Cow genome map

Conread name: Ss1.1-Tra1-TCH01E040098.5

Conread position: 1-167
Cow position: chr4:18424933-18425100 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 122
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 49, 55

Conread position: 1-252
Cow position: chr4:27442677-27442433 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 176
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 53, 149

Conread position: 1-370
Cow position: chr4:5879758-5879402 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 55

Conread position: 1-370
Cow position: chr4:23114589-23114959 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 97

Conread position: 1-370
Cow position: chr4:65223947-65224318 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 99

Conread position: 1-400
Cow position: chr4:11383998-11383623 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 276
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 47, 168

Conread position: 1-418
Cow position: chr4:1464341-1464743 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 365, 44

Conread position: 1-524
Cow position: chr4:1371427-1371914 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 346, 81

Conread position: 1-594
Cow position: chr4:44724670-44724089 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 153

Conread position: 1-633
Cow position: chr4:66925592-66924975 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 103

Conread position: 1-749
Cow position: chr4:47764583-47765366 (view UCSC Genome Browser custom track)
Alignm length: 786
Alignm identity: 517
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 153

Conread position: 1-751
Cow position: chr4:30307865-30308629 (view UCSC Genome Browser custom track)
Alignm length: 787
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 125

Conread position: 1-820
Cow position: chr4:28830627-28829825 (view UCSC Genome Browser custom track)
Alignm length: 840
Alignm identity: 612
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 122

Conread position: 1-884
Cow position: chr4:602581-601669 (view UCSC Genome Browser custom track)
Alignm length: 922
Alignm identity: 574
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 55

Conread position: 1-887
Cow position: chr4:6269041-6269954 (view UCSC Genome Browser custom track)
Alignm length: 926
Alignm identity: 601
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 153

Conread position: 1-887
Cow position: chr4:16056191-16055257 (view UCSC Genome Browser custom track)
Alignm length: 937
Alignm identity: 606
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 676

Conread position: 1-911
Cow position: chr4:528580-527637 (view UCSC Genome Browser custom track)
Alignm length: 951
Alignm identity: 614
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 153

Conread position: 1-911
Cow position: chr4:1931033-1931952 (view UCSC Genome Browser custom track)
Alignm length: 928
Alignm identity: 581
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 153

Conread position: 1-911
Cow position: chr4:3125368-3124456 (view UCSC Genome Browser custom track)
Alignm length: 929
Alignm identity: 578
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 153

Conread position: 1-911
Cow position: chr4:9311824-9310878 (view UCSC Genome Browser custom track)
Alignm length: 955
Alignm identity: 616
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 99

Conread position: 1-911
Cow position: chr4:13547615-13546663 (view UCSC Genome Browser custom track)
Alignm length: 956
Alignm identity: 585
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 544

Conread position: 1-1077
Cow position: chr4:46663789-46662709 (view UCSC Genome Browser custom track)
Alignm length: 1105
Alignm identity: 793
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 151

Conread position: 2-303
Cow position: chr4:32211753-32211451 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 177
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 48, 152

Conread position: 2-536
Cow position: chr4:31668900-31668401 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 81

Conread position: 2-580
Cow position: chr4:6490760-6491340 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 152

Conread position: 2-603
Cow position: chr4:355497-354898 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 149

Conread position: 2-603
Cow position: chr4:43320050-43320652 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 152

Conread position: 2-603
Cow position: chr4:43880695-43880094 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 143

Conread position: 2-610
Cow position: chr4:16359473-16358885 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 432, 111

Conread position: 2-616
Cow position: chr4:41331027-41330416 (view UCSC Genome Browser custom track)
Alignm length: 629
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 153

Conread position: 2-632
Cow position: chr4:18516482-18515840 (view UCSC Genome Browser custom track)
Alignm length: 654
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 152

Conread position: 2-634
Cow position: chr4:1050034-1050671 (view UCSC Genome Browser custom track)
Alignm length: 654
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 152

Conread position: 2-634
Cow position: chr4:3961178-3960552 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 58

Conread position: 2-634
Cow position: chr4:4905740-4905107 (view UCSC Genome Browser custom track)
Alignm length: 653
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 152

Conread position: 2-634
Cow position: chr4:13492162-13491528 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 152

Conread position: 2-634
Cow position: chr4:24445613-24446247 (view UCSC Genome Browser custom track)
Alignm length: 654
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 108

Conread position: 2-634
Cow position: chr4:25600026-25600646 (view UCSC Genome Browser custom track)
Alignm length: 650
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 83

Conread position: 2-634
Cow position: chr4:29532128-29532761 (view UCSC Genome Browser custom track)
Alignm length: 650
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 152

Conread position: 2-634
Cow position: chr4:33493398-33492762 (view UCSC Genome Browser custom track)
Alignm length: 653
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 153

Conread position: 2-634
Cow position: chr4:36895960-36895328 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 152

Conread position: 3-370
Cow position: chr4:6449307-6449668 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 253
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 223, 22

Conread position: 3-526
Cow position: chr4:3830067-3829566 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 337
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 113, 61

Conread position: 7-347
Cow position: chr4:6214971-6215308 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 231
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 42, 131

Conread position: 9-539
Cow position: chr4:21359225-21358723 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 356
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 7, 64

Conread position: 11-151
Cow position: chr4:66179411-66179553 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 120
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 45, 0

Conread position: 11-247
Cow position: chr4:1497175-1497414 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 166
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 42, 78

Conread position: 11-285
Cow position: chr4:17926677-17926953 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 143

Conread position: 11-288
Cow position: chr4:60265209-60265487 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 208
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 30, 151

Conread position: 11-291
Cow position: chr4:47718030-47718295 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 201
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 41, 0

Conread position: 11-306
Cow position: chr4:12241642-12241942 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 212
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 42, 144

Conread position: 11-348
Cow position: chr4:22471766-22471446 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 223
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 196, 42

Conread position: 11-430
Cow position: chr4:10408358-10407929 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 265

Conread position: 11-523
Cow position: chr4:60630675-60631164 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 328
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 282, 139

Conread position: 11-523
Cow position: chr4:60673478-60672979 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 326
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 282, 175

Conread position: 11-634
Cow position: chr4:45049722-45050344 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 441, 139

Conread position: 11-634
Cow position: chr4:48025979-48025358 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 144

Conread position: 11-889
Cow position: chr4:158092-157196 (view UCSC Genome Browser custom track)
Alignm length: 918
Alignm identity: 597
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 35

Conread position: 11-911
Cow position: chr4:101352-102278 (view UCSC Genome Browser custom track)
Alignm length: 932
Alignm identity: 585
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 134

Conread position: 11-1123
Cow position: chr4:34185286-34186354 (view UCSC Genome Browser custom track)
Alignm length: 1132
Alignm identity: 783
Alignm E-value: 0
Alignm gaps (pig, cow): 247, 88

Conread position: 12-503
Cow position: chr4:8598562-8599030 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 330
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 155, 52

Conread position: 12-725
Cow position: chr4:21338412-21339119 (view UCSC Genome Browser custom track)
Alignm length: 733
Alignm identity: 536
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 100

Conread position: 13-317
Cow position: chr4:54190430-54190146 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 52

Conread position: 22-493
Cow position: chr4:51044318-51044784 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 318
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 78, 144

Conread position: 23-503
Cow position: chr4:46712776-46713241 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 131

Conread position: 51-440
Cow position: chr4:41428157-41427779 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 250
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 6, 83

Conread position: 55-634
Cow position: chr4:33073854-33074426 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 96

Conread position: 56-445
Cow position: chr4:40824715-40825097 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 307

Conread position: 58-631
Cow position: chr4:11617971-11617438 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 84

Conread position: 63-518
Cow position: chr4:41118650-41118205 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 89

Conread position: 63-911
Cow position: chr4:41954315-41953448 (view UCSC Genome Browser custom track)
Alignm length: 878
Alignm identity: 555
Alignm E-value: 0
Alignm gaps (pig, cow): 305, 87

Conread position: 70-511
Cow position: chr4:3358239-3357812 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 80

Conread position: 70-580
Cow position: chr4:57978931-57978432 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 381, 80

Conread position: 73-487
Cow position: chr4:30283203-30282803 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 268
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 262, 37

Conread position: 128-512
Cow position: chr4:54955429-54955039 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 22

Conread position: 138-526
Cow position: chr4:15193464-15193087 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 250
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 34, 73

Conread position: 170-911
Cow position: chr4:32211546-32210774 (view UCSC Genome Browser custom track)
Alignm length: 778
Alignm identity: 446
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 97, 360

Conread position: 237-889
Cow position: chr4:24652157-24652819 (view UCSC Genome Browser custom track)
Alignm length: 668
Alignm identity: 402
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 99, 36

Conread position: 293-836
Cow position: chr4:4168788-4168257 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 56

Conread position: 351-871
Cow position: chr4:6566434-6565903 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 341
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 107, 87

Conread position: 358-634
Cow position: chr4:17927302-17927585 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 196
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 86, 157

Conread position: 380-630
Cow position: chr4:47718337-47718587 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 170
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 86, 74

Conread position: 512-703
Cow position: chr4:1372117-1372305 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 135
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 55, 67

Conread position: 542-1152
Cow position: chr4:54954852-54954228 (view UCSC Genome Browser custom track)
Alignm length: 636
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 218

Conread position: 582-751
Cow position: chr4:1465081-1465250 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 126
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 677-1139
Cow position: chr4:27301377-27301844 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 79

Conread position: 705-1141
Cow position: chr4:10407819-10407379 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 282
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 8, 14

Conread position: 765-1139
Cow position: chr4:21343612-21343987 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 59

Conread position: 916-1134
Cow position: chr4:11617236-11617011 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 153
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 90, 14

Conread position: 916-1146
Cow position: chr4:54966698-54966474 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 163
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 137, 27

Show alignments to all cow chromosomes.