |
| Conread position: | 3-523 |
| Cow position: | chr25:24171922-24171421 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 338 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 46, 141 |
| Conread position: | 6-346 |
| Cow position: | chr25:18255470-18255804 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 17, 56 |
| Conread position: | 7-749 |
| Cow position: | chr25:32579858-32579100 (view UCSC Genome Browser custom track) |
| Alignm length: | 780 |
| Alignm identity: | 506 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 119 |
| Conread position: | 8-369 |
| Cow position: | chr25:17563030-17563374 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 8-502 |
| Cow position: | chr25:17560721-17561208 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 412, 54 |
| Conread position: | 8-919 |
| Cow position: | chr25:18275933-18276867 (view UCSC Genome Browser custom track) |
| Alignm length: | 942 |
| Alignm identity: | 665 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 140 |
| Conread position: | 11-267 |
| Cow position: | chr25:14016059-14015806 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 11-309 |
| Cow position: | chr25:18411400-18411694 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 121 |
| Conread position: | 11-370 |
| Cow position: | chr25:20777010-20777372 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 170 |
| Conread position: | 11-522 |
| Cow position: | chr25:19288464-19288962 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 131 |
| Conread position: | 11-527 |
| Cow position: | chr25:21901958-21901475 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 336 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 170, 44 |
| Conread position: | 11-634 |
| Cow position: | chr25:26867112-26866485 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 143 |
| Conread position: | 11-638 |
| Cow position: | chr25:11375461-11376071 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 141 |
| Conread position: | 12-418 |
| Cow position: | chr25:25506536-25506140 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 142 |
| Conread position: | 12-634 |
| Cow position: | chr25:8674801-8674197 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 142 |
| Conread position: | 12-634 |
| Cow position: | chr25:13780917-13780304 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 16 |
| Conread position: | 13-535 |
| Cow position: | chr25:18092904-18092381 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 141 |
| Conread position: | 18-535 |
| Cow position: | chr25:18421529-18421031 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 331 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 24, 116 |
| Conread position: | 23-474 |
| Cow position: | chr25:26279141-26278711 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 124 |
| Conread position: | 55-255 |
| Cow position: | chr25:12943597-12943796 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 9, 96 |
| Conread position: | 56-633 |
| Cow position: | chr25:18302615-18302040 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 139 |
| Conread position: | 58-514 |
| Cow position: | chr25:20494198-20493756 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 408, 84 |
| Conread position: | 87-496 |
| Cow position: | chr25:34014539-34014936 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 361, 63 |
| Conread position: | 102-826 |
| Cow position: | chr25:18173128-18172387 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 554 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 48 |
| Conread position: | 197-597 |
| Cow position: | chr25:15444094-15443662 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 276 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 214-539 |
| Cow position: | chr25:36239911-36239602 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 218 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 266-600 |
| Cow position: | chr25:12944109-12944444 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 30, 87 |
| Conread position: | 277-417 |
| Cow position: | chr25:34657349-34657489 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 297-687 |
| Cow position: | chr25:18411640-18412022 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 152 |
| Conread position: | 351-825 |
| Cow position: | chr25:32979511-32979990 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 305 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 116, 262 |
| Conread position: | 363-911 |
| Cow position: | chr25:20777398-20777958 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 350 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 104, 176 |
| Conread position: | 385-631 |
| Cow position: | chr25:14015758-14015514 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 121, 45 |
| Conread position: | 558-845 |
| Cow position: | chr25:18092241-18091951 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 212 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 6, 128 |
| Conread position: | 705-1094 |
| Cow position: | chr25:18412010-18412385 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 37, 99 |
| Conread position: | 835-1138 |
| Cow position: | chr25:18172405-18172093 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 177, 70 |
| Conread position: | 899-1146 |
| Cow position: | chr25:18091637-18091384 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 112, 171 |
| Conread position: | 903-1141 |
| Cow position: | chr25:15378212-15377967 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 103, 92 |
| Conread position: | 927-1109 |
| Cow position: | chr25:14015309-14015118 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 86, 0 |
Show alignments to all cow chromosomes.