Cow genome map

Conread name: Ss1.1-Tra1-TCH01E040098.5

Conread position: 1-158
Cow position: chr29:34609087-34609242 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 122
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 68, 76

Conread position: 1-162
Cow position: chr29:21427190-21427356 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 124
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 51, 0

Conread position: 1-270
Cow position: chr29:12796601-12796869 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 119

Conread position: 1-270
Cow position: chr29:16769997-16769730 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 153

Conread position: 1-270
Cow position: chr29:21543500-21543778 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 161

Conread position: 1-277
Cow position: chr29:14013337-14013059 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 190
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 61, 130

Conread position: 1-277
Cow position: chr29:14073074-14073354 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 193
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 61, 130

Conread position: 1-288
Cow position: chr29:43366132-43366415 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 138

Conread position: 1-291
Cow position: chr29:10848246-10848531 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 226
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 51, 161

Conread position: 1-338
Cow position: chr29:31121670-31121335 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 238
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 49, 109

Conread position: 1-369
Cow position: chr29:28060801-28061171 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 146

Conread position: 1-447
Cow position: chr29:30108963-30108538 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 288
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 42, 64

Conread position: 1-482
Cow position: chr29:15950319-15950783 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 90

Conread position: 1-512
Cow position: chr29:32891076-32890569 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 340
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 129, 329

Conread position: 1-515
Cow position: chr29:104438-103940 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 80

Conread position: 1-555
Cow position: chr29:16109594-16109012 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 175

Conread position: 1-627
Cow position: chr29:11049147-11048530 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 136

Conread position: 1-654
Cow position: chr29:5957467-5956796 (view UCSC Genome Browser custom track)
Alignm length: 677
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 152

Conread position: 1-657
Cow position: chr29:35196537-35195922 (view UCSC Genome Browser custom track)
Alignm length: 669
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 23

Conread position: 1-742
Cow position: chr29:32315905-32315134 (view UCSC Genome Browser custom track)
Alignm length: 778
Alignm identity: 524
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 153

Conread position: 1-749
Cow position: chr29:15969286-15970057 (view UCSC Genome Browser custom track)
Alignm length: 778
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 33

Conread position: 1-840
Cow position: chr29:15894986-15895853 (view UCSC Genome Browser custom track)
Alignm length: 876
Alignm identity: 556
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 150

Conread position: 1-889
Cow position: chr29:13578283-13577371 (view UCSC Genome Browser custom track)
Alignm length: 928
Alignm identity: 600
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 130

Conread position: 1-889
Cow position: chr29:27250470-27251390 (view UCSC Genome Browser custom track)
Alignm length: 929
Alignm identity: 599
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 153

Conread position: 1-890
Cow position: chr29:610746-611662 (view UCSC Genome Browser custom track)
Alignm length: 922
Alignm identity: 600
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 174

Conread position: 1-966
Cow position: chr29:2750527-2751472 (view UCSC Genome Browser custom track)
Alignm length: 977
Alignm identity: 703
Alignm E-value: 0
Alignm gaps (pig, cow): 465, 61

Conread position: 2-262
Cow position: chr29:7840660-7840400 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 189
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 62, 152

Conread position: 2-475
Cow position: chr29:23975700-23975230 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 156

Conread position: 2-503
Cow position: chr29:2099708-2099215 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 143

Conread position: 2-503
Cow position: chr29:6266630-6267124 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 128

Conread position: 2-503
Cow position: chr29:20251023-20250528 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 152

Conread position: 2-515
Cow position: chr29:39079842-39080350 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 152

Conread position: 2-525
Cow position: chr29:21246433-21245918 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 153

Conread position: 2-580
Cow position: chr29:34799946-34800503 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 114

Conread position: 2-603
Cow position: chr29:2841505-2842091 (view UCSC Genome Browser custom track)
Alignm length: 614
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 454, 148

Conread position: 2-603
Cow position: chr29:19623383-19623983 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 149

Conread position: 2-603
Cow position: chr29:43322423-43321815 (view UCSC Genome Browser custom track)
Alignm length: 617
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 152

Conread position: 2-613
Cow position: chr29:2689766-2689183 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 142

Conread position: 2-613
Cow position: chr29:16022393-16021784 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 41

Conread position: 2-614
Cow position: chr29:10648384-10648996 (view UCSC Genome Browser custom track)
Alignm length: 629
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 147

Conread position: 2-614
Cow position: chr29:26164959-26165565 (view UCSC Genome Browser custom track)
Alignm length: 629
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 144

Conread position: 2-632
Cow position: chr29:25932680-25933295 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 152

Conread position: 2-634
Cow position: chr29:48612-49253 (view UCSC Genome Browser custom track)
Alignm length: 658
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 152

Conread position: 2-634
Cow position: chr29:7431352-7431987 (view UCSC Genome Browser custom track)
Alignm length: 652
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 152

Conread position: 2-634
Cow position: chr29:10824092-10824724 (view UCSC Genome Browser custom track)
Alignm length: 653
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 154

Conread position: 2-634
Cow position: chr29:19652972-19652339 (view UCSC Genome Browser custom track)
Alignm length: 650
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 152

Conread position: 2-634
Cow position: chr29:40503115-40503746 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 152

Conread position: 2-634
Cow position: chr29:45459580-45458956 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 149

Conread position: 7-339
Cow position: chr29:19893624-19893295 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 213
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 41, 161

Conread position: 10-291
Cow position: chr29:10844138-10843865 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 188
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 47, 36

Conread position: 10-417
Cow position: chr29:36599460-36599870 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 264
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 163, 21

Conread position: 10-522
Cow position: chr29:803469-803977 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 75

Conread position: 11-175
Cow position: chr29:13853167-13853335 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 133
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 50, 15

Conread position: 11-323
Cow position: chr29:9643869-9644180 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 140

Conread position: 11-330
Cow position: chr29:4635112-4635426 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 216
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 38, 97

Conread position: 11-535
Cow position: chr29:30811387-30810899 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 103

Conread position: 11-888
Cow position: chr29:35296729-35295845 (view UCSC Genome Browser custom track)
Alignm length: 892
Alignm identity: 550
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 45

Conread position: 12-634
Cow position: chr29:32539664-32539056 (view UCSC Genome Browser custom track)
Alignm length: 631
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 142

Conread position: 13-631
Cow position: chr29:27040911-27041499 (view UCSC Genome Browser custom track)
Alignm length: 625
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 137

Conread position: 48-347
Cow position: chr29:14368762-14368463 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 208
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 9, 96

Conread position: 55-614
Cow position: chr29:38226800-38226242 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 373, 32

Conread position: 55-615
Cow position: chr29:45587491-45588047 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 393, 95

Conread position: 73-515
Cow position: chr29:34751904-34752315 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 297
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 77, 0

Conread position: 142-585
Cow position: chr29:21431616-21432067 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 275

Conread position: 154-671
Cow position: chr29:8663987-8663479 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 348, 139

Conread position: 170-889
Cow position: chr29:18857092-18857843 (view UCSC Genome Browser custom track)
Alignm length: 757
Alignm identity: 459
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 95, 455

Conread position: 176-707
Cow position: chr29:42650051-42649518 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 289, 117

Conread position: 176-707
Cow position: chr29:42801911-42801378 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 289, 117

Conread position: 218-633
Cow position: chr29:16769803-16769401 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 288
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 18, 37

Conread position: 241-515
Cow position: chr29:45464148-45464419 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 49

Conread position: 263-633
Cow position: chr29:10848482-10848860 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 253

Conread position: 298-738
Cow position: chr29:31121340-31120888 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 284
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 19, 307

Conread position: 300-632
Cow position: chr29:34622493-34622809 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 228
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 113, 49

Conread position: 300-633
Cow position: chr29:22318371-22318715 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 154

Conread position: 306-889
Cow position: chr29:670181-670773 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 334
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 161, 503

Conread position: 352-889
Cow position: chr29:19884743-19884185 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 355
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 106, 85

Conread position: 353-911
Cow position: chr29:40468276-40467708 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 348
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 114, 131

Conread position: 359-634
Cow position: chr29:15984723-15984438 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 189
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 74, 0

Conread position: 369-911
Cow position: chr29:32560580-32561131 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 341
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 98, 428

Conread position: 384-631
Cow position: chr29:43366696-43366946 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 175
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 83, 144

Conread position: 468-911
Cow position: chr29:34925229-34924779 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 272
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 80, 30

Conread position: 545-748
Cow position: chr29:45465035-45465242 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 158
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 16, 73

Conread position: 547-1149
Cow position: chr29:103355-102736 (view UCSC Genome Browser custom track)
Alignm length: 627
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 173

Conread position: 548-837
Cow position: chr29:34752931-34753226 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 196
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 13, 245

Conread position: 735-1136
Cow position: chr29:15288580-15288163 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 279
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 20, 181

Conread position: 808-1145
Cow position: chr29:8660327-8659990 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 96

Conread position: 850-1138
Cow position: chr29:27263465-27263757 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 193
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 163, 54

Show alignments to all cow chromosomes.