Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01E040098.5 |
| Conread position: | 1-167 |
| Cow position: | |
| Alignm length: | 169 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 49, 55 |
| Conread position: | 1-252 |
| Cow position: | |
| Alignm length: | 257 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 53, 149 |
| Conread position: | 1-370 |
| Cow position: | |
| Alignm length: | 371 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 55 |
| Conread position: | 1-370 |
| Cow position: | |
| Alignm length: | 375 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 97 |
| Conread position: | 1-370 |
| Cow position: | |
| Alignm length: | 375 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 99 |
| Conread position: | 1-400 |
| Cow position: | |
| Alignm length: | 406 |
| Alignm identity: | 276 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 47, 168 |
| Conread position: | 1-418 |
| Cow position: | |
| Alignm length: | 420 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 365, 44 |
| Conread position: | 1-524 |
| Cow position: | |
| Alignm length: | 528 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 346, 81 |
| Conread position: | 1-594 |
| Cow position: | |
| Alignm length: | 603 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 153 |
| Conread position: | 1-633 |
| Cow position: | |
| Alignm length: | 648 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 103 |
| Conread position: | 1-749 |
| Cow position: | |
| Alignm length: | 786 |
| Alignm identity: | 517 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 153 |
| Conread position: | 1-751 |
| Cow position: | |
| Alignm length: | 787 |
| Alignm identity: | 504 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 125 |
| Conread position: | 1-820 |
| Cow position: | |
| Alignm length: | 840 |
| Alignm identity: | 612 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 122 |
| Conread position: | 1-884 |
| Cow position: | |
| Alignm length: | 922 |
| Alignm identity: | 574 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 55 |
| Conread position: | 1-887 |
| Cow position: | |
| Alignm length: | 926 |
| Alignm identity: | 601 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 153 |
| Conread position: | 1-887 |
| Cow position: | |
| Alignm length: | 937 |
| Alignm identity: | 606 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 676 |
| Conread position: | 1-911 |
| Cow position: | |
| Alignm length: | 951 |
| Alignm identity: | 614 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 153 |
| Conread position: | 1-911 |
| Cow position: | |
| Alignm length: | 928 |
| Alignm identity: | 581 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 153 |
| Conread position: | 1-911 |
| Cow position: | |
| Alignm length: | 929 |
| Alignm identity: | 578 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 153 |
| Conread position: | 1-911 |
| Cow position: | |
| Alignm length: | 955 |
| Alignm identity: | 616 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 99 |
| Conread position: | 1-911 |
| Cow position: | |
| Alignm length: | 956 |
| Alignm identity: | 585 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 544 |
| Conread position: | 1-1077 |
| Cow position: | |
| Alignm length: | 1105 |
| Alignm identity: | 793 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 151 |
| Conread position: | 2-303 |
| Cow position: | |
| Alignm length: | 306 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 48, 152 |
| Conread position: | 2-536 |
| Cow position: | |
| Alignm length: | 538 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 81 |
| Conread position: | 2-580 |
| Cow position: | |
| Alignm length: | 596 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 152 |
| Conread position: | 2-603 |
| Cow position: | |
| Alignm length: | 618 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 149 |
| Conread position: | 2-603 |
| Cow position: | |
| Alignm length: | 619 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 152 |
| Conread position: | 2-603 |
| Cow position: | |
| Alignm length: | 621 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 143 |
| Conread position: | 2-610 |
| Cow position: | |
| Alignm length: | 622 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 432, 111 |
| Conread position: | 2-616 |
| Cow position: | |
| Alignm length: | 629 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 153 |
| Conread position: | 2-632 |
| Cow position: | |
| Alignm length: | 654 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 152 |
| Conread position: | 2-634 |
| Cow position: | |
| Alignm length: | 654 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 152 |
| Conread position: | 2-634 |
| Cow position: | |
| Alignm length: | 643 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 58 |
| Conread position: | 2-634 |
| Cow position: | |
| Alignm length: | 653 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 152 |
| Conread position: | 2-634 |
| Cow position: | |
| Alignm length: | 651 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 152 |
| Conread position: | 2-634 |
| Cow position: | |
| Alignm length: | 654 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 108 |
| Conread position: | 2-634 |
| Cow position: | |
| Alignm length: | 650 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 83 |
| Conread position: | 2-634 |
| Cow position: | |
| Alignm length: | 650 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 152 |
| Conread position: | 2-634 |
| Cow position: | |
| Alignm length: | 653 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 153 |
| Conread position: | 2-634 |
| Cow position: | |
| Alignm length: | 651 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 152 |
| Conread position: | 3-370 |
| Cow position: | |
| Alignm length: | 377 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 223, 22 |
| Conread position: | 3-526 |
| Cow position: | |
| Alignm length: | 532 |
| Alignm identity: | 337 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 113, 61 |
| Conread position: | 7-347 |
| Cow position: | |
| Alignm length: | 348 |
| Alignm identity: | 231 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 42, 131 |
| Conread position: | 9-539 |
| Cow position: | |
| Alignm length: | 539 |
| Alignm identity: | 356 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 7, 64 |
| Conread position: | 11-151 |
| Cow position: | |
| Alignm length: | 143 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 11-247 |
| Cow position: | |
| Alignm length: | 243 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 42, 78 |
| Conread position: | 11-285 |
| Cow position: | |
| Alignm length: | 279 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 143 |
| Conread position: | 11-288 |
| Cow position: | |
| Alignm length: | 287 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 30, 151 |
| Conread position: | 11-291 |
| Cow position: | |
| Alignm length: | 281 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 11-306 |
| Cow position: | |
| Alignm length: | 303 |
| Alignm identity: | 212 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 42, 144 |
| Conread position: | 11-348 |
| Cow position: | |
| Alignm length: | 341 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 196, 42 |
| Conread position: | 11-430 |
| Cow position: | |
| Alignm length: | 443 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 265 |
| Conread position: | 11-523 |
| Cow position: | |
| Alignm length: | 516 |
| Alignm identity: | 328 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 282, 139 |
| Conread position: | 11-523 |
| Cow position: | |
| Alignm length: | 517 |
| Alignm identity: | 326 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 282, 175 |
| Conread position: | 11-634 |
| Cow position: | |
| Alignm length: | 639 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 441, 139 |
| Conread position: | 11-634 |
| Cow position: | |
| Alignm length: | 642 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 144 |
| Conread position: | 11-889 |
| Cow position: | |
| Alignm length: | 918 |
| Alignm identity: | 597 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 35 |
| Conread position: | 11-911 |
| Cow position: | |
| Alignm length: | 932 |
| Alignm identity: | 585 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 134 |
| Conread position: | 11-1123 |
| Cow position: | |
| Alignm length: | 1132 |
| Alignm identity: | 783 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 247, 88 |
| Conread position: | 12-503 |
| Cow position: | |
| Alignm length: | 498 |
| Alignm identity: | 330 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 155, 52 |
| Conread position: | 12-725 |
| Cow position: | |
| Alignm length: | 733 |
| Alignm identity: | 536 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 100 |
| Conread position: | 13-317 |
| Cow position: | |
| Alignm length: | 306 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 52 |
| Conread position: | 22-493 |
| Cow position: | |
| Alignm length: | 485 |
| Alignm identity: | 318 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 78, 144 |
| Conread position: | 23-503 |
| Cow position: | |
| Alignm length: | 489 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 131 |
| Conread position: | 51-440 |
| Cow position: | |
| Alignm length: | 395 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 6, 83 |
| Conread position: | 55-634 |
| Cow position: | |
| Alignm length: | 593 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 96 |
| Conread position: | 56-445 |
| Cow position: | |
| Alignm length: | 396 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 307 |
| Conread position: | 58-631 |
| Cow position: | |
| Alignm length: | 580 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 84 |
| Conread position: | 63-518 |
| Cow position: | |
| Alignm length: | 462 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 89 |
| Conread position: | 63-911 |
| Cow position: | |
| Alignm length: | 878 |
| Alignm identity: | 555 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 305, 87 |
| Conread position: | 70-511 |
| Cow position: | |
| Alignm length: | 447 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 80 |
| Conread position: | 70-580 |
| Cow position: | |
| Alignm length: | 520 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 381, 80 |
| Conread position: | 73-487 |
| Cow position: | |
| Alignm length: | 418 |
| Alignm identity: | 268 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 262, 37 |
| Conread position: | 128-512 |
| Cow position: | |
| Alignm length: | 395 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 22 |
| Conread position: | 138-526 |
| Cow position: | |
| Alignm length: | 396 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 34, 73 |
| Conread position: | 170-911 |
| Cow position: | |
| Alignm length: | 778 |
| Alignm identity: | 446 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 97, 360 |
| Conread position: | 237-889 |
| Cow position: | |
| Alignm length: | 668 |
| Alignm identity: | 402 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 99, 36 |
| Conread position: | 293-836 |
| Cow position: | |
| Alignm length: | 555 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 56 |
| Conread position: | 351-871 |
| Cow position: | |
| Alignm length: | 536 |
| Alignm identity: | 341 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 107, 87 |
| Conread position: | 358-634 |
| Cow position: | |
| Alignm length: | 288 |
| Alignm identity: | 196 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 86, 157 |
| Conread position: | 380-630 |
| Cow position: | |
| Alignm length: | 257 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 86, 74 |
| Conread position: | 512-703 |
| Cow position: | |
| Alignm length: | 193 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 55, 67 |
| Conread position: | 542-1152 |
| Cow position: | |
| Alignm length: | 636 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 218 |
| Conread position: | 582-751 |
| Cow position: | |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 677-1139 |
| Cow position: | |
| Alignm length: | 473 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 79 |
| Conread position: | 705-1141 |
| Cow position: | |
| Alignm length: | 450 |
| Alignm identity: | 282 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 8, 14 |
| Conread position: | 765-1139 |
| Cow position: | |
| Alignm length: | 379 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 59 |
| Conread position: | 916-1134 |
| Cow position: | |
| Alignm length: | 227 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 90, 14 |
| Conread position: | 916-1146 |
| Cow position: | |
| Alignm length: | 232 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 137, 27 |
Show alignments to all cow chromosomes.