Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01E040098.5 |
| Conread position: | 1-267 |
| Cow position: | chr26:3691724-3691451 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 84 |
| Conread position: | 1-270 |
| Cow position: | chr26:4605264-4605533 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 127 |
| Conread position: | 1-271 |
| Cow position: | chr26:15144842-15145111 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 49, 33 |
| Conread position: | 1-290 |
| Cow position: | chr26:3074445-3074161 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 205 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 48, 161 |
| Conread position: | 1-321 |
| Cow position: | chr26:20254988-20254678 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 118 |
| Conread position: | 1-360 |
| Cow position: | chr26:8869795-8869436 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 145 |
| Conread position: | 1-434 |
| Cow position: | chr26:2198545-2198108 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 294 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 49, 153 |
| Conread position: | 1-535 |
| Cow position: | chr26:9850706-9851258 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 235 |
| Conread position: | 1-542 |
| Cow position: | chr26:9854172-9854724 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 241 |
| Conread position: | 1-630 |
| Cow position: | chr26:12574479-12575085 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 210 |
| Conread position: | 1-631 |
| Cow position: | chr26:23604980-23605591 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 182 |
| Conread position: | 1-889 |
| Cow position: | chr26:2352440-2353350 (view UCSC Genome Browser custom track) |
| Alignm length: | 924 |
| Alignm identity: | 593 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 146 |
| Conread position: | 1-889 |
| Cow position: | chr26:11254139-11255065 (view UCSC Genome Browser custom track) |
| Alignm length: | 933 |
| Alignm identity: | 593 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 154 |
| Conread position: | 1-911 |
| Cow position: | chr26:12588647-12589583 (view UCSC Genome Browser custom track) |
| Alignm length: | 950 |
| Alignm identity: | 616 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 167 |
| Conread position: | 1-911 |
| Cow position: | chr26:30782683-30781741 (view UCSC Genome Browser custom track) |
| Alignm length: | 948 |
| Alignm identity: | 606 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 55 |
| Conread position: | 2-208 |
| Cow position: | chr26:11536915-11537123 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 50, 146 |
| Conread position: | 2-280 |
| Cow position: | chr26:6850257-6850537 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 152 |
| Conread position: | 2-314 |
| Cow position: | chr26:5675086-5674773 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 154 |
| Conread position: | 2-447 |
| Cow position: | chr26:6516772-6516347 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 291 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 101, 8 |
| Conread position: | 2-614 |
| Cow position: | chr26:9563441-9564054 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 152 |
| Conread position: | 2-622 |
| Cow position: | chr26:17397013-17397644 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 155 |
| Conread position: | 2-634 |
| Cow position: | chr26:19351596-19352228 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 152 |
| Conread position: | 7-289 |
| Cow position: | chr26:18855001-18854723 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 201 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 7, 141 |
| Conread position: | 7-458 |
| Cow position: | chr26:8283134-8283566 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 295 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 29, 36 |
| Conread position: | 11-269 |
| Cow position: | chr26:16904685-16904435 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 61, 90 |
| Conread position: | 11-326 |
| Cow position: | chr26:6489129-6489437 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 206 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 84, 78 |
| Conread position: | 11-834 |
| Cow position: | chr26:9112374-9111515 (view UCSC Genome Browser custom track) |
| Alignm length: | 865 |
| Alignm identity: | 558 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 143 |
| Conread position: | 26-889 |
| Cow position: | chr26:3030917-3031808 (view UCSC Genome Browser custom track) |
| Alignm length: | 901 |
| Alignm identity: | 585 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 82 |
| Conread position: | 33-889 |
| Cow position: | chr26:24201505-24200630 (view UCSC Genome Browser custom track) |
| Alignm length: | 881 |
| Alignm identity: | 550 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 118 |
| Conread position: | 55-672 |
| Cow position: | chr26:19998347-19997701 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 41 |
| Conread position: | 59-1088 |
| Cow position: | chr26:9846278-9847311 (view UCSC Genome Browser custom track) |
| Alignm length: | 1055 |
| Alignm identity: | 755 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 354, 94 |
| Conread position: | 63-337 |
| Cow position: | chr26:12655798-12655540 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 207 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 198, 22 |
| Conread position: | 67-466 |
| Cow position: | chr26:20262695-20262340 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 284 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 78-890 |
| Cow position: | chr26:8918817-8917985 (view UCSC Genome Browser custom track) |
| Alignm length: | 848 |
| Alignm identity: | 500 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 72 |
| Conread position: | 101-910 |
| Cow position: | chr26:34012834-34012023 (view UCSC Genome Browser custom track) |
| Alignm length: | 824 |
| Alignm identity: | 603 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 366, 49 |
| Conread position: | 114-493 |
| Cow position: | chr26:30590439-30590808 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 334, 36 |
| Conread position: | 121-565 |
| Cow position: | chr26:35150078-35150493 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 315 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 289, 21 |
| Conread position: | 129-581 |
| Cow position: | chr26:19142507-19142095 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 308 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 338, 13 |
| Conread position: | 245-535 |
| Cow position: | chr26:6601649-6601371 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 190, 48 |
| Conread position: | 358-633 |
| Cow position: | chr26:6850704-6850989 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 99, 236 |
| Conread position: | 358-634 |
| Cow position: | chr26:5674465-5674176 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 78, 239 |
| Conread position: | 477-738 |
| Cow position: | chr26:9090198-9089930 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 136 |
| Conread position: | 520-1146 |
| Cow position: | chr26:20299855-20300491 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 24 |
| Conread position: | 553-1140 |
| Cow position: | chr26:9859593-9860173 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 153 |
| Conread position: | 555-1146 |
| Cow position: | chr26:20032369-20031769 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 120 |
| Conread position: | 635-1080 |
| Cow position: | chr26:21350265-21349804 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 311 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 44, 52 |
| Conread position: | 705-1132 |
| Cow position: | chr26:12575115-12575533 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 286 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 80, 54 |
| Conread position: | 936-1146 |
| Cow position: | chr26:21826288-21826500 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 75, 153 |
Show alignments to all cow chromosomes.