Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01E040098.5 |
| Conread position: | 1-125 |
| Cow position: | |
| Alignm length: | 129 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1-154 |
| Cow position: | |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 131, 30 |
| Conread position: | 1-197 |
| Cow position: | |
| Alignm length: | 199 |
| Alignm identity: | 160 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 51, 9 |
| Conread position: | 1-270 |
| Cow position: | |
| Alignm length: | 277 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 155 |
| Conread position: | 1-347 |
| Cow position: | |
| Alignm length: | 351 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 109 |
| Conread position: | 1-585 |
| Cow position: | |
| Alignm length: | 600 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 71 |
| Conread position: | 1-715 |
| Cow position: | |
| Alignm length: | 730 |
| Alignm identity: | 541 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 45 |
| Conread position: | 1-720 |
| Cow position: | |
| Alignm length: | 751 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 153 |
| Conread position: | 1-763 |
| Cow position: | |
| Alignm length: | 803 |
| Alignm identity: | 528 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 99 |
| Conread position: | 1-835 |
| Cow position: | |
| Alignm length: | 862 |
| Alignm identity: | 625 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 22 |
| Conread position: | 1-889 |
| Cow position: | |
| Alignm length: | 928 |
| Alignm identity: | 593 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 55 |
| Conread position: | 1-889 |
| Cow position: | |
| Alignm length: | 928 |
| Alignm identity: | 593 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 153 |
| Conread position: | 1-891 |
| Cow position: | |
| Alignm length: | 897 |
| Alignm identity: | 638 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 54 |
| Conread position: | 1-1138 |
| Cow position: | |
| Alignm length: | 1158 |
| Alignm identity: | 877 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 383, 54 |
| Conread position: | 1-1149 |
| Cow position: | |
| Alignm length: | 1184 |
| Alignm identity: | 797 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 465, 51 |
| Conread position: | 2-232 |
| Cow position: | |
| Alignm length: | 231 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 2-475 |
| Cow position: | |
| Alignm length: | 482 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 152 |
| Conread position: | 2-503 |
| Cow position: | |
| Alignm length: | 508 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 149 |
| Conread position: | 2-503 |
| Cow position: | |
| Alignm length: | 509 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 151 |
| Conread position: | 2-530 |
| Cow position: | |
| Alignm length: | 535 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 125 |
| Conread position: | 2-538 |
| Cow position: | |
| Alignm length: | 547 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 145 |
| Conread position: | 2-578 |
| Cow position: | |
| Alignm length: | 585 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 369, 60 |
| Conread position: | 2-600 |
| Cow position: | |
| Alignm length: | 612 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 152 |
| Conread position: | 2-614 |
| Cow position: | |
| Alignm length: | 630 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 24 |
| Conread position: | 2-616 |
| Cow position: | |
| Alignm length: | 629 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 144 |
| Conread position: | 2-632 |
| Cow position: | |
| Alignm length: | 642 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 82 |
| Conread position: | 2-633 |
| Cow position: | |
| Alignm length: | 664 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 152 |
| Conread position: | 2-634 |
| Cow position: | |
| Alignm length: | 652 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 152 |
| Conread position: | 2-634 |
| Cow position: | |
| Alignm length: | 645 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 150 |
| Conread position: | 2-634 |
| Cow position: | |
| Alignm length: | 653 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 152 |
| Conread position: | 2-889 |
| Cow position: | |
| Alignm length: | 921 |
| Alignm identity: | 558 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 375 |
| Conread position: | 2-1146 |
| Cow position: | |
| Alignm length: | 1171 |
| Alignm identity: | 886 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 142 |
| Conread position: | 3-532 |
| Cow position: | |
| Alignm length: | 538 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 151 |
| Conread position: | 3-627 |
| Cow position: | |
| Alignm length: | 638 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 69 |
| Conread position: | 3-887 |
| Cow position: | |
| Alignm length: | 901 |
| Alignm identity: | 643 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 67 |
| Conread position: | 6-503 |
| Cow position: | |
| Alignm length: | 506 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 148 |
| Conread position: | 7-248 |
| Cow position: | |
| Alignm length: | 249 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 43, 147 |
| Conread position: | 10-375 |
| Cow position: | |
| Alignm length: | 372 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 165, 129 |
| Conread position: | 11-265 |
| Cow position: | |
| Alignm length: | 267 |
| Alignm identity: | 197 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 41, 80 |
| Conread position: | 11-266 |
| Cow position: | |
| Alignm length: | 260 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 74 |
| Conread position: | 11-329 |
| Cow position: | |
| Alignm length: | 321 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 299, 131 |
| Conread position: | 11-370 |
| Cow position: | |
| Alignm length: | 365 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 136 |
| Conread position: | 11-440 |
| Cow position: | |
| Alignm length: | 438 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 39, 136 |
| Conread position: | 11-522 |
| Cow position: | |
| Alignm length: | 517 |
| Alignm identity: | 325 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 36, 132 |
| Conread position: | 11-525 |
| Cow position: | |
| Alignm length: | 526 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 143 |
| Conread position: | 11-591 |
| Cow position: | |
| Alignm length: | 586 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 74 |
| Conread position: | 11-614 |
| Cow position: | |
| Alignm length: | 618 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 433, 56 |
| Conread position: | 11-614 |
| Cow position: | |
| Alignm length: | 620 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 143 |
| Conread position: | 11-631 |
| Cow position: | |
| Alignm length: | 628 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 134 |
| Conread position: | 11-634 |
| Cow position: | |
| Alignm length: | 649 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 73 |
| Conread position: | 12-501 |
| Cow position: | |
| Alignm length: | 499 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 142 |
| Conread position: | 16-546 |
| Cow position: | |
| Alignm length: | 537 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 64 |
| Conread position: | 26-497 |
| Cow position: | |
| Alignm length: | 477 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 68 |
| Conread position: | 55-330 |
| Cow position: | |
| Alignm length: | 276 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 68-633 |
| Cow position: | |
| Alignm length: | 579 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 380, 73 |
| Conread position: | 100-911 |
| Cow position: | |
| Alignm length: | 848 |
| Alignm identity: | 531 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 50 |
| Conread position: | 101-753 |
| Cow position: | |
| Alignm length: | 669 |
| Alignm identity: | 496 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 263, 49 |
| Conread position: | 111-525 |
| Cow position: | |
| Alignm length: | 435 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 39 |
| Conread position: | 114-264 |
| Cow position: | |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 114-525 |
| Cow position: | |
| Alignm length: | 420 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 36 |
| Conread position: | 114-612 |
| Cow position: | |
| Alignm length: | 503 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 442, 39 |
| Conread position: | 114-811 |
| Cow position: | |
| Alignm length: | 718 |
| Alignm identity: | 523 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 36 |
| Conread position: | 119-634 |
| Cow position: | |
| Alignm length: | 533 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 329, 31 |
| Conread position: | 120-518 |
| Cow position: | |
| Alignm length: | 403 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 328, 30 |
| Conread position: | 127-634 |
| Cow position: | |
| Alignm length: | 525 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 321, 24 |
| Conread position: | 130-1113 |
| Cow position: | |
| Alignm length: | 1004 |
| Alignm identity: | 739 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 335, 20 |
| Conread position: | 135-474 |
| Cow position: | |
| Alignm length: | 340 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 135, 0 |
| Conread position: | 137-567 |
| Cow position: | |
| Alignm length: | 436 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 311, 210 |
| Conread position: | 138-543 |
| Cow position: | |
| Alignm length: | 412 |
| Alignm identity: | 271 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 10, 133 |
| Conread position: | 156-518 |
| Cow position: | |
| Alignm length: | 369 |
| Alignm identity: | 250 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 301, 92 |
| Conread position: | 219-456 |
| Cow position: | |
| Alignm length: | 250 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 129, 74 |
| Conread position: | 237-889 |
| Cow position: | |
| Alignm length: | 672 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 33 |
| Conread position: | 277-631 |
| Cow position: | |
| Alignm length: | 370 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 90 |
| Conread position: | 293-629 |
| Cow position: | |
| Alignm length: | 346 |
| Alignm identity: | 227 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 177, 56 |
| Conread position: | 302-829 |
| Cow position: | |
| Alignm length: | 545 |
| Alignm identity: | 341 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 15, 303 |
| Conread position: | 383-585 |
| Cow position: | |
| Alignm length: | 211 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 553-1146 |
| Cow position: | |
| Alignm length: | 622 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 148 |
| Conread position: | 563-706 |
| Cow position: | |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 24, 141 |
| Conread position: | 582-840 |
| Cow position: | |
| Alignm length: | 262 |
| Alignm identity: | 187 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 104, 145 |
| Conread position: | 584-1133 |
| Cow position: | |
| Alignm length: | 563 |
| Alignm identity: | 352 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 95, 143 |
| Conread position: | 691-1146 |
| Cow position: | |
| Alignm length: | 463 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 132 |
| Conread position: | 735-1140 |
| Cow position: | |
| Alignm length: | 411 |
| Alignm identity: | 270 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 18, 52 |
| Conread position: | 747-1149 |
| Cow position: | |
| Alignm length: | 408 |
| Alignm identity: | 275 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 101, 47 |
| Conread position: | 784-1091 |
| Cow position: | |
| Alignm length: | 311 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 240, 74 |
| Conread position: | 798-1094 |
| Cow position: | |
| Alignm length: | 311 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 43, 19 |
| Conread position: | 823-1010 |
| Cow position: | |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 12, 82 |
| Conread position: | 903-1146 |
| Cow position: | |
| Alignm length: | 249 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 123, 226 |
| Conread position: | 912-1144 |
| Cow position: | |
| Alignm length: | 239 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 99, 50 |
| Conread position: | 917-1140 |
| Cow position: | |
| Alignm length: | 232 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 94, 20 |
| Conread position: | 918-1140 |
| Cow position: | |
| Alignm length: | 232 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 11, 5 |
| Conread position: | 926-1146 |
| Cow position: | |
| Alignm length: | 229 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 927-1149 |
| Cow position: | |
| Alignm length: | 231 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 79, 144 |
Show alignments to all cow chromosomes.