Cow genome map

Conread name: Ss1.1-Tra1-TCH01E040098.5

Conread position: 1-174
Cow position:
Alignm length: 178
Alignm identity: 131
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 64, 153

Conread position: 1-258
Cow position:
Alignm length: 262
Alignm identity: 189
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 63, 153

Conread position: 1-264
Cow position:
Alignm length: 269
Alignm identity: 190
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 56, 30

Conread position: 1-269
Cow position:
Alignm length: 271
Alignm identity: 183
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 59, 9

Conread position: 1-287
Cow position:
Alignm length: 288
Alignm identity: 206
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 61, 19

Conread position: 1-288
Cow position:
Alignm length: 292
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 146

Conread position: 1-307
Cow position:
Alignm length: 313
Alignm identity: 225
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 51, 82

Conread position: 1-307
Cow position:
Alignm length: 310
Alignm identity: 214
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 50, 55

Conread position: 1-326
Cow position:
Alignm length: 331
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 154

Conread position: 1-326
Cow position:
Alignm length: 335
Alignm identity: 221
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 61, 144

Conread position: 1-421
Cow position:
Alignm length: 425
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 172

Conread position: 1-493
Cow position:
Alignm length: 498
Alignm identity: 319
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 68, 126

Conread position: 1-515
Cow position:
Alignm length: 521
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 465, 142

Conread position: 1-631
Cow position:
Alignm length: 642
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 56

Conread position: 1-633
Cow position:
Alignm length: 650
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 154

Conread position: 1-660
Cow position:
Alignm length: 676
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 153

Conread position: 1-702
Cow position:
Alignm length: 737
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 153

Conread position: 1-702
Cow position:
Alignm length: 738
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 153

Conread position: 1-825
Cow position:
Alignm length: 863
Alignm identity: 546
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 150

Conread position: 1-826
Cow position:
Alignm length: 866
Alignm identity: 546
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 163

Conread position: 1-888
Cow position:
Alignm length: 928
Alignm identity: 596
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 154

Conread position: 1-890
Cow position:
Alignm length: 915
Alignm identity: 639
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 132

Conread position: 1-891
Cow position:
Alignm length: 927
Alignm identity: 599
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 153

Conread position: 1-891
Cow position:
Alignm length: 926
Alignm identity: 590
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 146

Conread position: 1-911
Cow position:
Alignm length: 948
Alignm identity: 619
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 153

Conread position: 1-911
Cow position:
Alignm length: 952
Alignm identity: 607
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 153

Conread position: 2-248
Cow position:
Alignm length: 251
Alignm identity: 183
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 51, 151

Conread position: 2-279
Cow position:
Alignm length: 281
Alignm identity: 190
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 50, 8

Conread position: 2-282
Cow position:
Alignm length: 288
Alignm identity: 206
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 9, 155

Conread position: 2-314
Cow position:
Alignm length: 320
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 155

Conread position: 2-371
Cow position:
Alignm length: 374
Alignm identity: 194
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 51, 152

Conread position: 2-493
Cow position:
Alignm length: 508
Alignm identity: 321
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 113, 50

Conread position: 2-566
Cow position:
Alignm length: 575
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 149

Conread position: 2-597
Cow position:
Alignm length: 609
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 86

Conread position: 2-614
Cow position:
Alignm length: 629
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 118

Conread position: 2-633
Cow position:
Alignm length: 650
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 44

Conread position: 2-634
Cow position:
Alignm length: 653
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 71

Conread position: 2-634
Cow position:
Alignm length: 647
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 149

Conread position: 2-634
Cow position:
Alignm length: 646
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 446, 44

Conread position: 2-634
Cow position:
Alignm length: 643
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 288, 21

Conread position: 2-634
Cow position:
Alignm length: 652
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 41

Conread position: 2-634
Cow position:
Alignm length: 650
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 152

Conread position: 2-634
Cow position:
Alignm length: 656
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 38

Conread position: 2-634
Cow position:
Alignm length: 649
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 149

Conread position: 2-634
Cow position:
Alignm length: 647
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 152

Conread position: 2-634
Cow position:
Alignm length: 650
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 152

Conread position: 2-634
Cow position:
Alignm length: 645
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 41

Conread position: 2-634
Cow position:
Alignm length: 652
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 14

Conread position: 2-635
Cow position:
Alignm length: 651
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 152

Conread position: 2-635
Cow position:
Alignm length: 649
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 60

Conread position: 2-911
Cow position:
Alignm length: 933
Alignm identity: 579
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 147

Conread position: 3-228
Cow position:
Alignm length: 231
Alignm identity: 155
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 60, 154

Conread position: 3-476
Cow position:
Alignm length: 491
Alignm identity: 309
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 45, 88

Conread position: 3-630
Cow position:
Alignm length: 641
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 345

Conread position: 7-648
Cow position:
Alignm length: 664
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 161

Conread position: 7-705
Cow position:
Alignm length: 733
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 147

Conread position: 11-257
Cow position:
Alignm length: 248
Alignm identity: 185
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 53, 44

Conread position: 11-264
Cow position:
Alignm length: 255
Alignm identity: 165
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 54, 132

Conread position: 11-269
Cow position:
Alignm length: 264
Alignm identity: 190
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 40, 45

Conread position: 11-270
Cow position:
Alignm length: 264
Alignm identity: 198
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 42, 121

Conread position: 11-270
Cow position:
Alignm length: 263
Alignm identity: 176
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 38, 61

Conread position: 11-286
Cow position:
Alignm length: 278
Alignm identity: 203
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 53, 100

Conread position: 11-298
Cow position:
Alignm length: 291
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 134

Conread position: 11-314
Cow position:
Alignm length: 309
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 143

Conread position: 11-327
Cow position:
Alignm length: 326
Alignm identity: 220
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 41, 310

Conread position: 11-366
Cow position:
Alignm length: 365
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 98

Conread position: 11-370
Cow position:
Alignm length: 365
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 89

Conread position: 11-380
Cow position:
Alignm length: 377
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 142

Conread position: 11-446
Cow position:
Alignm length: 440
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 142

Conread position: 11-522
Cow position:
Alignm length: 523
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 143

Conread position: 11-525
Cow position:
Alignm length: 528
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 143

Conread position: 11-539
Cow position:
Alignm length: 536
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 110

Conread position: 11-614
Cow position:
Alignm length: 618
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 143

Conread position: 11-632
Cow position:
Alignm length: 636
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 68

Conread position: 11-634
Cow position:
Alignm length: 637
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 5

Conread position: 11-635
Cow position:
Alignm length: 643
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 143

Conread position: 11-681
Cow position:
Alignm length: 697
Alignm identity: 514
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 141

Conread position: 11-888
Cow position:
Alignm length: 915
Alignm identity: 589
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 89

Conread position: 11-911
Cow position:
Alignm length: 948
Alignm identity: 599
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 45

Conread position: 12-529
Cow position:
Alignm length: 528
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 126

Conread position: 12-614
Cow position:
Alignm length: 622
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 142

Conread position: 13-326
Cow position:
Alignm length: 320
Alignm identity: 225
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 36, 12

Conread position: 13-326
Cow position:
Alignm length: 316
Alignm identity: 200
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 41, 46

Conread position: 13-431
Cow position:
Alignm length: 425
Alignm identity: 284
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 31, 90

Conread position: 13-536
Cow position:
Alignm length: 537
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 133

Conread position: 13-634
Cow position:
Alignm length: 643
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 47

Conread position: 14-911
Cow position:
Alignm length: 952
Alignm identity: 610
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 140

Conread position: 16-889
Cow position:
Alignm length: 922
Alignm identity: 577
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 139

Conread position: 16-889
Cow position:
Alignm length: 911
Alignm identity: 579
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 138

Conread position: 17-256
Cow position:
Alignm length: 254
Alignm identity: 175
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 36, 76

Conread position: 22-435
Cow position:
Alignm length: 420
Alignm identity: 271
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 30, 124

Conread position: 24-565
Cow position:
Alignm length: 552
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 5

Conread position: 31-834
Cow position:
Alignm length: 836
Alignm identity: 523
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 116

Conread position: 41-256
Cow position:
Alignm length: 221
Alignm identity: 166
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 98, 146

Conread position: 55-271
Cow position:
Alignm length: 217
Alignm identity: 165
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 95, 0

Conread position: 55-614
Cow position:
Alignm length: 572
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 401, 95

Conread position: 56-291
Cow position:
Alignm length: 236
Alignm identity: 178
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 94, 0

Conread position: 58-524
Cow position:
Alignm length: 471
Alignm identity: 299
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 87, 104

Conread position: 85-303
Cow position:
Alignm length: 230
Alignm identity: 157
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 56, 50

Conread position: 100-634
Cow position:
Alignm length: 553
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 50

Conread position: 129-631
Cow position:
Alignm length: 519
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 337, 21

Conread position: 148-518
Cow position:
Alignm length: 375
Alignm identity: 253
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 172, 85

Conread position: 154-469
Cow position:
Alignm length: 317
Alignm identity: 208
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 21, 27

Conread position: 160-535
Cow position:
Alignm length: 387
Alignm identity: 253
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 239, 172

Conread position: 207-633
Cow position:
Alignm length: 432
Alignm identity: 290
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 88, 11

Conread position: 220-1146
Cow position:
Alignm length: 962
Alignm identity: 686
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 63

Conread position: 237-669
Cow position:
Alignm length: 447
Alignm identity: 278
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 99, 115

Conread position: 244-634
Cow position:
Alignm length: 402
Alignm identity: 272
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 204, 87

Conread position: 248-522
Cow position:
Alignm length: 280
Alignm identity: 195
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 219, 49

Conread position: 253-614
Cow position:
Alignm length: 380
Alignm identity: 252
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 64, 74

Conread position: 256-911
Cow position:
Alignm length: 671
Alignm identity: 403
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 211, 17

Conread position: 263-533
Cow position:
Alignm length: 275
Alignm identity: 188
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 203, 52

Conread position: 290-889
Cow position:
Alignm length: 616
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 63

Conread position: 296-634
Cow position:
Alignm length: 349
Alignm identity: 232
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 138, 29

Conread position: 300-633
Cow position:
Alignm length: 344
Alignm identity: 244
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 166, 49

Conread position: 302-888
Cow position:
Alignm length: 602
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 152

Conread position: 333-605
Cow position:
Alignm length: 282
Alignm identity: 189
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 130, 191

Conread position: 347-891
Cow position:
Alignm length: 562
Alignm identity: 343
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 120, 466

Conread position: 351-911
Cow position:
Alignm length: 576
Alignm identity: 350
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 116, 453

Conread position: 352-829
Cow position:
Alignm length: 489
Alignm identity: 298
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 115, 127

Conread position: 358-634
Cow position:
Alignm length: 288
Alignm identity: 190
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 90, 235

Conread position: 358-634
Cow position:
Alignm length: 290
Alignm identity: 191
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 86, 237

Conread position: 372-911
Cow position:
Alignm length: 555
Alignm identity: 339
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 90, 162

Conread position: 441-920
Cow position:
Alignm length: 493
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 81

Conread position: 466-738
Cow position:
Alignm length: 277
Alignm identity: 185
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 102, 113

Conread position: 466-752
Cow position:
Alignm length: 294
Alignm identity: 192
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 103, 137

Conread position: 546-967
Cow position:
Alignm length: 438
Alignm identity: 297
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 15, 9

Conread position: 612-1145
Cow position:
Alignm length: 567
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 295

Conread position: 717-1149
Cow position:
Alignm length: 444
Alignm identity: 285
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 36, 96

Conread position: 721-1146
Cow position:
Alignm length: 441
Alignm identity: 288
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 34, 8

Conread position: 902-1140
Cow position:
Alignm length: 247
Alignm identity: 164
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 107, 0

Conread position: 918-1146
Cow position:
Alignm length: 237
Alignm identity: 162
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 91, 49

Conread position: 934-1146
Cow position:
Alignm length: 219
Alignm identity: 167
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 90, 17

Conread position: 936-1134
Cow position:
Alignm length: 207
Alignm identity: 145
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 70, 126

Show alignments to all cow chromosomes.