Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01E040098.5 |
| Conread position: | 1-158 |
| Cow position: | |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 68, 76 |
| Conread position: | 1-162 |
| Cow position: | |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1-270 |
| Cow position: | |
| Alignm length: | 273 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 119 |
| Conread position: | 1-270 |
| Cow position: | |
| Alignm length: | 274 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 153 |
| Conread position: | 1-270 |
| Cow position: | |
| Alignm length: | 284 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 161 |
| Conread position: | 1-277 |
| Cow position: | |
| Alignm length: | 282 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 61, 130 |
| Conread position: | 1-277 |
| Cow position: | |
| Alignm length: | 284 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 61, 130 |
| Conread position: | 1-288 |
| Cow position: | |
| Alignm length: | 292 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 138 |
| Conread position: | 1-291 |
| Cow position: | |
| Alignm length: | 301 |
| Alignm identity: | 226 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 51, 161 |
| Conread position: | 1-338 |
| Cow position: | |
| Alignm length: | 343 |
| Alignm identity: | 238 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 49, 109 |
| Conread position: | 1-369 |
| Cow position: | |
| Alignm length: | 373 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 146 |
| Conread position: | 1-447 |
| Cow position: | |
| Alignm length: | 449 |
| Alignm identity: | 288 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 42, 64 |
| Conread position: | 1-482 |
| Cow position: | |
| Alignm length: | 487 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 90 |
| Conread position: | 1-512 |
| Cow position: | |
| Alignm length: | 525 |
| Alignm identity: | 340 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 129, 329 |
| Conread position: | 1-515 |
| Cow position: | |
| Alignm length: | 522 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 80 |
| Conread position: | 1-555 |
| Cow position: | |
| Alignm length: | 584 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 175 |
| Conread position: | 1-627 |
| Cow position: | |
| Alignm length: | 643 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 136 |
| Conread position: | 1-654 |
| Cow position: | |
| Alignm length: | 677 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 152 |
| Conread position: | 1-657 |
| Cow position: | |
| Alignm length: | 669 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 23 |
| Conread position: | 1-742 |
| Cow position: | |
| Alignm length: | 778 |
| Alignm identity: | 524 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 153 |
| Conread position: | 1-749 |
| Cow position: | |
| Alignm length: | 778 |
| Alignm identity: | 482 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 33 |
| Conread position: | 1-840 |
| Cow position: | |
| Alignm length: | 876 |
| Alignm identity: | 556 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 150 |
| Conread position: | 1-889 |
| Cow position: | |
| Alignm length: | 928 |
| Alignm identity: | 600 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 130 |
| Conread position: | 1-889 |
| Cow position: | |
| Alignm length: | 929 |
| Alignm identity: | 599 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 153 |
| Conread position: | 1-890 |
| Cow position: | |
| Alignm length: | 922 |
| Alignm identity: | 600 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 174 |
| Conread position: | 1-966 |
| Cow position: | |
| Alignm length: | 977 |
| Alignm identity: | 703 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 465, 61 |
| Conread position: | 2-262 |
| Cow position: | |
| Alignm length: | 265 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 62, 152 |
| Conread position: | 2-475 |
| Cow position: | |
| Alignm length: | 486 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 156 |
| Conread position: | 2-503 |
| Cow position: | |
| Alignm length: | 512 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 143 |
| Conread position: | 2-503 |
| Cow position: | |
| Alignm length: | 510 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 128 |
| Conread position: | 2-503 |
| Cow position: | |
| Alignm length: | 510 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 152 |
| Conread position: | 2-515 |
| Cow position: | |
| Alignm length: | 523 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 152 |
| Conread position: | 2-525 |
| Cow position: | |
| Alignm length: | 535 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 153 |
| Conread position: | 2-580 |
| Cow position: | |
| Alignm length: | 593 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 114 |
| Conread position: | 2-603 |
| Cow position: | |
| Alignm length: | 614 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 454, 148 |
| Conread position: | 2-603 |
| Cow position: | |
| Alignm length: | 618 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 149 |
| Conread position: | 2-603 |
| Cow position: | |
| Alignm length: | 617 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 152 |
| Conread position: | 2-613 |
| Cow position: | |
| Alignm length: | 622 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 142 |
| Conread position: | 2-613 |
| Cow position: | |
| Alignm length: | 641 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 41 |
| Conread position: | 2-614 |
| Cow position: | |
| Alignm length: | 629 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 147 |
| Conread position: | 2-614 |
| Cow position: | |
| Alignm length: | 629 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 144 |
| Conread position: | 2-632 |
| Cow position: | |
| Alignm length: | 639 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 152 |
| Conread position: | 2-634 |
| Cow position: | |
| Alignm length: | 658 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 152 |
| Conread position: | 2-634 |
| Cow position: | |
| Alignm length: | 652 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 152 |
| Conread position: | 2-634 |
| Cow position: | |
| Alignm length: | 653 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 154 |
| Conread position: | 2-634 |
| Cow position: | |
| Alignm length: | 650 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 152 |
| Conread position: | 2-634 |
| Cow position: | |
| Alignm length: | 648 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 152 |
| Conread position: | 2-634 |
| Cow position: | |
| Alignm length: | 646 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 149 |
| Conread position: | 7-339 |
| Cow position: | |
| Alignm length: | 338 |
| Alignm identity: | 213 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 41, 161 |
| Conread position: | 10-291 |
| Cow position: | |
| Alignm length: | 284 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 47, 36 |
| Conread position: | 10-417 |
| Cow position: | |
| Alignm length: | 420 |
| Alignm identity: | 264 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 163, 21 |
| Conread position: | 10-522 |
| Cow position: | |
| Alignm length: | 528 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 75 |
| Conread position: | 11-175 |
| Cow position: | |
| Alignm length: | 171 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 50, 15 |
| Conread position: | 11-323 |
| Cow position: | |
| Alignm length: | 314 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 140 |
| Conread position: | 11-330 |
| Cow position: | |
| Alignm length: | 324 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 38, 97 |
| Conread position: | 11-535 |
| Cow position: | |
| Alignm length: | 526 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 103 |
| Conread position: | 11-888 |
| Cow position: | |
| Alignm length: | 892 |
| Alignm identity: | 550 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 45 |
| Conread position: | 12-634 |
| Cow position: | |
| Alignm length: | 631 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 142 |
| Conread position: | 13-631 |
| Cow position: | |
| Alignm length: | 625 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 137 |
| Conread position: | 48-347 |
| Cow position: | |
| Alignm length: | 302 |
| Alignm identity: | 208 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 9, 96 |
| Conread position: | 55-614 |
| Cow position: | |
| Alignm length: | 577 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 373, 32 |
| Conread position: | 55-615 |
| Cow position: | |
| Alignm length: | 573 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 393, 95 |
| Conread position: | 73-515 |
| Cow position: | |
| Alignm length: | 443 |
| Alignm identity: | 297 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 142-585 |
| Cow position: | |
| Alignm length: | 454 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 275 |
| Conread position: | 154-671 |
| Cow position: | |
| Alignm length: | 527 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 348, 139 |
| Conread position: | 170-889 |
| Cow position: | |
| Alignm length: | 757 |
| Alignm identity: | 459 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 95, 455 |
| Conread position: | 176-707 |
| Cow position: | |
| Alignm length: | 544 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 289, 117 |
| Conread position: | 176-707 |
| Cow position: | |
| Alignm length: | 544 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 289, 117 |
| Conread position: | 218-633 |
| Cow position: | |
| Alignm length: | 423 |
| Alignm identity: | 288 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 18, 37 |
| Conread position: | 241-515 |
| Cow position: | |
| Alignm length: | 280 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 49 |
| Conread position: | 263-633 |
| Cow position: | |
| Alignm length: | 383 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 253 |
| Conread position: | 298-738 |
| Cow position: | |
| Alignm length: | 455 |
| Alignm identity: | 284 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 19, 307 |
| Conread position: | 300-632 |
| Cow position: | |
| Alignm length: | 337 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 113, 49 |
| Conread position: | 300-633 |
| Cow position: | |
| Alignm length: | 346 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 154 |
| Conread position: | 306-889 |
| Cow position: | |
| Alignm length: | 597 |
| Alignm identity: | 334 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 161, 503 |
| Conread position: | 352-889 |
| Cow position: | |
| Alignm length: | 563 |
| Alignm identity: | 355 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 106, 85 |
| Conread position: | 353-911 |
| Cow position: | |
| Alignm length: | 574 |
| Alignm identity: | 348 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 114, 131 |
| Conread position: | 359-634 |
| Cow position: | |
| Alignm length: | 286 |
| Alignm identity: | 189 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 369-911 |
| Cow position: | |
| Alignm length: | 557 |
| Alignm identity: | 341 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 98, 428 |
| Conread position: | 384-631 |
| Cow position: | |
| Alignm length: | 253 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 83, 144 |
| Conread position: | 468-911 |
| Cow position: | |
| Alignm length: | 455 |
| Alignm identity: | 272 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 80, 30 |
| Conread position: | 545-748 |
| Cow position: | |
| Alignm length: | 211 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 16, 73 |
| Conread position: | 547-1149 |
| Cow position: | |
| Alignm length: | 627 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 173 |
| Conread position: | 548-837 |
| Cow position: | |
| Alignm length: | 298 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 13, 245 |
| Conread position: | 735-1136 |
| Cow position: | |
| Alignm length: | 422 |
| Alignm identity: | 279 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 20, 181 |
| Conread position: | 808-1145 |
| Cow position: | |
| Alignm length: | 344 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 96 |
| Conread position: | 850-1138 |
| Cow position: | |
| Alignm length: | 298 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 163, 54 |
Show alignments to all cow chromosomes.