Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01E040098.5 |
| Conread position: | 1-144 |
| Cow position: | chr5:57977036-57976885 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1-160 |
| Cow position: | chr5:27569832-27569670 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 51, 128 |
| Conread position: | 1-162 |
| Cow position: | chr5:46005702-46005869 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 1-167 |
| Cow position: | chr5:44459164-44458995 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 49, 97 |
| Conread position: | 1-173 |
| Cow position: | chr5:29042193-29042019 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 49, 99 |
| Conread position: | 1-214 |
| Cow position: | chr5:54932536-54932751 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 49, 154 |
| Conread position: | 1-265 |
| Cow position: | chr5:41551243-41551507 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 9 |
| Conread position: | 1-287 |
| Cow position: | chr5:18665643-18665355 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 146 |
| Conread position: | 1-326 |
| Cow position: | chr5:35299745-35299418 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 146 |
| Conread position: | 1-369 |
| Cow position: | chr5:24576595-24576226 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 147 |
| Conread position: | 1-370 |
| Cow position: | chr5:26079537-26079907 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 146 |
| Conread position: | 1-466 |
| Cow position: | chr5:26090144-26090629 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 153 |
| Conread position: | 1-496 |
| Cow position: | chr5:34167741-34167258 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 322 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 161, 34 |
| Conread position: | 1-515 |
| Cow position: | chr5:46630743-46631225 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 153 |
| Conread position: | 1-525 |
| Cow position: | chr5:2530952-2530407 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 151 |
| Conread position: | 1-631 |
| Cow position: | chr5:32733563-32734164 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 147 |
| Conread position: | 1-631 |
| Cow position: | chr5:34202628-34202027 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 86 |
| Conread position: | 1-634 |
| Cow position: | chr5:10918479-10917851 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 153 |
| Conread position: | 1-657 |
| Cow position: | chr5:37755457-37756148 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 99 |
| Conread position: | 1-671 |
| Cow position: | chr5:59144463-59143757 (view UCSC Genome Browser custom track) |
| Alignm length: | 710 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 153 |
| Conread position: | 1-686 |
| Cow position: | chr5:23716269-23716946 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 110 |
| Conread position: | 1-822 |
| Cow position: | chr5:3964152-3963301 (view UCSC Genome Browser custom track) |
| Alignm length: | 860 |
| Alignm identity: | 537 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 221 |
| Conread position: | 1-829 |
| Cow position: | chr5:32772163-32771296 (view UCSC Genome Browser custom track) |
| Alignm length: | 874 |
| Alignm identity: | 575 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 153 |
| Conread position: | 1-834 |
| Cow position: | chr5:27909589-27910453 (view UCSC Genome Browser custom track) |
| Alignm length: | 872 |
| Alignm identity: | 580 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 150 |
| Conread position: | 1-888 |
| Cow position: | chr5:10844193-10845113 (view UCSC Genome Browser custom track) |
| Alignm length: | 927 |
| Alignm identity: | 604 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 153 |
| Conread position: | 1-888 |
| Cow position: | chr5:31706256-31705332 (view UCSC Genome Browser custom track) |
| Alignm length: | 932 |
| Alignm identity: | 597 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 153 |
| Conread position: | 1-911 |
| Cow position: | chr5:14379844-14378905 (view UCSC Genome Browser custom track) |
| Alignm length: | 952 |
| Alignm identity: | 602 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 153 |
| Conread position: | 1-911 |
| Cow position: | chr5:45182428-45183369 (view UCSC Genome Browser custom track) |
| Alignm length: | 950 |
| Alignm identity: | 582 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 54 |
| Conread position: | 1-911 |
| Cow position: | chr5:48468595-48469536 (view UCSC Genome Browser custom track) |
| Alignm length: | 949 |
| Alignm identity: | 609 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 129 |
| Conread position: | 1-911 |
| Cow position: | chr5:59481936-59480986 (view UCSC Genome Browser custom track) |
| Alignm length: | 957 |
| Alignm identity: | 569 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 122 |
| Conread position: | 1-1022 |
| Cow position: | chr5:61273498-61274511 (view UCSC Genome Browser custom track) |
| Alignm length: | 1038 |
| Alignm identity: | 760 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 45 |
| Conread position: | 1-1149 |
| Cow position: | chr5:49593774-49594923 (view UCSC Genome Browser custom track) |
| Alignm length: | 1191 |
| Alignm identity: | 835 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 156 |
| Conread position: | 2-270 |
| Cow position: | chr5:45699964-45699692 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 21 |
| Conread position: | 2-346 |
| Cow position: | chr5:15682505-15682856 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 222 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 96, 19 |
| Conread position: | 2-447 |
| Cow position: | chr5:46644381-46643951 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 366, 44 |
| Conread position: | 2-534 |
| Cow position: | chr5:48809035-48809550 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 150 |
| Conread position: | 2-562 |
| Cow position: | chr5:1342113-1342673 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 144 |
| Conread position: | 2-597 |
| Cow position: | chr5:24098329-24097742 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 153 |
| Conread position: | 2-597 |
| Cow position: | chr5:64782336-64782929 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 152 |
| Conread position: | 2-603 |
| Cow position: | chr5:46738904-46739520 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 152 |
| Conread position: | 2-610 |
| Cow position: | chr5:7273542-7272944 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 69 |
| Conread position: | 2-627 |
| Cow position: | chr5:3785489-3784871 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 149 |
| Conread position: | 2-631 |
| Cow position: | chr5:49181954-49181365 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 345, 50 |
| Conread position: | 2-633 |
| Cow position: | chr5:26769491-26768884 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 112 |
| Conread position: | 2-633 |
| Cow position: | chr5:28031165-28030570 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 78 |
| Conread position: | 2-634 |
| Cow position: | chr5:2914131-2913501 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 152 |
| Conread position: | 2-634 |
| Cow position: | chr5:3504566-3505191 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 152 |
| Conread position: | 2-634 |
| Cow position: | chr5:4068671-4068037 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 152 |
| Conread position: | 2-634 |
| Cow position: | chr5:34696265-34695635 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 120 |
| Conread position: | 2-634 |
| Cow position: | chr5:49119601-49120227 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 446, 148 |
| Conread position: | 2-634 |
| Cow position: | chr5:54792937-54793566 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 152 |
| Conread position: | 2-634 |
| Cow position: | chr5:57482866-57483494 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 152 |
| Conread position: | 2-634 |
| Cow position: | chr5:59282443-59281809 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 152 |
| Conread position: | 2-696 |
| Cow position: | chr5:2430452-2431151 (view UCSC Genome Browser custom track) |
| Alignm length: | 718 |
| Alignm identity: | 488 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 108 |
| Conread position: | 2-717 |
| Cow position: | chr5:4384907-4384191 (view UCSC Genome Browser custom track) |
| Alignm length: | 731 |
| Alignm identity: | 494 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 142 |
| Conread position: | 2-726 |
| Cow position: | chr5:28006886-28006188 (view UCSC Genome Browser custom track) |
| Alignm length: | 740 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 53 |
| Conread position: | 2-893 |
| Cow position: | chr5:32945561-32944658 (view UCSC Genome Browser custom track) |
| Alignm length: | 926 |
| Alignm identity: | 639 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 152 |
| Conread position: | 2-911 |
| Cow position: | chr5:53714934-53713992 (view UCSC Genome Browser custom track) |
| Alignm length: | 947 |
| Alignm identity: | 597 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 149 |
| Conread position: | 3-665 |
| Cow position: | chr5:46663678-46662990 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 31 |
| Conread position: | 7-172 |
| Cow position: | chr5:27652319-27652480 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 7-210 |
| Cow position: | chr5:29123122-29123325 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 55, 136 |
| Conread position: | 7-282 |
| Cow position: | chr5:16104090-16104366 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 35, 50 |
| Conread position: | 7-333 |
| Cow position: | chr5:58090156-58090478 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 69, 31 |
| Conread position: | 7-473 |
| Cow position: | chr5:49101309-49100869 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 305 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 57, 18 |
| Conread position: | 7-565 |
| Cow position: | chr5:58195678-58195097 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 168 |
| Conread position: | 7-888 |
| Cow position: | chr5:47831428-47832333 (view UCSC Genome Browser custom track) |
| Alignm length: | 923 |
| Alignm identity: | 591 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 125 |
| Conread position: | 7-889 |
| Cow position: | chr5:46775764-46774853 (view UCSC Genome Browser custom track) |
| Alignm length: | 924 |
| Alignm identity: | 592 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 150 |
| Conread position: | 8-500 |
| Cow position: | chr5:76123876-76124357 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 325 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 45, 94 |
| Conread position: | 9-535 |
| Cow position: | chr5:51162589-51162057 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 356 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 45, 74 |
| Conread position: | 10-342 |
| Cow position: | chr5:30088048-30088369 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 231 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 49, 142 |
| Conread position: | 10-720 |
| Cow position: | chr5:32674069-32674777 (view UCSC Genome Browser custom track) |
| Alignm length: | 732 |
| Alignm identity: | 545 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 45 |
| Conread position: | 11-256 |
| Cow position: | chr5:12185332-12185085 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 142 |
| Conread position: | 11-263 |
| Cow position: | chr5:12644202-12644457 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 116, 133 |
| Conread position: | 11-289 |
| Cow position: | chr5:39165126-39165406 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 134 |
| Conread position: | 11-348 |
| Cow position: | chr5:51771674-51772010 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 42, 133 |
| Conread position: | 11-392 |
| Cow position: | chr5:27683098-27683454 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 260 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 257, 44 |
| Conread position: | 11-418 |
| Cow position: | chr5:6519558-6519170 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 11-440 |
| Cow position: | chr5:61020177-61020586 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 284 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 110, 24 |
| Conread position: | 11-493 |
| Cow position: | chr5:6158525-6158996 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 141 |
| Conread position: | 11-518 |
| Cow position: | chr5:58747556-58747061 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 68 |
| Conread position: | 11-538 |
| Cow position: | chr5:24329970-24329467 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 267 |
| Conread position: | 11-629 |
| Cow position: | chr5:29009031-29008444 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 132 |
| Conread position: | 11-631 |
| Cow position: | chr5:52805008-52804419 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 146 |
| Conread position: | 11-634 |
| Cow position: | chr5:37732017-37731385 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 143 |
| Conread position: | 11-634 |
| Cow position: | chr5:55627673-55627056 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 132 |
| Conread position: | 11-662 |
| Cow position: | chr5:4019527-4020206 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 143 |
| Conread position: | 11-887 |
| Cow position: | chr5:10776581-10777482 (view UCSC Genome Browser custom track) |
| Alignm length: | 912 |
| Alignm identity: | 588 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 143 |
| Conread position: | 12-241 |
| Cow position: | chr5:31101925-31102153 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 14, 136 |
| Conread position: | 12-291 |
| Cow position: | chr5:68471892-68472172 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 30, 157 |
| Conread position: | 12-442 |
| Cow position: | chr5:28570368-28569948 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 271 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 58, 52 |
| Conread position: | 12-503 |
| Cow position: | chr5:416052-416534 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 139 |
| Conread position: | 12-551 |
| Cow position: | chr5:30578993-30578460 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 134 |
| Conread position: | 12-560 |
| Cow position: | chr5:23227929-23227399 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 118 |
| Conread position: | 13-327 |
| Cow position: | chr5:58056066-58056382 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 40, 123 |
| Conread position: | 13-370 |
| Cow position: | chr5:59060290-59059929 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 42 |
| Conread position: | 13-626 |
| Cow position: | chr5:12681848-12682448 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 450, 32 |
| Conread position: | 13-797 |
| Cow position: | chr5:41529902-41530682 (view UCSC Genome Browser custom track) |
| Alignm length: | 803 |
| Alignm identity: | 609 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 139 |
| Conread position: | 15-302 |
| Cow position: | chr5:9686746-9687027 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 131 |
| Conread position: | 16-527 |
| Cow position: | chr5:27488686-27488191 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 82 |
| Conread position: | 24-889 |
| Cow position: | chr5:18663906-18663005 (view UCSC Genome Browser custom track) |
| Alignm length: | 906 |
| Alignm identity: | 578 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 130 |
| Conread position: | 24-889 |
| Cow position: | chr5:23960451-23961345 (view UCSC Genome Browser custom track) |
| Alignm length: | 903 |
| Alignm identity: | 579 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 128 |
| Conread position: | 25-621 |
| Cow position: | chr5:46659381-46658775 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 272 |
| Conread position: | 31-890 |
| Cow position: | chr5:10443555-10444439 (view UCSC Genome Browser custom track) |
| Alignm length: | 891 |
| Alignm identity: | 569 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 242, 95 |
| Conread position: | 51-490 |
| Cow position: | chr5:25001296-25001710 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 294 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 412, 14 |
| Conread position: | 51-502 |
| Cow position: | chr5:56858067-56858515 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 74 |
| Conread position: | 51-526 |
| Cow position: | chr5:14659467-14659934 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 300 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 18, 35 |
| Conread position: | 55-1150 |
| Cow position: | chr5:41963306-41964392 (view UCSC Genome Browser custom track) |
| Alignm length: | 1119 |
| Alignm identity: | 810 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 97 |
| Conread position: | 56-323 |
| Cow position: | chr5:23755956-23756219 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 9, 87 |
| Conread position: | 58-304 |
| Cow position: | chr5:54620088-54619849 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 72, 85 |
| Conread position: | 58-539 |
| Cow position: | chr5:27000818-27000355 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 288, 74 |
| Conread position: | 67-347 |
| Cow position: | chr5:73489715-73489992 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 68-749 |
| Cow position: | chr5:42504366-42503663 (view UCSC Genome Browser custom track) |
| Alignm length: | 711 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 82 |
| Conread position: | 73-527 |
| Cow position: | chr5:23687864-23688317 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 394, 80 |
| Conread position: | 114-631 |
| Cow position: | chr5:25207214-25207722 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 28 |
| Conread position: | 115-565 |
| Cow position: | chr5:55149719-55150144 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 314 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 24, 109 |
| Conread position: | 130-401 |
| Cow position: | chr5:29437410-29437675 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 91, 29 |
| Conread position: | 138-891 |
| Cow position: | chr5:46005889-46006638 (view UCSC Genome Browser custom track) |
| Alignm length: | 767 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 427, 15 |
| Conread position: | 151-535 |
| Cow position: | chr5:24151609-24151230 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 267 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 163, 59 |
| Conread position: | 151-535 |
| Cow position: | chr5:27060545-27060920 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 90 |
| Conread position: | 182-911 |
| Cow position: | chr5:4088368-4087612 (view UCSC Genome Browser custom track) |
| Alignm length: | 763 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 257 |
| Conread position: | 182-1146 |
| Cow position: | chr5:29457121-29456169 (view UCSC Genome Browser custom track) |
| Alignm length: | 989 |
| Alignm identity: | 676 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 48 |
| Conread position: | 195-527 |
| Cow position: | chr5:7502900-7503221 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 219 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 261, 12 |
| Conread position: | 197-889 |
| Cow position: | chr5:54936025-54936750 (view UCSC Genome Browser custom track) |
| Alignm length: | 729 |
| Alignm identity: | 444 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 94, 197 |
| Conread position: | 207-633 |
| Cow position: | chr5:41551429-41551845 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 295 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 255, 11 |
| Conread position: | 225-347 |
| Cow position: | chr5:49518215-49518093 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 237-669 |
| Cow position: | chr5:13383857-13384300 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 274 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 230, 297 |
| Conread position: | 237-891 |
| Cow position: | chr5:308156-308822 (view UCSC Genome Browser custom track) |
| Alignm length: | 672 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 367 |
| Conread position: | 241-634 |
| Cow position: | chr5:12184683-12184289 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 267 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 224, 87 |
| Conread position: | 254-614 |
| Cow position: | chr5:49123400-49123756 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 258 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 198, 77 |
| Conread position: | 257-837 |
| Cow position: | chr5:12644680-12645257 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 400 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 125, 32 |
| Conread position: | 266-633 |
| Cow position: | chr5:27652525-27652893 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 242 |
| Conread position: | 266-650 |
| Cow position: | chr5:27569621-27569243 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 82 |
| Conread position: | 277-562 |
| Cow position: | chr5:13607355-13607632 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 189, 72 |
| Conread position: | 289-634 |
| Cow position: | chr5:14500755-14501097 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 123, 60 |
| Conread position: | 295-426 |
| Cow position: | chr5:33345319-33345446 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 298-425 |
| Cow position: | chr5:12901680-12901802 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 317-631 |
| Cow position: | chr5:45699406-45699089 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 175 |
| Conread position: | 351-911 |
| Cow position: | chr5:35299090-35298520 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 355 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 116, 235 |
| Conread position: | 538-849 |
| Cow position: | chr5:46631400-46631715 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 227 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 23, 109 |
| Conread position: | 560-1140 |
| Cow position: | chr5:27061503-27062102 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 10 |
| Conread position: | 628-888 |
| Cow position: | chr5:23688504-23688750 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 629-1146 |
| Cow position: | chr5:28044909-28045440 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 111 |
| Conread position: | 714-1147 |
| Cow position: | chr5:46658158-46657713 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 195 |
| Conread position: | 761-1100 |
| Cow position: | chr5:12682555-12682881 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 244 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 263, 60 |
| Conread position: | 789-1142 |
| Cow position: | chr5:41979120-41978761 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 255 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 152, 48 |
| Conread position: | 829-1145 |
| Cow position: | chr5:56562708-56563036 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 229 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 167, 67 |
| Conread position: | 865-1139 |
| Cow position: | chr5:6527775-6527496 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 73, 36 |
| Conread position: | 902-1133 |
| Cow position: | chr5:26170735-26170501 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 110, 160 |
| Conread position: | 930-1134 |
| Cow position: | chr5:32734662-32734874 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 965-1140 |
| Cow position: | chr5:39248104-39248285 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 44, 0 |
Show alignments to all cow chromosomes.