Cow genome map

Conread name: Ss1.1-Tra1-TCH01E040098.5

Conread position: 1-119
Cow position:
Alignm length: 123
Alignm identity: 97
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 51, 0

Conread position: 1-188
Cow position:
Alignm length: 194
Alignm identity: 142
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 59, 141

Conread position: 1-214
Cow position:
Alignm length: 217
Alignm identity: 147
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 157, 28

Conread position: 1-224
Cow position:
Alignm length: 225
Alignm identity: 162
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 63, 143

Conread position: 1-269
Cow position:
Alignm length: 274
Alignm identity: 199
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 51, 123

Conread position: 1-287
Cow position:
Alignm length: 288
Alignm identity: 200
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 60, 150

Conread position: 1-370
Cow position:
Alignm length: 374
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 153

Conread position: 1-524
Cow position:
Alignm length: 539
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 152

Conread position: 1-524
Cow position:
Alignm length: 540
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 155

Conread position: 1-531
Cow position:
Alignm length: 532
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 527, 88

Conread position: 1-535
Cow position:
Alignm length: 549
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 158

Conread position: 1-536
Cow position:
Alignm length: 542
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 5

Conread position: 1-565
Cow position:
Alignm length: 593
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 153

Conread position: 1-585
Cow position:
Alignm length: 599
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 140

Conread position: 1-631
Cow position:
Alignm length: 651
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 202

Conread position: 1-631
Cow position:
Alignm length: 646
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 38

Conread position: 1-633
Cow position:
Alignm length: 649
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 38

Conread position: 1-657
Cow position:
Alignm length: 672
Alignm identity: 460
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 153

Conread position: 1-756
Cow position:
Alignm length: 794
Alignm identity: 511
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 144

Conread position: 1-837
Cow position:
Alignm length: 871
Alignm identity: 563
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 23

Conread position: 1-871
Cow position:
Alignm length: 912
Alignm identity: 597
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 144

Conread position: 1-888
Cow position:
Alignm length: 914
Alignm identity: 564
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 146

Conread position: 1-889
Cow position:
Alignm length: 907
Alignm identity: 575
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 153

Conread position: 1-889
Cow position:
Alignm length: 923
Alignm identity: 598
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 153

Conread position: 1-889
Cow position:
Alignm length: 925
Alignm identity: 598
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 154

Conread position: 1-889
Cow position:
Alignm length: 924
Alignm identity: 605
Alignm E-value: 0
Alignm gaps (pig, cow): 327, 149

Conread position: 1-889
Cow position:
Alignm length: 926
Alignm identity: 601
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 466

Conread position: 1-911
Cow position:
Alignm length: 954
Alignm identity: 601
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 54

Conread position: 1-911
Cow position:
Alignm length: 950
Alignm identity: 598
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 150

Conread position: 1-911
Cow position:
Alignm length: 951
Alignm identity: 615
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 104

Conread position: 1-911
Cow position:
Alignm length: 947
Alignm identity: 604
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 150

Conread position: 1-1136
Cow position:
Alignm length: 1168
Alignm identity: 833
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 20

Conread position: 2-191
Cow position:
Alignm length: 190
Alignm identity: 138
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 60, 0

Conread position: 2-198
Cow position:
Alignm length: 202
Alignm identity: 144
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 51, 144

Conread position: 2-247
Cow position:
Alignm length: 259
Alignm identity: 181
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 51, 144

Conread position: 2-251
Cow position:
Alignm length: 254
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 153

Conread position: 2-474
Cow position:
Alignm length: 477
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 293

Conread position: 2-496
Cow position:
Alignm length: 503
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 152

Conread position: 2-503
Cow position:
Alignm length: 507
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 149

Conread position: 2-525
Cow position:
Alignm length: 534
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 152

Conread position: 2-534
Cow position:
Alignm length: 542
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 152

Conread position: 2-539
Cow position:
Alignm length: 540
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 468, 24

Conread position: 2-564
Cow position:
Alignm length: 579
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 433, 141

Conread position: 2-566
Cow position:
Alignm length: 576
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 152

Conread position: 2-613
Cow position:
Alignm length: 627
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 148

Conread position: 2-616
Cow position:
Alignm length: 631
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 151

Conread position: 2-634
Cow position:
Alignm length: 648
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 95

Conread position: 2-634
Cow position:
Alignm length: 648
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 152

Conread position: 2-634
Cow position:
Alignm length: 651
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 152

Conread position: 2-634
Cow position:
Alignm length: 649
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 145

Conread position: 2-634
Cow position:
Alignm length: 651
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 152

Conread position: 2-634
Cow position:
Alignm length: 644
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 151

Conread position: 2-696
Cow position:
Alignm length: 703
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 450, 60

Conread position: 2-837
Cow position:
Alignm length: 866
Alignm identity: 588
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 304

Conread position: 2-889
Cow position:
Alignm length: 921
Alignm identity: 577
Alignm E-value: 0
Alignm gaps (pig, cow): 278, 52

Conread position: 3-291
Cow position:
Alignm length: 291
Alignm identity: 194
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 73, 13

Conread position: 7-634
Cow position:
Alignm length: 644
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 26

Conread position: 7-889
Cow position:
Alignm length: 926
Alignm identity: 600
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 161

Conread position: 11-287
Cow position:
Alignm length: 280
Alignm identity: 199
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 41, 135

Conread position: 11-321
Cow position:
Alignm length: 318
Alignm identity: 198
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 52, 108

Conread position: 11-321
Cow position:
Alignm length: 316
Alignm identity: 201
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 59, 54

Conread position: 11-345
Cow position:
Alignm length: 339
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 119

Conread position: 11-469
Cow position:
Alignm length: 465
Alignm identity: 313
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 43, 135

Conread position: 11-503
Cow position:
Alignm length: 498
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 142

Conread position: 11-503
Cow position:
Alignm length: 521
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 136

Conread position: 11-518
Cow position:
Alignm length: 516
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 143

Conread position: 11-527
Cow position:
Alignm length: 527
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 28

Conread position: 11-529
Cow position:
Alignm length: 522
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 455, 54

Conread position: 11-534
Cow position:
Alignm length: 533
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 143

Conread position: 11-567
Cow position:
Alignm length: 571
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 107

Conread position: 11-603
Cow position:
Alignm length: 618
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 143

Conread position: 11-603
Cow position:
Alignm length: 606
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 143

Conread position: 11-631
Cow position:
Alignm length: 630
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 459, 41

Conread position: 11-633
Cow position:
Alignm length: 632
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 28

Conread position: 11-634
Cow position:
Alignm length: 639
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 143

Conread position: 11-634
Cow position:
Alignm length: 636
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 143

Conread position: 11-911
Cow position:
Alignm length: 942
Alignm identity: 602
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 119

Conread position: 11-1140
Cow position:
Alignm length: 1156
Alignm identity: 803
Alignm E-value: 0
Alignm gaps (pig, cow): 412, 35

Conread position: 12-493
Cow position:
Alignm length: 488
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 86

Conread position: 12-527
Cow position:
Alignm length: 517
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 58

Conread position: 12-621
Cow position:
Alignm length: 620
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 236

Conread position: 12-634
Cow position:
Alignm length: 642
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 142

Conread position: 13-594
Cow position:
Alignm length: 588
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 13-633
Cow position:
Alignm length: 635
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 131

Conread position: 14-633
Cow position:
Alignm length: 644
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 132

Conread position: 15-911
Cow position:
Alignm length: 911
Alignm identity: 569
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 139

Conread position: 16-317
Cow position:
Alignm length: 307
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 16-446
Cow position:
Alignm length: 435
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 139

Conread position: 16-634
Cow position:
Alignm length: 635
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 139

Conread position: 17-289
Cow position:
Alignm length: 273
Alignm identity: 174
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 124, 0

Conread position: 22-532
Cow position:
Alignm length: 533
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 254

Conread position: 23-613
Cow position:
Alignm length: 612
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 130

Conread position: 28-625
Cow position:
Alignm length: 610
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 438, 122

Conread position: 35-520
Cow position:
Alignm length: 487
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 421, 21

Conread position: 35-633
Cow position:
Alignm length: 613
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 119

Conread position: 50-288
Cow position:
Alignm length: 239
Alignm identity: 164
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 9, 0

Conread position: 58-462
Cow position:
Alignm length: 405
Alignm identity: 264
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 27, 0

Conread position: 58-466
Cow position:
Alignm length: 415
Alignm identity: 279
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 84, 105

Conread position: 71-603
Cow position:
Alignm length: 543
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 377, 79

Conread position: 98-616
Cow position:
Alignm length: 524
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 365, 52

Conread position: 101-300
Cow position:
Alignm length: 200
Alignm identity: 147
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 49, 0

Conread position: 114-614
Cow position:
Alignm length: 513
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 330, 36

Conread position: 120-705
Cow position:
Alignm length: 601
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 30

Conread position: 128-635
Cow position:
Alignm length: 521
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 320, 22

Conread position: 128-696
Cow position:
Alignm length: 582
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 328, 22

Conread position: 132-422
Cow position:
Alignm length: 293
Alignm identity: 194
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 135, 18

Conread position: 138-260
Cow position:
Alignm length: 124
Alignm identity: 97
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 93, 15

Conread position: 142-627
Cow position:
Alignm length: 497
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 75

Conread position: 153-671
Cow position:
Alignm length: 552
Alignm identity: 348
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 127, 500

Conread position: 158-702
Cow position:
Alignm length: 553
Alignm identity: 346
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 309, 129

Conread position: 178-534
Cow position:
Alignm length: 361
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 266, 153

Conread position: 183-603
Cow position:
Alignm length: 435
Alignm identity: 296
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 265, 148

Conread position: 203-691
Cow position:
Alignm length: 498
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 264, 90

Conread position: 240-488
Cow position:
Alignm length: 250
Alignm identity: 171
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 216, 25

Conread position: 243-571
Cow position:
Alignm length: 333
Alignm identity: 231
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 223, 46

Conread position: 256-891
Cow position:
Alignm length: 648
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 70

Conread position: 263-666
Cow position:
Alignm length: 413
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 30

Conread position: 332-889
Cow position:
Alignm length: 569
Alignm identity: 351
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 49, 19

Conread position: 344-888
Cow position:
Alignm length: 559
Alignm identity: 350
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 123, 397

Conread position: 351-889
Cow position:
Alignm length: 554
Alignm identity: 340
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 116, 449

Conread position: 351-889
Cow position:
Alignm length: 552
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 452

Conread position: 351-889
Cow position:
Alignm length: 552
Alignm identity: 342
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 116, 452

Conread position: 376-887
Cow position:
Alignm length: 521
Alignm identity: 325
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 82, 56

Conread position: 516-1149
Cow position:
Alignm length: 667
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 87

Conread position: 530-837
Cow position:
Alignm length: 319
Alignm identity: 221
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 27, 14

Conread position: 530-1137
Cow position:
Alignm length: 654
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 408

Conread position: 532-1077
Cow position:
Alignm length: 574
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 127

Conread position: 532-1149
Cow position:
Alignm length: 659
Alignm identity: 421
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 29, 51

Conread position: 534-1014
Cow position:
Alignm length: 491
Alignm identity: 326
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 30, 78

Conread position: 544-724
Cow position:
Alignm length: 184
Alignm identity: 139
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 38, 169

Conread position: 544-752
Cow position:
Alignm length: 219
Alignm identity: 159
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 17, 130

Conread position: 628-837
Cow position:
Alignm length: 212
Alignm identity: 155
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 123, 143

Conread position: 645-880
Cow position:
Alignm length: 239
Alignm identity: 161
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 64, 21

Conread position: 705-857
Cow position:
Alignm length: 155
Alignm identity: 115
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 47, 0

Conread position: 717-1149
Cow position:
Alignm length: 440
Alignm identity: 283
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 36, 102

Conread position: 730-1068
Cow position:
Alignm length: 345
Alignm identity: 238
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 25, 44

Conread position: 743-1140
Cow position:
Alignm length: 415
Alignm identity: 272
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 12, 153

Conread position: 805-988
Cow position:
Alignm length: 186
Alignm identity: 134
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 175, 97

Conread position: 812-1146
Cow position:
Alignm length: 342
Alignm identity: 231
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 121, 46

Conread position: 813-1146
Cow position:
Alignm length: 341
Alignm identity: 222
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 199, 73

Conread position: 820-1146
Cow position:
Alignm length: 337
Alignm identity: 225
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 123, 11

Conread position: 859-1145
Cow position:
Alignm length: 288
Alignm identity: 188
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 160, 45

Conread position: 863-1140
Cow position:
Alignm length: 283
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 35

Conread position: 902-1113
Cow position:
Alignm length: 220
Alignm identity: 151
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 108, 0

Conread position: 902-1141
Cow position:
Alignm length: 248
Alignm identity: 168
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 107, 0

Conread position: 902-1148
Cow position:
Alignm length: 255
Alignm identity: 171
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 108, 208

Show alignments to all cow chromosomes.