Cow genome map

Conread name: Ss1.1-Tra1-TCH01E040098.5

Conread position: 1-125
Cow position: chr28:24652190-24652062 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 109
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 51, 0

Conread position: 1-154
Cow position: chr28:2846600-2846751 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 131, 30

Conread position: 1-197
Cow position: chr28:4380921-4381108 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 160
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 51, 9

Conread position: 1-270
Cow position: chr28:9954036-9953763 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 155

Conread position: 1-347
Cow position: chr28:9155386-9155711 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 109

Conread position: 1-585
Cow position: chr28:7901250-7900703 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 71

Conread position: 1-715
Cow position: chr28:21325688-21324971 (view UCSC Genome Browser custom track)
Alignm length: 730
Alignm identity: 541
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 45

Conread position: 1-720
Cow position: chr28:6780430-6781176 (view UCSC Genome Browser custom track)
Alignm length: 751
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 153

Conread position: 1-763
Cow position: chr28:13440978-13441777 (view UCSC Genome Browser custom track)
Alignm length: 803
Alignm identity: 528
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 99

Conread position: 1-835
Cow position: chr28:8721550-8722380 (view UCSC Genome Browser custom track)
Alignm length: 862
Alignm identity: 625
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 22

Conread position: 1-889
Cow position: chr28:1953029-1952123 (view UCSC Genome Browser custom track)
Alignm length: 928
Alignm identity: 593
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 55

Conread position: 1-889
Cow position: chr28:15950880-15949957 (view UCSC Genome Browser custom track)
Alignm length: 928
Alignm identity: 593
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 153

Conread position: 1-891
Cow position: chr28:1387496-1388353 (view UCSC Genome Browser custom track)
Alignm length: 897
Alignm identity: 638
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 54

Conread position: 1-1138
Cow position: chr28:21358913-21357781 (view UCSC Genome Browser custom track)
Alignm length: 1158
Alignm identity: 877
Alignm E-value: 0
Alignm gaps (pig, cow): 383, 54

Conread position: 1-1149
Cow position: chr28:7817120-7816003 (view UCSC Genome Browser custom track)
Alignm length: 1184
Alignm identity: 797
Alignm E-value: 0
Alignm gaps (pig, cow): 465, 51

Conread position: 2-232
Cow position: chr28:14491356-14491131 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 162
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 42, 0

Conread position: 2-475
Cow position: chr28:17388379-17387912 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 152

Conread position: 2-503
Cow position: chr28:782293-781800 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 149

Conread position: 2-503
Cow position: chr28:10582088-10582578 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 151

Conread position: 2-530
Cow position: chr28:22827950-22827434 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 125

Conread position: 2-538
Cow position: chr28:7001886-7001369 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 145

Conread position: 2-578
Cow position: chr28:5796713-5796142 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 369, 60

Conread position: 2-600
Cow position: chr28:5565759-5565162 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 152

Conread position: 2-614
Cow position: chr28:17667616-17668226 (view UCSC Genome Browser custom track)
Alignm length: 630
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 24

Conread position: 2-616
Cow position: chr28:13522625-13522021 (view UCSC Genome Browser custom track)
Alignm length: 629
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 144

Conread position: 2-632
Cow position: chr28:26426376-26426988 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 82

Conread position: 2-633
Cow position: chr28:18520563-18521210 (view UCSC Genome Browser custom track)
Alignm length: 664
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 152

Conread position: 2-634
Cow position: chr28:8378462-8377826 (view UCSC Genome Browser custom track)
Alignm length: 652
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 152

Conread position: 2-634
Cow position: chr28:22261253-22261873 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 150

Conread position: 2-634
Cow position: chr28:29819468-29818838 (view UCSC Genome Browser custom track)
Alignm length: 653
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 152

Conread position: 2-889
Cow position: chr28:15920568-15921473 (view UCSC Genome Browser custom track)
Alignm length: 921
Alignm identity: 558
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 375

Conread position: 2-1146
Cow position: chr28:5812606-5811453 (view UCSC Genome Browser custom track)
Alignm length: 1171
Alignm identity: 886
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 142

Conread position: 3-532
Cow position: chr28:2083501-2082979 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 151

Conread position: 3-627
Cow position: chr28:2591813-2591218 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 69

Conread position: 3-887
Cow position: chr28:10619209-10620093 (view UCSC Genome Browser custom track)
Alignm length: 901
Alignm identity: 643
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 67

Conread position: 6-503
Cow position: chr28:13459865-13459377 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 148

Conread position: 7-248
Cow position: chr28:7822150-7821915 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 176
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 43, 147

Conread position: 10-375
Cow position: chr28:3773946-3774311 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 246
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 165, 129

Conread position: 11-265
Cow position: chr28:17330634-17330899 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 197
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 41, 80

Conread position: 11-266
Cow position: chr28:1814979-1815235 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 74

Conread position: 11-329
Cow position: chr28:15585279-15584964 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 208
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 299, 131

Conread position: 11-370
Cow position: chr28:14750437-14750075 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 136

Conread position: 11-440
Cow position: chr28:24587322-24586894 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 165
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 39, 136

Conread position: 11-522
Cow position: chr28:34324714-34324211 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 325
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 36, 132

Conread position: 11-525
Cow position: chr28:1168275-1168786 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 143

Conread position: 11-591
Cow position: chr28:18089115-18089684 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 74

Conread position: 11-614
Cow position: chr28:12150204-12149613 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 433, 56

Conread position: 11-614
Cow position: chr28:32792490-32793086 (view UCSC Genome Browser custom track)
Alignm length: 620
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 143

Conread position: 11-631
Cow position: chr28:15681778-15681189 (view UCSC Genome Browser custom track)
Alignm length: 628
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 227, 134

Conread position: 11-634
Cow position: chr28:14705783-14706410 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 73

Conread position: 12-501
Cow position: chr28:34593731-34593250 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 142

Conread position: 16-546
Cow position: chr28:34648816-34648309 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 64

Conread position: 26-497
Cow position: chr28:26007903-26007445 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 68

Conread position: 55-330
Cow position: chr28:18181514-18181776 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 191
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 105, 0

Conread position: 68-633
Cow position: chr28:5115252-5115806 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 380, 73

Conread position: 100-911
Cow position: chr28:489286-488444 (view UCSC Genome Browser custom track)
Alignm length: 848
Alignm identity: 531
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 50

Conread position: 101-753
Cow position: chr28:7790444-7791090 (view UCSC Genome Browser custom track)
Alignm length: 669
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 263, 49

Conread position: 111-525
Cow position: chr28:33252129-33251697 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 39

Conread position: 114-264
Cow position: chr28:9137246-9137394 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 115
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 27, 0

Conread position: 114-525
Cow position: chr28:5752378-5752782 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 36

Conread position: 114-612
Cow position: chr28:7740037-7739563 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 442, 39

Conread position: 114-811
Cow position: chr28:2990184-2990878 (view UCSC Genome Browser custom track)
Alignm length: 718
Alignm identity: 523
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 36

Conread position: 119-634
Cow position: chr28:1504418-1503903 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 329, 31

Conread position: 120-518
Cow position: chr28:15035640-15036028 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 328, 30

Conread position: 127-634
Cow position: chr28:15378245-15378752 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 321, 24

Conread position: 130-1113
Cow position: chr28:24667380-24666406 (view UCSC Genome Browser custom track)
Alignm length: 1004
Alignm identity: 739
Alignm E-value: 0
Alignm gaps (pig, cow): 335, 20

Conread position: 135-474
Cow position: chr28:28973463-28973789 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 226
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 135, 0

Conread position: 137-567
Cow position: chr28:3193014-3193436 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 311, 210

Conread position: 138-543
Cow position: chr28:10464084-10464481 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 271
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 10, 133

Conread position: 156-518
Cow position: chr28:5936762-5936408 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 250
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 301, 92

Conread position: 219-456
Cow position: chr28:12410816-12411064 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 174
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 129, 74

Conread position: 237-889
Cow position: chr28:7821131-7820466 (view UCSC Genome Browser custom track)
Alignm length: 672
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 33

Conread position: 277-631
Cow position: chr28:4381752-4382115 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 90

Conread position: 293-629
Cow position: chr28:17331050-17331375 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 227
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 177, 56

Conread position: 302-829
Cow position: chr28:6663867-6663326 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 341
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 15, 303

Conread position: 383-585
Cow position: chr28:9156886-9157096 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 145
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 84, 0

Conread position: 553-1146
Cow position: chr28:17314306-17313702 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 148

Conread position: 563-706
Cow position: chr28:2925259-2925112 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 112
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 24, 141

Conread position: 582-840
Cow position: chr28:26006780-26006520 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 187
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 104, 145

Conread position: 584-1133
Cow position: chr28:25784831-25784284 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 352
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 95, 143

Conread position: 691-1146
Cow position: chr28:25706019-25706476 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 132

Conread position: 735-1140
Cow position: chr28:34084434-34084831 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 270
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 18, 52

Conread position: 747-1149
Cow position: chr28:2925121-2924731 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 275
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 101, 47

Conread position: 784-1091
Cow position: chr28:7791619-7791924 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 215
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 240, 74

Conread position: 798-1094
Cow position: chr28:12246461-12246153 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 206
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 43, 19

Conread position: 823-1010
Cow position: chr28:2990869-2991053 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 137
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 12, 82

Conread position: 903-1146
Cow position: chr28:10293141-10292895 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 169
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 123, 226

Conread position: 912-1144
Cow position: chr28:5823032-5822800 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 171
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 99, 50

Conread position: 917-1140
Cow position: chr28:21928411-21928185 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 173
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 94, 20

Conread position: 918-1140
Cow position: chr28:26006412-26006186 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 161
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 11, 5

Conread position: 926-1146
Cow position: chr28:15680967-15680739 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 155
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 78, 0

Conread position: 927-1149
Cow position: chr28:4384329-4384557 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 157
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 79, 144

Show alignments to all cow chromosomes.