Cow genome map

Conread name: Ss1.1-Tra1-TCH01E040098.5

Conread position: 1-167
Cow position:
Alignm length: 168
Alignm identity: 127
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 80, 57

Conread position: 1-186
Cow position:
Alignm length: 188
Alignm identity: 139
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 63, 96

Conread position: 1-237
Cow position:
Alignm length: 242
Alignm identity: 183
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 31, 154

Conread position: 1-250
Cow position:
Alignm length: 254
Alignm identity: 161
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 51, 144

Conread position: 1-270
Cow position:
Alignm length: 272
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 120

Conread position: 1-272
Cow position:
Alignm length: 278
Alignm identity: 199
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 49, 146

Conread position: 1-275
Cow position:
Alignm length: 277
Alignm identity: 183
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 69, 63

Conread position: 1-291
Cow position:
Alignm length: 299
Alignm identity: 206
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 138, 252

Conread position: 1-291
Cow position:
Alignm length: 291
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 0

Conread position: 1-314
Cow position:
Alignm length: 319
Alignm identity: 231
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 25, 9

Conread position: 1-314
Cow position:
Alignm length: 320
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 150

Conread position: 1-318
Cow position:
Alignm length: 322
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 146

Conread position: 1-409
Cow position:
Alignm length: 414
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 110

Conread position: 1-414
Cow position:
Alignm length: 420
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 99

Conread position: 1-427
Cow position:
Alignm length: 431
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 52

Conread position: 1-458
Cow position:
Alignm length: 462
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 153

Conread position: 1-466
Cow position:
Alignm length: 467
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 278, 51

Conread position: 1-518
Cow position:
Alignm length: 519
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 455, 67

Conread position: 1-535
Cow position:
Alignm length: 548
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 155

Conread position: 1-543
Cow position:
Alignm length: 550
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 58

Conread position: 1-570
Cow position:
Alignm length: 603
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 87

Conread position: 1-634
Cow position:
Alignm length: 646
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 153

Conread position: 1-657
Cow position:
Alignm length: 670
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 465, 52

Conread position: 1-749
Cow position:
Alignm length: 786
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 153

Conread position: 1-825
Cow position:
Alignm length: 863
Alignm identity: 551
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 153

Conread position: 1-834
Cow position:
Alignm length: 874
Alignm identity: 571
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 153

Conread position: 1-888
Cow position:
Alignm length: 926
Alignm identity: 583
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 164

Conread position: 1-889
Cow position:
Alignm length: 919
Alignm identity: 593
Alignm E-value: 0
Alignm gaps (pig, cow): 331, 33

Conread position: 1-911
Cow position:
Alignm length: 939
Alignm identity: 599
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 153

Conread position: 2-253
Cow position:
Alignm length: 254
Alignm identity: 186
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 68, 150

Conread position: 2-261
Cow position:
Alignm length: 264
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 152

Conread position: 2-283
Cow position:
Alignm length: 283
Alignm identity: 198
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 62, 136

Conread position: 2-406
Cow position:
Alignm length: 411
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 154

Conread position: 2-474
Cow position:
Alignm length: 476
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 151

Conread position: 2-503
Cow position:
Alignm length: 523
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 347, 49

Conread position: 2-518
Cow position:
Alignm length: 532
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 147

Conread position: 2-545
Cow position:
Alignm length: 553
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 153

Conread position: 2-545
Cow position:
Alignm length: 554
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 146

Conread position: 2-585
Cow position:
Alignm length: 600
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 97

Conread position: 2-613
Cow position:
Alignm length: 625
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 152

Conread position: 2-614
Cow position:
Alignm length: 632
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 119

Conread position: 2-614
Cow position:
Alignm length: 627
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 442, 65

Conread position: 2-633
Cow position:
Alignm length: 645
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 112

Conread position: 2-634
Cow position:
Alignm length: 649
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 152

Conread position: 2-634
Cow position:
Alignm length: 650
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 152

Conread position: 2-634
Cow position:
Alignm length: 656
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 82

Conread position: 2-682
Cow position:
Alignm length: 697
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 54

Conread position: 2-889
Cow position:
Alignm length: 925
Alignm identity: 589
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 142

Conread position: 3-478
Cow position:
Alignm length: 486
Alignm identity: 301
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 39, 122

Conread position: 5-634
Cow position:
Alignm length: 642
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 90

Conread position: 6-365
Cow position:
Alignm length: 365
Alignm identity: 244
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 43, 140

Conread position: 6-586
Cow position:
Alignm length: 587
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 50

Conread position: 7-307
Cow position:
Alignm length: 303
Alignm identity: 198
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 43, 77

Conread position: 9-1140
Cow position:
Alignm length: 1173
Alignm identity: 853
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 18

Conread position: 10-299
Cow position:
Alignm length: 292
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 47

Conread position: 10-314
Cow position:
Alignm length: 310
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 138

Conread position: 10-411
Cow position:
Alignm length: 408
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 29

Conread position: 11-189
Cow position:
Alignm length: 181
Alignm identity: 140
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 42, 134

Conread position: 11-256
Cow position:
Alignm length: 251
Alignm identity: 183
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 51, 143

Conread position: 11-270
Cow position:
Alignm length: 268
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 175

Conread position: 11-276
Cow position:
Alignm length: 267
Alignm identity: 171
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 250, 59

Conread position: 11-277
Cow position:
Alignm length: 271
Alignm identity: 186
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 38, 253

Conread position: 11-285
Cow position:
Alignm length: 279
Alignm identity: 187
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 46, 76

Conread position: 11-287
Cow position:
Alignm length: 283
Alignm identity: 192
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 38, 48

Conread position: 11-307
Cow position:
Alignm length: 305
Alignm identity: 211
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 223, 139

Conread position: 11-314
Cow position:
Alignm length: 324
Alignm identity: 226
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 29, 0

Conread position: 11-368
Cow position:
Alignm length: 361
Alignm identity: 228
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 311, 34

Conread position: 11-493
Cow position:
Alignm length: 491
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 250, 38

Conread position: 11-514
Cow position:
Alignm length: 518
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 266

Conread position: 11-530
Cow position:
Alignm length: 536
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 82

Conread position: 11-534
Cow position:
Alignm length: 537
Alignm identity: 354
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 53, 14

Conread position: 11-625
Cow position:
Alignm length: 647
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 48

Conread position: 11-634
Cow position:
Alignm length: 641
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 136

Conread position: 11-881
Cow position:
Alignm length: 901
Alignm identity: 646
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 145

Conread position: 11-889
Cow position:
Alignm length: 916
Alignm identity: 587
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 23

Conread position: 11-889
Cow position:
Alignm length: 916
Alignm identity: 594
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 23

Conread position: 11-949
Cow position:
Alignm length: 957
Alignm identity: 697
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 12

Conread position: 12-307
Cow position:
Alignm length: 300
Alignm identity: 198
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 42, 94

Conread position: 13-633
Cow position:
Alignm length: 634
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 39

Conread position: 15-454
Cow position:
Alignm length: 441
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 18

Conread position: 15-603
Cow position:
Alignm length: 604
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 132

Conread position: 17-325
Cow position:
Alignm length: 313
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 134

Conread position: 28-553
Cow position:
Alignm length: 539
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 118

Conread position: 30-634
Cow position:
Alignm length: 623
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 127

Conread position: 33-637
Cow position:
Alignm length: 616
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 7

Conread position: 49-449
Cow position:
Alignm length: 404
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 6

Conread position: 55-634
Cow position:
Alignm length: 595
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 96

Conread position: 55-889
Cow position:
Alignm length: 864
Alignm identity: 545
Alignm E-value: 0
Alignm gaps (pig, cow): 236, 7

Conread position: 56-276
Cow position:
Alignm length: 221
Alignm identity: 157
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 38, 0

Conread position: 56-287
Cow position:
Alignm length: 233
Alignm identity: 171
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 9, 98

Conread position: 57-503
Cow position:
Alignm length: 452
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 359, 13

Conread position: 61-302
Cow position:
Alignm length: 246
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 236

Conread position: 63-1136
Cow position:
Alignm length: 1086
Alignm identity: 765
Alignm E-value: 0
Alignm gaps (pig, cow): 310, 86

Conread position: 87-542
Cow position:
Alignm length: 457
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 369, 63

Conread position: 101-1084
Cow position:
Alignm length: 999
Alignm identity: 771
Alignm E-value: 0
Alignm gaps (pig, cow): 365, 49

Conread position: 102-535
Cow position:
Alignm length: 435
Alignm identity: 284
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 354, 50

Conread position: 102-911
Cow position:
Alignm length: 841
Alignm identity: 523
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 49

Conread position: 102-911
Cow position:
Alignm length: 848
Alignm identity: 531
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 49

Conread position: 109-555
Cow position:
Alignm length: 451
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 357, 41

Conread position: 150-693
Cow position:
Alignm length: 556
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 145

Conread position: 156-1144
Cow position:
Alignm length: 1007
Alignm identity: 692
Alignm E-value: 0
Alignm gaps (pig, cow): 411, 137

Conread position: 169-370
Cow position:
Alignm length: 202
Alignm identity: 137
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 97, 0

Conread position: 182-613
Cow position:
Alignm length: 440
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 274, 149

Conread position: 190-485
Cow position:
Alignm length: 300
Alignm identity: 202
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 277, 159

Conread position: 193-565
Cow position:
Alignm length: 398
Alignm identity: 262
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 98, 0

Conread position: 193-603
Cow position:
Alignm length: 427
Alignm identity: 293
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 54, 139

Conread position: 206-493
Cow position:
Alignm length: 293
Alignm identity: 199
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 257, 60

Conread position: 206-633
Cow position:
Alignm length: 439
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 18

Conread position: 211-634
Cow position:
Alignm length: 435
Alignm identity: 289
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 237, 70

Conread position: 219-890
Cow position:
Alignm length: 692
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 116

Conread position: 220-631
Cow position:
Alignm length: 434
Alignm identity: 270
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 144, 17

Conread position: 246-454
Cow position:
Alignm length: 209
Alignm identity: 151
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 46, 0

Conread position: 250-446
Cow position:
Alignm length: 201
Alignm identity: 144
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 141, 43

Conread position: 253-634
Cow position:
Alignm length: 400
Alignm identity: 258
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 43, 300

Conread position: 277-631
Cow position:
Alignm length: 369
Alignm identity: 249
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 133, 29

Conread position: 293-631
Cow position:
Alignm length: 344
Alignm identity: 249
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 168, 25

Conread position: 304-717
Cow position:
Alignm length: 429
Alignm identity: 281
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 124, 42

Conread position: 306-672
Cow position:
Alignm length: 383
Alignm identity: 250
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 11, 47

Conread position: 321-588
Cow position:
Alignm length: 273
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 203

Conread position: 330-1140
Cow position:
Alignm length: 834
Alignm identity: 576
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 175

Conread position: 344-657
Cow position:
Alignm length: 323
Alignm identity: 219
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 112, 7

Conread position: 351-1117
Cow position:
Alignm length: 789
Alignm identity: 543
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 168

Conread position: 360-631
Cow position:
Alignm length: 275
Alignm identity: 185
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 96, 153

Conread position: 370-831
Cow position:
Alignm length: 480
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 271

Conread position: 390-890
Cow position:
Alignm length: 519
Alignm identity: 323
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 71, 156

Conread position: 532-1140
Cow position:
Alignm length: 637
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 246

Conread position: 536-762
Cow position:
Alignm length: 237
Alignm identity: 173
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 25, 0

Conread position: 542-1149
Cow position:
Alignm length: 638
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 248

Conread position: 628-979
Cow position:
Alignm length: 352
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 0

Conread position: 630-1138
Cow position:
Alignm length: 521
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 136

Conread position: 644-1136
Cow position:
Alignm length: 501
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 16

Conread position: 730-1148
Cow position:
Alignm length: 431
Alignm identity: 275
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 25, 53

Conread position: 814-1146
Cow position:
Alignm length: 338
Alignm identity: 237
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 210, 60

Conread position: 834-999
Cow position:
Alignm length: 166
Alignm identity: 119
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 68, 0

Conread position: 890-1149
Cow position:
Alignm length: 268
Alignm identity: 178
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 119, 172

Conread position: 902-1134
Cow position:
Alignm length: 241
Alignm identity: 163
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 104, 0

Show alignments to all cow chromosomes.