Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01E040098.5 |
| Conread position: | 1-266 |
| Cow position: | chr27:16439179-16438922 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1-268 |
| Cow position: | chr27:25002676-25002948 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 0 |
| Conread position: | 1-503 |
| Cow position: | chr27:3996521-3997022 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 330 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 18, 34 |
| Conread position: | 1-563 |
| Cow position: | chr27:16034538-16035123 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 133 |
| Conread position: | 1-911 |
| Cow position: | chr27:15541183-15540252 (view UCSC Genome Browser custom track) |
| Alignm length: | 941 |
| Alignm identity: | 597 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 99 |
| Conread position: | 1-1146 |
| Cow position: | chr27:26556127-26557245 (view UCSC Genome Browser custom track) |
| Alignm length: | 1162 |
| Alignm identity: | 840 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 297, 109 |
| Conread position: | 2-634 |
| Cow position: | chr27:9993352-9993970 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 58 |
| Conread position: | 2-634 |
| Cow position: | chr27:14460603-14461236 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 101 |
| Conread position: | 2-634 |
| Cow position: | chr27:23335017-23334386 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 152 |
| Conread position: | 3-634 |
| Cow position: | chr27:13898048-13897423 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 151 |
| Conread position: | 7-614 |
| Cow position: | chr27:5910715-5910110 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 105 |
| Conread position: | 7-890 |
| Cow position: | chr27:2364600-2363674 (view UCSC Genome Browser custom track) |
| Alignm length: | 935 |
| Alignm identity: | 611 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 243 |
| Conread position: | 10-153 |
| Cow position: | chr27:26227141-26226999 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 11, 38 |
| Conread position: | 11-265 |
| Cow position: | chr27:15278218-15278476 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 145 |
| Conread position: | 11-270 |
| Cow position: | chr27:27051509-27051248 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 143 |
| Conread position: | 11-501 |
| Cow position: | chr27:25999214-25999689 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 128 |
| Conread position: | 11-518 |
| Cow position: | chr27:25117088-25116594 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 20 |
| Conread position: | 11-519 |
| Cow position: | chr27:5906869-5906377 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 328 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 255, 69 |
| Conread position: | 11-623 |
| Cow position: | chr27:26324659-26324042 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 143 |
| Conread position: | 11-634 |
| Cow position: | chr27:27662739-27662115 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 135 |
| Conread position: | 12-634 |
| Cow position: | chr27:893053-892441 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 139 |
| Conread position: | 13-634 |
| Cow position: | chr27:1209194-1208578 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 121 |
| Conread position: | 13-717 |
| Cow position: | chr27:25805038-25805739 (view UCSC Genome Browser custom track) |
| Alignm length: | 722 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 134 |
| Conread position: | 14-470 |
| Cow position: | chr27:21288379-21288822 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 300 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 35, 42 |
| Conread position: | 82-270 |
| Cow position: | chr27:16432242-16432055 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 111-545 |
| Cow position: | chr27:11471652-11472070 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 38 |
| Conread position: | 129-314 |
| Cow position: | chr27:23930420-23930604 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 154-270 |
| Cow position: | chr27:27308071-27307955 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 187-633 |
| Cow position: | chr27:5985427-5985863 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 28 |
| Conread position: | 203-613 |
| Cow position: | chr27:15638859-15639266 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 245, 128 |
| Conread position: | 207-633 |
| Cow position: | chr27:27308038-27307625 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 295 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 31, 11 |
| Conread position: | 266-633 |
| Cow position: | chr27:16438943-16438575 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 27 |
| Conread position: | 271-463 |
| Cow position: | chr27:15279030-15279222 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 5, 184 |
| Conread position: | 279-633 |
| Cow position: | chr27:25002919-25003268 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 71 |
| Conread position: | 300-633 |
| Cow position: | chr27:16432054-16431726 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 239 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 166, 49 |
| Conread position: | 318-600 |
| Cow position: | chr27:15331554-15331277 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 181 |
| Conread position: | 590-1142 |
| Cow position: | chr27:25116557-25115993 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 146 |
| Conread position: | 705-1146 |
| Cow position: | chr27:15331269-15330813 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 198 |
| Conread position: | 845-1146 |
| Cow position: | chr27:25003413-25003720 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 161, 59 |
| Conread position: | 936-1150 |
| Cow position: | chr27:16431485-16431266 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 70, 26 |
Show alignments to all cow chromosomes.