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Cow genome map

           
Conread name:
           
Ss1.1-Tra1-TCH01E040098.5
        

               
Conread position:
               
1-123
               

               
Cow position:
               
chr3:66638522-66638396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
1-153
               

               
Cow position:
               
chr3:3806138-3805985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
1-158
               

               
Cow position:
               
chr3:80871686-80871531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
1-189
               

               
Cow position:
               
chr3:58947238-58947050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
51, 86
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr3:50915088-50914881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
59, 147
               

               
Conread position:
               
1-222
               

               
Cow position:
               
chr3:7168386-7168164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
49, 145
               

               
Conread position:
               
1-260
               

               
Cow position:
               
chr3:47179421-47179682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
49, 153
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr3:56321100-56320825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
52, 153
               

               
Conread position:
               
1-270
               

               
Cow position:
               
chr3:31898189-31898457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 147
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr3:19943847-19943590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
83, 61
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr3:6782170-6781886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 150
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr3:5829846-5830170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 146
               

               
Conread position:
               
1-338
               

               
Cow position:
               
chr3:48231207-48231524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
1-347
               

               
Cow position:
               
chr3:57856519-57856171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 153
               

               
Conread position:
               
1-369
               

               
Cow position:
               
chr3:45032524-45032156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 153
               

               
Conread position:
               
1-370
               

               
Cow position:
               
chr3:19878445-19878076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 146
               

               
Conread position:
               
1-370
               

               
Cow position:
               
chr3:32146308-32146671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 33
               

               
Conread position:
               
1-435
               

               
Cow position:
               
chr3:66891179-66891628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 96
               

               
Conread position:
               
1-503
               

               
Cow position:
               
chr3:56340641-56341150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 55
               

               
Conread position:
               
1-515
               

               
Cow position:
               
chr3:19692309-19692808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 9
               

               
Conread position:
               
1-527
               

               
Cow position:
               
chr3:49308901-49309395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
85, 66
               

               
Conread position:
               
1-539
               

               
Cow position:
               
chr3:6685244-6684709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 172
               

               
Conread position:
               
1-542
               

               
Cow position:
               
chr3:64358383-64358921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 94
               

               
Conread position:
               
1-621
               

               
Cow position:
               
chr3:2653890-2653293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
628
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 143
               

               
Conread position:
               
1-629
               

               
Cow position:
               
chr3:66119439-66118844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
641
               

               
Alignm identity:
               
436
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 92
               

               
Conread position:
               
1-631
               

               
Cow position:
               
chr3:31354474-31355071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
640
               

               
Alignm identity:
               
440
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 142
               

               
Conread position:
               
1-633
               

               
Cow position:
               
chr3:2633711-2633096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
648
               

               
Alignm identity:
               
451
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 142
               

               
Conread position:
               
1-633
               

               
Cow position:
               
chr3:9716596-9715979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
651
               

               
Alignm identity:
               
474
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 48
               

               
Conread position:
               
1-634
               

               
Cow position:
               
chr3:40340181-40340845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
668
               

               
Alignm identity:
               
447
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 55
               

               
Conread position:
               
1-648
               

               
Cow position:
               
chr3:42432018-42431354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
676
               

               
Alignm identity:
               
454
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 157
               

               
Conread position:
               
1-671
               

               
Cow position:
               
chr3:64028303-64029004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
705
               

               
Alignm identity:
               
467
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 150
               

               
Conread position:
               
1-701
               

               
Cow position:
               
chr3:2917245-2916514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
741
               

               
Alignm identity:
               
482
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 153
               

               
Conread position:
               
1-742
               

               
Cow position:
               
chr3:47081875-47082634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
777
               

               
Alignm identity:
               
518
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 149
               

               
Conread position:
               
1-829
               

               
Cow position:
               
chr3:19938696-19937845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
863
               

               
Alignm identity:
               
576
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 153
               

               
Conread position:
               
1-830
               

               
Cow position:
               
chr3:39326470-39325665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
847
               

               
Alignm identity:
               
627
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 71
               

               
Conread position:
               
1-834
               

               
Cow position:
               
chr3:72704980-72704118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
870
               

               
Alignm identity:
               
558
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 153
               

               
Conread position:
               
1-889
               

               
Cow position:
               
chr3:22335675-22334762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
924
               

               
Alignm identity:
               
593
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 153
               

               
Conread position:
               
1-889
               

               
Cow position:
               
chr3:24314261-24313338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
928
               

               
Alignm identity:
               
588
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 153
               

               
Conread position:
               
1-889
               

               
Cow position:
               
chr3:41211955-41212887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
938
               

               
Alignm identity:
               
602
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 153
               

               
Conread position:
               
1-911
               

               
Cow position:
               
chr3:4285668-4284713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
966
               

               
Alignm identity:
               
611
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 153
               

               
Conread position:
               
1-911
               

               
Cow position:
               
chr3:15989253-15990189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
951
               

               
Alignm identity:
               
602
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 164
               

               
Conread position:
               
1-911
               

               
Cow position:
               
chr3:49614194-49615134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
949
               

               
Alignm identity:
               
599
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 174
               

               
Conread position:
               
1-911
               

               
Cow position:
               
chr3:64650414-64649461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
961
               

               
Alignm identity:
               
624
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 163
               

               
Conread position:
               
1-1146
               

               
Cow position:
               
chr3:2909311-2910444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
1177
               

               
Alignm identity:
               
839
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
467, 64
               

               
Conread position:
               
2-157
               

               
Cow position:
               
chr3:4027055-4026899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
29, 150
               

               
Conread position:
               
2-256
               

               
Cow position:
               
chr3:26949296-26949052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
50, 112
               

               
Conread position:
               
2-265
               

               
Cow position:
               
chr3:19757178-19757443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 152
               

               
Conread position:
               
2-407
               

               
Cow position:
               
chr3:70083864-70084241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 104
               

               
Conread position:
               
2-432
               

               
Cow position:
               
chr3:49545394-49545806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 149
               

               
Conread position:
               
2-469
               

               
Cow position:
               
chr3:42630795-42630327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
71, 304
               

               
Conread position:
               
2-501
               

               
Cow position:
               
chr3:72629850-72629361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 149
               

               
Conread position:
               
2-503
               

               
Cow position:
               
chr3:30314338-30313819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
371, 148
               

               
Conread position:
               
2-516
               

               
Cow position:
               
chr3:3980167-3979677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 47
               

               
Conread position:
               
2-525
               

               
Cow position:
               
chr3:40823170-40822636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 152
               

               
Conread position:
               
2-525
               

               
Cow position:
               
chr3:59861147-59860628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 152
               

               
Conread position:
               
2-557
               

               
Cow position:
               
chr3:69933179-69932630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 152
               

               
Conread position:
               
2-566
               

               
Cow position:
               
chr3:75041385-75041926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
446, 140
               

               
Conread position:
               
2-597
               

               
Cow position:
               
chr3:57484942-57485539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
616
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 96
               

               
Conread position:
               
2-603
               

               
Cow position:
               
chr3:78027629-78028231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
619
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 152
               

               
Conread position:
               
2-607
               

               
Cow position:
               
chr3:3054391-3053810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
612
               

               
Alignm identity:
               
467
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 75
               

               
Conread position:
               
2-631
               

               
Cow position:
               
chr3:34396271-34396876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
648
               

               
Alignm identity:
               
460
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 94
               

               
Conread position:
               
2-632
               

               
Cow position:
               
chr3:36882133-36882757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
644
               

               
Alignm identity:
               
438
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 149
               

               
Conread position:
               
2-634
               

               
Cow position:
               
chr3:594360-593749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
646
               

               
Alignm identity:
               
440
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
386, 48
               

               
Conread position:
               
2-634
               

               
Cow position:
               
chr3:2711179-2711805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
648
               

               
Alignm identity:
               
442
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 26
               

               
Conread position:
               
2-634
               

               
Cow position:
               
chr3:18811284-18810654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
649
               

               
Alignm identity:
               
443
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 82
               

               
Conread position:
               
2-634
               

               
Cow position:
               
chr3:21182903-21183527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
646
               

               
Alignm identity:
               
445
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 149
               

               
Conread position:
               
2-634
               

               
Cow position:
               
chr3:23291623-23292255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
650
               

               
Alignm identity:
               
442
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 152
               

               
Conread position:
               
2-634
               

               
Cow position:
               
chr3:43039911-43040535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
645
               

               
Alignm identity:
               
446
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 151
               

               
Conread position:
               
2-636
               

               
Cow position:
               
chr3:5954405-5955021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
652
               

               
Alignm identity:
               
439
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 152
               

               
Conread position:
               
2-888
               

               
Cow position:
               
chr3:46678131-46679052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
926
               

               
Alignm identity:
               
594
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 152
               

               
Conread position:
               
2-889
               

               
Cow position:
               
chr3:49677541-49676643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
908
               

               
Alignm identity:
               
644
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 124
               

               
Conread position:
               
2-911
               

               
Cow position:
               
chr3:3522796-3521856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
952
               

               
Alignm identity:
               
613
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 152
               

               
Conread position:
               
2-1140
               

               
Cow position:
               
chr3:52864967-52866113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
1161
               

               
Alignm identity:
               
872
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 112
               

               
Conread position:
               
3-159
               

               
Cow position:
               
chr3:17952142-17951983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
51, 144
               

               
Conread position:
               
3-270
               

               
Cow position:
               
chr3:42580185-42580453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 21
               

               
Conread position:
               
3-276
               

               
Cow position:
               
chr3:53410697-53410436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
3-691
               

               
Cow position:
               
chr3:19802204-19801516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
704
               

               
Alignm identity:
               
530
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 151
               

               
Conread position:
               
5-454
               

               
Cow position:
               
chr3:50128100-50128534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
256, 118
               

               
Conread position:
               
5-634
               

               
Cow position:
               
chr3:48061050-48061679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
651
               

               
Alignm identity:
               
442
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 143
               

               
Conread position:
               
6-270
               

               
Cow position:
               
chr3:77474538-77474276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 30
               

               
Conread position:
               
7-174
               

               
Cow position:
               
chr3:66990581-66990411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
7, 132
               

               
Conread position:
               
7-339
               

               
Cow position:
               
chr3:49140633-49140961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
46, 73
               

               
Conread position:
               
10-257
               

               
Cow position:
               
chr3:14588456-14588213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
32, 81
               

               
Conread position:
               
10-307
               

               
Cow position:
               
chr3:36127165-36126881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
43, 128
               

               
Conread position:
               
11-144
               

               
Cow position:
               
chr3:18463813-18463940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
11-267
               

               
Cow position:
               
chr3:472306-472068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
53, 97
               

               
Conread position:
               
11-284
               

               
Cow position:
               
chr3:36691420-36691692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 59
               

               
Conread position:
               
11-330
               

               
Cow position:
               
chr3:18729359-18729691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
41, 214
               

               
Conread position:
               
11-336
               

               
Cow position:
               
chr3:45775302-45775617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
46, 37
               

               
Conread position:
               
11-470
               

               
Cow position:
               
chr3:54864925-54865385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
15, 81
               

               
Conread position:
               
11-527
               

               
Cow position:
               
chr3:21945632-21946141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 282
               

               
Conread position:
               
11-536
               

               
Cow position:
               
chr3:38866174-38865656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 104
               

               
Conread position:
               
11-543
               

               
Cow position:
               
chr3:18357113-18357625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
156, 20
               

               
Conread position:
               
11-614
               

               
Cow position:
               
chr3:10239421-10238821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
619
               

               
Alignm identity:
               
430
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 24
               

               
Conread position:
               
11-614
               

               
Cow position:
               
chr3:18542635-18543263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
635
               

               
Alignm identity:
               
436
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 143
               

               
Conread position:
               
11-631
               

               
Cow position:
               
chr3:207387-207983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
636
               

               
Alignm identity:
               
440
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 143
               

               
Conread position:
               
11-633
               

               
Cow position:
               
chr3:5047411-5048009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
638
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 135
               

               
Conread position:
               
11-633
               

               
Cow position:
               
chr3:55229921-55230532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
640
               

               
Alignm identity:
               
452
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 173
               

               
Conread position:
               
11-634
               

               
Cow position:
               
chr3:34031124-34031748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
644
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 143
               

               
Conread position:
               
11-634
               

               
Cow position:
               
chr3:56650496-56651105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
637
               

               
Alignm identity:
               
432
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
437, 69
               

               
Conread position:
               
11-763
               

               
Cow position:
               
chr3:37968853-37968075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
783
               

               
Alignm identity:
               
521
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 44
               

               
Conread position:
               
11-889
               

               
Cow position:
               
chr3:17828877-17829781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
912
               

               
Alignm identity:
               
583
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 140
               

               
Conread position:
               
11-889
               

               
Cow position:
               
chr3:46861525-46862438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
919
               

               
Alignm identity:
               
581
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 169
               

               
Conread position:
               
11-911
               

               
Cow position:
               
chr3:14439956-14440886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
939
               

               
Alignm identity:
               
598
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 94
               

               
Conread position:
               
12-457
               

               
Cow position:
               
chr3:50209133-50208701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
135, 17
               

               
Conread position:
               
12-526
               

               
Cow position:
               
chr3:14634340-14634822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
454, 37
               

               
Conread position:
               
12-634
               

               
Cow position:
               
chr3:64017592-64018218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
645
               

               
Alignm identity:
               
448
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 142
               

               
Conread position:
               
13-493
               

               
Cow position:
               
chr3:15178081-15177614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 87
               

               
Conread position:
               
13-546
               

               
Cow position:
               
chr3:36098934-36099466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 42
               

               
Conread position:
               
13-1140
               

               
Cow position:
               
chr3:63005378-63006501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
1163
               

               
Alignm identity:
               
785
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 72
               

               
Conread position:
               
15-526
               

               
Cow position:
               
chr3:83295481-83295996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
106, 45
               

               
Conread position:
               
16-503
               

               
Cow position:
               
chr3:5883308-5882827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 138
               

               
Conread position:
               
16-539
               

               
Cow position:
               
chr3:57499751-57500272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 17
               

               
Conread position:
               
17-519
               

               
Cow position:
               
chr3:32842659-32843156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 122
               

               
Conread position:
               
24-911
               

               
Cow position:
               
chr3:32623252-32624165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
926
               

               
Alignm identity:
               
604
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 103
               

               
Conread position:
               
28-634
               

               
Cow position:
               
chr3:66618939-66618358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
621
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 31
               

               
Conread position:
               
29-270
               

               
Cow position:
               
chr3:13513450-13513689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
40, 97
               

               
Conread position:
               
33-520
               

               
Cow position:
               
chr3:58208342-58208812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
71, 37
               

               
Conread position:
               
33-536
               

               
Cow position:
               
chr3:24591861-24592354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 105
               

               
Conread position:
               
52-911
               

               
Cow position:
               
chr3:36117390-36116505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
896
               

               
Alignm identity:
               
579
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
237, 98
               

               
Conread position:
               
55-545
               

               
Cow position:
               
chr3:5996143-5996624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 45
               

               
Conread position:
               
55-634
               

               
Cow position:
               
chr3:47273240-47273808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 96
               

               
Conread position:
               
56-498
               

               
Cow position:
               
chr3:30929404-30928978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
119, 103
               

               
Conread position:
               
79-549
               

               
Cow position:
               
chr3:83700445-83700890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
384, 41
               

               
Conread position:
               
88-672
               

               
Cow position:
               
chr3:24359953-24359375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
298, 62
               

               
Conread position:
               
99-493
               

               
Cow position:
               
chr3:83234410-83234791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
170, 41
               

               
Conread position:
               
106-534
               

               
Cow position:
               
chr3:54783240-54782819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
25, 37
               

               
Conread position:
               
110-637
               

               
Cow position:
               
chr3:46502704-46502170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
209, 40
               

               
Conread position:
               
115-270
               

               
Cow position:
               
chr3:66637711-66637558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
129-457
               

               
Cow position:
               
chr3:18464099-18464421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
135-889
               

               
Cow position:
               
chr3:7159137-7159915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
785
               

               
Alignm identity:
               
481
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 32
               

               
Conread position:
               
140-534
               

               
Cow position:
               
chr3:14754847-14755238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 53
               

               
Conread position:
               
147-877
               

               
Cow position:
               
chr3:17951303-17950564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
750
               

               
Alignm identity:
               
571
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
251, 146
               

               
Conread position:
               
153-551
               

               
Cow position:
               
chr3:53515362-53514966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
283, 178
               

               
Conread position:
               
212-631
               

               
Cow position:
               
chr3:66637636-66637218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 6
               

               
Conread position:
               
218-633
               

               
Cow position:
               
chr3:5830038-5830452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 37
               

               
Conread position:
               
218-633
               

               
Cow position:
               
chr3:69211800-69212203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
20, 31
               

               
Conread position:
               
221-503
               

               
Cow position:
               
chr3:43193143-43193417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
227, 106
               

               
Conread position:
               
257-634
               

               
Cow position:
               
chr3:19757723-19758102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
194, 74
               

               
Conread position:
               
273-631
               

               
Cow position:
               
chr3:44255444-44255804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 169
               

               
Conread position:
               
273-633
               

               
Cow position:
               
chr3:31898439-31898787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
194, 20
               

               
Conread position:
               
279-470
               

               
Cow position:
               
chr3:26948849-26948658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
18, 65
               

               
Conread position:
               
293-542
               

               
Cow position:
               
chr3:48329910-48329666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
173, 33
               

               
Conread position:
               
298-518
               

               
Cow position:
               
chr3:50011907-50011683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
168, 150
               

               
Conread position:
               
302-546
               

               
Cow position:
               
chr3:56320345-56320100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
19, 50
               

               
Conread position:
               
319-529
               

               
Cow position:
               
chr3:27905795-27906004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
9, 137
               

               
Conread position:
               
330-703
               

               
Cow position:
               
chr3:48231472-48231852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 14
               

               
Conread position:
               
351-672
               

               
Cow position:
               
chr3:44987771-44988107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
68, 95
               

               
Conread position:
               
351-672
               

               
Cow position:
               
chr3:47616509-47616842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
116, 103
               

               
Conread position:
               
351-889
               

               
Cow position:
               
chr3:2369749-2370294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
116, 322
               

               
Conread position:
               
352-911
               

               
Cow position:
               
chr3:48841059-48840489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
115, 283
               

               
Conread position:
               
358-522
               

               
Cow position:
               
chr3:66805238-66805068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
358-631
               

               
Cow position:
               
chr3:471781-471504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
108, 96
               

               
Conread position:
               
358-634
               

               
Cow position:
               
chr3:14888719-14888439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
99, 153
               

               
Conread position:
               
358-889
               

               
Cow position:
               
chr3:6781527-6780984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 451
               

               
Conread position:
               
364-671
               

               
Cow position:
               
chr3:49013124-49013444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
369-669
               

               
Cow position:
               
chr3:19672179-19671869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
98, 10
               

               
Conread position:
               
393-1146
               

               
Cow position:
               
chr3:3907535-3908315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
786
               

               
Alignm identity:
               
571
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 32
               

               
Conread position:
               
401-633
               

               
Cow position:
               
chr3:77474196-77473960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
62, 125
               

               
Conread position:
               
439-1144
               

               
Cow position:
               
chr3:58947049-58946354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
723
               

               
Alignm identity:
               
522
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 21
               

               
Conread position:
               
466-911
               

               
Cow position:
               
chr3:47741488-47741942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
102, 339
               

               
Conread position:
               
467-889
               

               
Cow position:
               
chr3:66892866-66893296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
101, 169
               

               
Conread position:
               
508-777
               

               
Cow position:
               
chr3:15054820-15055084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 171
               

               
Conread position:
               
518-845
               

               
Cow position:
               
chr3:64359050-64359372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
41, 72
               

               
Conread position:
               
531-1146
               

               
Cow position:
               
chr3:24592895-24593514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
635
               

               
Alignm identity:
               
436
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 91
               

               
Conread position:
               
590-752
               

               
Cow position:
               
chr3:3979459-3979297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
132, 139
               

               
Conread position:
               
599-1146
               

               
Cow position:
               
chr3:60891321-60890764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 70
               

               
Conread position:
               
621-1145
               

               
Cow position:
               
chr3:27906268-27906815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 343
               

               
Conread position:
               
707-1084
               

               
Cow position:
               
chr3:2854877-2855251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
48, 105
               

               
Conread position:
               
713-1144
               

               
Cow position:
               
chr3:3053640-3053204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 45
               

               
Conread position:
               
717-1149
               

               
Cow position:
               
chr3:208025-208448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
37, 29
               

               
Conread position:
               
728-1146
               

               
Cow position:
               
chr3:6879095-6879519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
27, 163
               

               
Conread position:
               
729-1127
               

               
Cow position:
               
chr3:6684589-6684196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
26, 95
               

               
Conread position:
               
739-1066
               

               
Cow position:
               
chr3:48231863-48232173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
8, 19
               

               
Conread position:
               
768-1146
               

               
Cow position:
               
chr3:15055371-15055740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
806-1138
               

               
Cow position:
               
chr3:3979313-3978968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
36, 108
               

               
Conread position:
               
846-1149
               

               
Cow position:
               
chr3:43347940-43348250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
58, 38
               

               
Conread position:
               
847-1146
               

               
Cow position:
               
chr3:57441750-57441459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
854-1140
               

               
Cow position:
               
chr3:64906803-64906516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
158, 39
               

               
Conread position:
               
888-1145
               

               
Cow position:
               
chr3:39325670-39325404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
35, 17
               

               
Conread position:
               
895-1140
               

               
Cow position:
               
chr3:69215879-69216128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
104, 9
               

               
Conread position:
               
903-1141
               

               
Cow position:
               
chr3:34397026-34397270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
103, 183
               

               
Conread position:
               
927-1083
               

               
Cow position:
               
chr3:64359434-64359595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
927-1134
               

               
Cow position:
               
chr3:66637002-66636787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
935-1149
               

               
Cow position:
               
chr3:55231076-55231297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
71, 58
               

               
Conread position:
               
948-1144
               

               
Cow position:
               
chr3:17950396-17950197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
76, 111
               
Show alignments to all cow chromosomes.