Cow genome map
Conread name: | Ss1.1-Tra1-TCH01E040098.5 |
Conread position: | 1-158 |
Cow position: | chr29:34609087-34609242 (view UCSC Genome Browser custom track) |
Alignm length: | 161 |
Alignm identity: | 122 |
Alignm E-value: | 7e-24 |
Alignm gaps (pig, cow): | 68, 76 |
Conread position: | 1-162 |
Cow position: | chr29:21427190-21427356 (view UCSC Genome Browser custom track) |
Alignm length: | 167 |
Alignm identity: | 124 |
Alignm E-value: | 8e-25 |
Alignm gaps (pig, cow): | 51, 0 |
Conread position: | 1-270 |
Cow position: | chr29:12796601-12796869 (view UCSC Genome Browser custom track) |
Alignm length: | 273 |
Alignm identity: | 218 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 48, 119 |
Conread position: | 1-270 |
Cow position: | chr29:16769997-16769730 (view UCSC Genome Browser custom track) |
Alignm length: | 274 |
Alignm identity: | 205 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 64, 153 |
Conread position: | 1-270 |
Cow position: | chr29:21543500-21543778 (view UCSC Genome Browser custom track) |
Alignm length: | 284 |
Alignm identity: | 215 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 13, 161 |
Conread position: | 1-277 |
Cow position: | chr29:14013337-14013059 (view UCSC Genome Browser custom track) |
Alignm length: | 282 |
Alignm identity: | 190 |
Alignm E-value: | 2e-31 |
Alignm gaps (pig, cow): | 61, 130 |
Conread position: | 1-277 |
Cow position: | chr29:14073074-14073354 (view UCSC Genome Browser custom track) |
Alignm length: | 284 |
Alignm identity: | 193 |
Alignm E-value: | 2e-31 |
Alignm gaps (pig, cow): | 61, 130 |
Conread position: | 1-288 |
Cow position: | chr29:43366132-43366415 (view UCSC Genome Browser custom track) |
Alignm length: | 292 |
Alignm identity: | 213 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 60, 138 |
Conread position: | 1-291 |
Cow position: | chr29:10848246-10848531 (view UCSC Genome Browser custom track) |
Alignm length: | 301 |
Alignm identity: | 226 |
Alignm E-value: | 1.96182e-44 |
Alignm gaps (pig, cow): | 51, 161 |
Conread position: | 1-338 |
Cow position: | chr29:31121670-31121335 (view UCSC Genome Browser custom track) |
Alignm length: | 343 |
Alignm identity: | 238 |
Alignm E-value: | 6.02558e-44 |
Alignm gaps (pig, cow): | 49, 109 |
Conread position: | 1-369 |
Cow position: | chr29:28060801-28061171 (view UCSC Genome Browser custom track) |
Alignm length: | 373 |
Alignm identity: | 261 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 146 |
Conread position: | 1-447 |
Cow position: | chr29:30108963-30108538 (view UCSC Genome Browser custom track) |
Alignm length: | 449 |
Alignm identity: | 288 |
Alignm E-value: | 4e-30 |
Alignm gaps (pig, cow): | 42, 64 |
Conread position: | 1-482 |
Cow position: | chr29:15950319-15950783 (view UCSC Genome Browser custom track) |
Alignm length: | 487 |
Alignm identity: | 336 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 275, 90 |
Conread position: | 1-512 |
Cow position: | chr29:32891076-32890569 (view UCSC Genome Browser custom track) |
Alignm length: | 525 |
Alignm identity: | 340 |
Alignm E-value: | 2.00386e-43 |
Alignm gaps (pig, cow): | 129, 329 |
Conread position: | 1-515 |
Cow position: | chr29:104438-103940 (view UCSC Genome Browser custom track) |
Alignm length: | 522 |
Alignm identity: | 369 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 80 |
Conread position: | 1-555 |
Cow position: | chr29:16109594-16109012 (view UCSC Genome Browser custom track) |
Alignm length: | 584 |
Alignm identity: | 381 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 175 |
Conread position: | 1-627 |
Cow position: | chr29:11049147-11048530 (view UCSC Genome Browser custom track) |
Alignm length: | 643 |
Alignm identity: | 455 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 136 |
Conread position: | 1-654 |
Cow position: | chr29:5957467-5956796 (view UCSC Genome Browser custom track) |
Alignm length: | 677 |
Alignm identity: | 451 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 50, 152 |
Conread position: | 1-657 |
Cow position: | chr29:35196537-35195922 (view UCSC Genome Browser custom track) |
Alignm length: | 669 |
Alignm identity: | 446 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 85, 23 |
Conread position: | 1-742 |
Cow position: | chr29:32315905-32315134 (view UCSC Genome Browser custom track) |
Alignm length: | 778 |
Alignm identity: | 524 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 153 |
Conread position: | 1-749 |
Cow position: | chr29:15969286-15970057 (view UCSC Genome Browser custom track) |
Alignm length: | 778 |
Alignm identity: | 482 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 33 |
Conread position: | 1-840 |
Cow position: | chr29:15894986-15895853 (view UCSC Genome Browser custom track) |
Alignm length: | 876 |
Alignm identity: | 556 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 63, 150 |
Conread position: | 1-889 |
Cow position: | chr29:13578283-13577371 (view UCSC Genome Browser custom track) |
Alignm length: | 928 |
Alignm identity: | 600 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 29, 130 |
Conread position: | 1-889 |
Cow position: | chr29:27250470-27251390 (view UCSC Genome Browser custom track) |
Alignm length: | 929 |
Alignm identity: | 599 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 153 |
Conread position: | 1-890 |
Cow position: | chr29:610746-611662 (view UCSC Genome Browser custom track) |
Alignm length: | 922 |
Alignm identity: | 600 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 13, 174 |
Conread position: | 1-966 |
Cow position: | chr29:2750527-2751472 (view UCSC Genome Browser custom track) |
Alignm length: | 977 |
Alignm identity: | 703 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 465, 61 |
Conread position: | 2-262 |
Cow position: | chr29:7840660-7840400 (view UCSC Genome Browser custom track) |
Alignm length: | 265 |
Alignm identity: | 189 |
Alignm E-value: | 3e-38 |
Alignm gaps (pig, cow): | 62, 152 |
Conread position: | 2-475 |
Cow position: | chr29:23975700-23975230 (view UCSC Genome Browser custom track) |
Alignm length: | 486 |
Alignm identity: | 349 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 63, 156 |
Conread position: | 2-503 |
Cow position: | chr29:2099708-2099215 (view UCSC Genome Browser custom track) |
Alignm length: | 512 |
Alignm identity: | 370 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 143 |
Conread position: | 2-503 |
Cow position: | chr29:6266630-6267124 (view UCSC Genome Browser custom track) |
Alignm length: | 510 |
Alignm identity: | 364 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 128 |
Conread position: | 2-503 |
Cow position: | chr29:20251023-20250528 (view UCSC Genome Browser custom track) |
Alignm length: | 510 |
Alignm identity: | 351 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 152 |
Conread position: | 2-515 |
Cow position: | chr29:39079842-39080350 (view UCSC Genome Browser custom track) |
Alignm length: | 523 |
Alignm identity: | 366 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 152 |
Conread position: | 2-525 |
Cow position: | chr29:21246433-21245918 (view UCSC Genome Browser custom track) |
Alignm length: | 535 |
Alignm identity: | 370 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 44, 153 |
Conread position: | 2-580 |
Cow position: | chr29:34799946-34800503 (view UCSC Genome Browser custom track) |
Alignm length: | 593 |
Alignm identity: | 402 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 62, 114 |
Conread position: | 2-603 |
Cow position: | chr29:2841505-2842091 (view UCSC Genome Browser custom track) |
Alignm length: | 614 |
Alignm identity: | 427 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 454, 148 |
Conread position: | 2-603 |
Cow position: | chr29:19623383-19623983 (view UCSC Genome Browser custom track) |
Alignm length: | 618 |
Alignm identity: | 433 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 62, 149 |
Conread position: | 2-603 |
Cow position: | chr29:43322423-43321815 (view UCSC Genome Browser custom track) |
Alignm length: | 617 |
Alignm identity: | 430 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 152 |
Conread position: | 2-613 |
Cow position: | chr29:2689766-2689183 (view UCSC Genome Browser custom track) |
Alignm length: | 622 |
Alignm identity: | 425 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 60, 142 |
Conread position: | 2-613 |
Cow position: | chr29:16022393-16021784 (view UCSC Genome Browser custom track) |
Alignm length: | 641 |
Alignm identity: | 424 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 62, 41 |
Conread position: | 2-614 |
Cow position: | chr29:10648384-10648996 (view UCSC Genome Browser custom track) |
Alignm length: | 629 |
Alignm identity: | 422 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 62, 147 |
Conread position: | 2-614 |
Cow position: | chr29:26164959-26165565 (view UCSC Genome Browser custom track) |
Alignm length: | 629 |
Alignm identity: | 439 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 144 |
Conread position: | 2-632 |
Cow position: | chr29:25932680-25933295 (view UCSC Genome Browser custom track) |
Alignm length: | 639 |
Alignm identity: | 444 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 152 |
Conread position: | 2-634 |
Cow position: | chr29:48612-49253 (view UCSC Genome Browser custom track) |
Alignm length: | 658 |
Alignm identity: | 449 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 152 |
Conread position: | 2-634 |
Cow position: | chr29:7431352-7431987 (view UCSC Genome Browser custom track) |
Alignm length: | 652 |
Alignm identity: | 461 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 152 |
Conread position: | 2-634 |
Cow position: | chr29:10824092-10824724 (view UCSC Genome Browser custom track) |
Alignm length: | 653 |
Alignm identity: | 440 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 154 |
Conread position: | 2-634 |
Cow position: | chr29:19652972-19652339 (view UCSC Genome Browser custom track) |
Alignm length: | 650 |
Alignm identity: | 450 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 152 |
Conread position: | 2-634 |
Cow position: | chr29:40503115-40503746 (view UCSC Genome Browser custom track) |
Alignm length: | 648 |
Alignm identity: | 454 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 152 |
Conread position: | 2-634 |
Cow position: | chr29:45459580-45458956 (view UCSC Genome Browser custom track) |
Alignm length: | 646 |
Alignm identity: | 449 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 62, 149 |
Conread position: | 7-339 |
Cow position: | chr29:19893624-19893295 (view UCSC Genome Browser custom track) |
Alignm length: | 338 |
Alignm identity: | 213 |
Alignm E-value: | 5e-22 |
Alignm gaps (pig, cow): | 41, 161 |
Conread position: | 10-291 |
Cow position: | chr29:10844138-10843865 (view UCSC Genome Browser custom track) |
Alignm length: | 284 |
Alignm identity: | 188 |
Alignm E-value: | 2e-23 |
Alignm gaps (pig, cow): | 47, 36 |
Conread position: | 10-417 |
Cow position: | chr29:36599460-36599870 (view UCSC Genome Browser custom track) |
Alignm length: | 420 |
Alignm identity: | 264 |
Alignm E-value: | 8e-25 |
Alignm gaps (pig, cow): | 163, 21 |
Conread position: | 10-522 |
Cow position: | chr29:803469-803977 (view UCSC Genome Browser custom track) |
Alignm length: | 528 |
Alignm identity: | 354 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 13, 75 |
Conread position: | 11-175 |
Cow position: | chr29:13853167-13853335 (view UCSC Genome Browser custom track) |
Alignm length: | 171 |
Alignm identity: | 133 |
Alignm E-value: | 4e-30 |
Alignm gaps (pig, cow): | 50, 15 |
Conread position: | 11-323 |
Cow position: | chr29:9643869-9644180 (view UCSC Genome Browser custom track) |
Alignm length: | 314 |
Alignm identity: | 242 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 53, 140 |
Conread position: | 11-330 |
Cow position: | chr29:4635112-4635426 (view UCSC Genome Browser custom track) |
Alignm length: | 324 |
Alignm identity: | 216 |
Alignm E-value: | 2e-31 |
Alignm gaps (pig, cow): | 38, 97 |
Conread position: | 11-535 |
Cow position: | chr29:30811387-30810899 (view UCSC Genome Browser custom track) |
Alignm length: | 526 |
Alignm identity: | 359 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 53, 103 |
Conread position: | 11-888 |
Cow position: | chr29:35296729-35295845 (view UCSC Genome Browser custom track) |
Alignm length: | 892 |
Alignm identity: | 550 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 39, 45 |
Conread position: | 12-634 |
Cow position: | chr29:32539664-32539056 (view UCSC Genome Browser custom track) |
Alignm length: | 631 |
Alignm identity: | 429 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 40, 142 |
Conread position: | 13-631 |
Cow position: | chr29:27040911-27041499 (view UCSC Genome Browser custom track) |
Alignm length: | 625 |
Alignm identity: | 446 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 237, 137 |
Conread position: | 48-347 |
Cow position: | chr29:14368762-14368463 (view UCSC Genome Browser custom track) |
Alignm length: | 302 |
Alignm identity: | 208 |
Alignm E-value: | 1.99993e-41 |
Alignm gaps (pig, cow): | 9, 96 |
Conread position: | 55-614 |
Cow position: | chr29:38226800-38226242 (view UCSC Genome Browser custom track) |
Alignm length: | 577 |
Alignm identity: | 404 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 373, 32 |
Conread position: | 55-615 |
Cow position: | chr29:45587491-45588047 (view UCSC Genome Browser custom track) |
Alignm length: | 573 |
Alignm identity: | 408 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 393, 95 |
Conread position: | 73-515 |
Cow position: | chr29:34751904-34752315 (view UCSC Genome Browser custom track) |
Alignm length: | 443 |
Alignm identity: | 297 |
Alignm E-value: | 4.99997e-41 |
Alignm gaps (pig, cow): | 77, 0 |
Conread position: | 142-585 |
Cow position: | chr29:21431616-21432067 (view UCSC Genome Browser custom track) |
Alignm length: | 454 |
Alignm identity: | 333 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 12, 275 |
Conread position: | 154-671 |
Cow position: | chr29:8663987-8663479 (view UCSC Genome Browser custom track) |
Alignm length: | 527 |
Alignm identity: | 405 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 348, 139 |
Conread position: | 170-889 |
Cow position: | chr29:18857092-18857843 (view UCSC Genome Browser custom track) |
Alignm length: | 757 |
Alignm identity: | 459 |
Alignm E-value: | 3e-36 |
Alignm gaps (pig, cow): | 95, 455 |
Conread position: | 176-707 |
Cow position: | chr29:42650051-42649518 (view UCSC Genome Browser custom track) |
Alignm length: | 544 |
Alignm identity: | 364 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 289, 117 |
Conread position: | 176-707 |
Cow position: | chr29:42801911-42801378 (view UCSC Genome Browser custom track) |
Alignm length: | 544 |
Alignm identity: | 363 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 289, 117 |
Conread position: | 218-633 |
Cow position: | chr29:16769803-16769401 (view UCSC Genome Browser custom track) |
Alignm length: | 423 |
Alignm identity: | 288 |
Alignm E-value: | 2.00386e-43 |
Alignm gaps (pig, cow): | 18, 37 |
Conread position: | 241-515 |
Cow position: | chr29:45464148-45464419 (view UCSC Genome Browser custom track) |
Alignm length: | 280 |
Alignm identity: | 208 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 25, 49 |
Conread position: | 263-633 |
Cow position: | chr29:10848482-10848860 (view UCSC Genome Browser custom track) |
Alignm length: | 383 |
Alignm identity: | 268 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 203, 253 |
Conread position: | 298-738 |
Cow position: | chr29:31121340-31120888 (view UCSC Genome Browser custom track) |
Alignm length: | 455 |
Alignm identity: | 284 |
Alignm E-value: | 5e-32 |
Alignm gaps (pig, cow): | 19, 307 |
Conread position: | 300-632 |
Cow position: | chr29:34622493-34622809 (view UCSC Genome Browser custom track) |
Alignm length: | 337 |
Alignm identity: | 228 |
Alignm E-value: | 1e-30 |
Alignm gaps (pig, cow): | 113, 49 |
Conread position: | 300-633 |
Cow position: | chr29:22318371-22318715 (view UCSC Genome Browser custom track) |
Alignm length: | 346 |
Alignm identity: | 246 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 167, 154 |
Conread position: | 306-889 |
Cow position: | chr29:670181-670773 (view UCSC Genome Browser custom track) |
Alignm length: | 597 |
Alignm identity: | 334 |
Alignm E-value: | 8e-36 |
Alignm gaps (pig, cow): | 161, 503 |
Conread position: | 352-889 |
Cow position: | chr29:19884743-19884185 (view UCSC Genome Browser custom track) |
Alignm length: | 563 |
Alignm identity: | 355 |
Alignm E-value: | 4.99983e-42 |
Alignm gaps (pig, cow): | 106, 85 |
Conread position: | 353-911 |
Cow position: | chr29:40468276-40467708 (view UCSC Genome Browser custom track) |
Alignm length: | 574 |
Alignm identity: | 348 |
Alignm E-value: | 6e-33 |
Alignm gaps (pig, cow): | 114, 131 |
Conread position: | 359-634 |
Cow position: | chr29:15984723-15984438 (view UCSC Genome Browser custom track) |
Alignm length: | 286 |
Alignm identity: | 189 |
Alignm E-value: | 9e-27 |
Alignm gaps (pig, cow): | 74, 0 |
Conread position: | 369-911 |
Cow position: | chr29:32560580-32561131 (view UCSC Genome Browser custom track) |
Alignm length: | 557 |
Alignm identity: | 341 |
Alignm E-value: | 8e-36 |
Alignm gaps (pig, cow): | 98, 428 |
Conread position: | 384-631 |
Cow position: | chr29:43366696-43366946 (view UCSC Genome Browser custom track) |
Alignm length: | 253 |
Alignm identity: | 175 |
Alignm E-value: | 2e-31 |
Alignm gaps (pig, cow): | 83, 144 |
Conread position: | 468-911 |
Cow position: | chr29:34925229-34924779 (view UCSC Genome Browser custom track) |
Alignm length: | 455 |
Alignm identity: | 272 |
Alignm E-value: | 5e-21 |
Alignm gaps (pig, cow): | 80, 30 |
Conread position: | 545-748 |
Cow position: | chr29:45465035-45465242 (view UCSC Genome Browser custom track) |
Alignm length: | 211 |
Alignm identity: | 158 |
Alignm E-value: | 6e-33 |
Alignm gaps (pig, cow): | 16, 73 |
Conread position: | 547-1149 |
Cow position: | chr29:103355-102736 (view UCSC Genome Browser custom track) |
Alignm length: | 627 |
Alignm identity: | 438 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 14, 173 |
Conread position: | 548-837 |
Cow position: | chr29:34752931-34753226 (view UCSC Genome Browser custom track) |
Alignm length: | 298 |
Alignm identity: | 196 |
Alignm E-value: | 3e-28 |
Alignm gaps (pig, cow): | 13, 245 |
Conread position: | 735-1136 |
Cow position: | chr29:15288580-15288163 (view UCSC Genome Browser custom track) |
Alignm length: | 422 |
Alignm identity: | 279 |
Alignm E-value: | 1e-37 |
Alignm gaps (pig, cow): | 20, 181 |
Conread position: | 808-1145 |
Cow position: | chr29:8660327-8659990 (view UCSC Genome Browser custom track) |
Alignm length: | 344 |
Alignm identity: | 243 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 128, 96 |
Conread position: | 850-1138 |
Cow position: | chr29:27263465-27263757 (view UCSC Genome Browser custom track) |
Alignm length: | 298 |
Alignm identity: | 193 |
Alignm E-value: | 2e-23 |
Alignm gaps (pig, cow): | 163, 54 |
Show alignments to all cow chromosomes.