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Cow genome map

           
Conread name:
           
Ss1.1-Tra1-TCH01E040098.5
        

               
Conread position:
               
1-125
               

               
Cow position:
               
chrX:6275935-6276060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
1-148
               

               
Cow position:
               
chrX:12997903-12998053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
1-191
               

               
Cow position:
               
chrX:7481262-7481073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
63, 143
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chrX:28604143-28604359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
51, 114
               

               
Conread position:
               
1-222
               

               
Cow position:
               
chrX:10531900-10532123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
49, 146
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chrX:6909676-6909911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
64, 144
               

               
Conread position:
               
1-240
               

               
Cow position:
               
chrX:23018988-23018749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
50, 139
               

               
Conread position:
               
1-261
               

               
Cow position:
               
chrX:12478380-12478122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
51, 146
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chrX:5834511-5834770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chrX:23046804-23046537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
49, 146
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chrX:30174004-30174271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
63, 109
               

               
Conread position:
               
1-270
               

               
Cow position:
               
chrX:24275331-24275059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 154
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chrX:8454414-8454138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
51, 146
               

               
Conread position:
               
1-282
               

               
Cow position:
               
chrX:17668628-17668910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
1-287
               

               
Cow position:
               
chrX:7029849-7029560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
52, 87
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chrX:30666280-30666589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 146
               

               
Conread position:
               
1-310
               

               
Cow position:
               
chrX:4795576-4795277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 153
               

               
Conread position:
               
1-329
               

               
Cow position:
               
chrX:12289283-12289604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
49, 153
               

               
Conread position:
               
1-362
               

               
Cow position:
               
chrX:20316397-20316756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 90
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chrX:28634757-28635119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 190
               

               
Conread position:
               
1-370
               

               
Cow position:
               
chrX:5336911-5337292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 146
               

               
Conread position:
               
1-370
               

               
Cow position:
               
chrX:6873411-6873789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 132
               

               
Conread position:
               
1-370
               

               
Cow position:
               
chrX:7751557-7751194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 153
               

               
Conread position:
               
1-370
               

               
Cow position:
               
chrX:11465342-11465710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 127
               

               
Conread position:
               
1-370
               

               
Cow position:
               
chrX:12182858-12182493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
61, 153
               

               
Conread position:
               
1-370
               

               
Cow position:
               
chrX:24380969-24380595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 87
               

               
Conread position:
               
1-433
               

               
Cow position:
               
chrX:22814045-22813628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
297, 51
               

               
Conread position:
               
1-444
               

               
Cow position:
               
chrX:29882583-29883024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
52, 15
               

               
Conread position:
               
1-448
               

               
Cow position:
               
chrX:20698612-20699044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 145
               

               
Conread position:
               
1-504
               

               
Cow position:
               
chrX:16275335-16274823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 146
               

               
Conread position:
               
1-515
               

               
Cow position:
               
chrX:28549546-28549050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 9
               

               
Conread position:
               
1-520
               

               
Cow position:
               
chrX:26628662-26629160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 22
               

               
Conread position:
               
1-525
               

               
Cow position:
               
chrX:8670251-8669701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 171
               

               
Conread position:
               
1-547
               

               
Cow position:
               
chrX:16236971-16236441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 44
               

               
Conread position:
               
1-565
               

               
Cow position:
               
chrX:24122259-24122801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
575
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 153
               

               
Conread position:
               
1-629
               

               
Cow position:
               
chrX:21602546-21601935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
643
               

               
Alignm identity:
               
469
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 22
               

               
Conread position:
               
1-631
               

               
Cow position:
               
chrX:24136736-24137348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
651
               

               
Alignm identity:
               
452
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 145
               

               
Conread position:
               
1-631
               

               
Cow position:
               
chrX:26504849-26504225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
650
               

               
Alignm identity:
               
442
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 94
               

               
Conread position:
               
1-633
               

               
Cow position:
               
chrX:15127583-15128216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
653
               

               
Alignm identity:
               
449
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 154
               

               
Conread position:
               
1-633
               

               
Cow position:
               
chrX:21289833-21290441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
643
               

               
Alignm identity:
               
463
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
465, 109
               

               
Conread position:
               
1-633
               

               
Cow position:
               
chrX:25332747-25332127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
639
               

               
Alignm identity:
               
446
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
237, 79
               

               
Conread position:
               
1-633
               

               
Cow position:
               
chrX:35017472-35016870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
648
               

               
Alignm identity:
               
442
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 22
               

               
Conread position:
               
1-633
               

               
Cow position:
               
chrX:39717455-39716864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
638
               

               
Alignm identity:
               
436
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
455, 210
               

               
Conread position:
               
1-657
               

               
Cow position:
               
chrX:5299546-5300189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
671
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 77
               

               
Conread position:
               
1-672
               

               
Cow position:
               
chrX:39521565-39520859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
711
               

               
Alignm identity:
               
478
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 99
               

               
Conread position:
               
1-702
               

               
Cow position:
               
chrX:5284076-5284803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
737
               

               
Alignm identity:
               
473
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 58
               

               
Conread position:
               
1-713
               

               
Cow position:
               
chrX:24484752-24485497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
750
               

               
Alignm identity:
               
464
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 241
               

               
Conread position:
               
1-717
               

               
Cow position:
               
chrX:26767537-26768258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
734
               

               
Alignm identity:
               
490
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 39
               

               
Conread position:
               
1-749
               

               
Cow position:
               
chrX:12804204-12804975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
784
               

               
Alignm identity:
               
502
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 147
               

               
Conread position:
               
1-751
               

               
Cow position:
               
chrX:14787214-14787978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
775
               

               
Alignm identity:
               
499
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 153
               

               
Conread position:
               
1-752
               

               
Cow position:
               
chrX:37848673-37847895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
789
               

               
Alignm identity:
               
519
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 155
               

               
Conread position:
               
1-884
               

               
Cow position:
               
chrX:8586753-8585837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
924
               

               
Alignm identity:
               
594
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 98
               

               
Conread position:
               
1-884
               

               
Cow position:
               
chrX:9172706-9173615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
919
               

               
Alignm identity:
               
590
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 155
               

               
Conread position:
               
1-887
               

               
Cow position:
               
chrX:1833486-1832613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
901
               

               
Alignm identity:
               
571
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
466, 66
               

               
Conread position:
               
1-889
               

               
Cow position:
               
chrX:3421781-3422704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
928
               

               
Alignm identity:
               
604
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 174
               

               
Conread position:
               
1-889
               

               
Cow position:
               
chrX:5324065-5324961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
918
               

               
Alignm identity:
               
591
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
288, 61
               

               
Conread position:
               
1-889
               

               
Cow position:
               
chrX:5863056-5862134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
927
               

               
Alignm identity:
               
583
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 153
               

               
Conread position:
               
1-889
               

               
Cow position:
               
chrX:7093257-7092349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
926
               

               
Alignm identity:
               
589
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 142
               

               
Conread position:
               
1-889
               

               
Cow position:
               
chrX:9008000-9007082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
927
               

               
Alignm identity:
               
586
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 141
               

               
Conread position:
               
1-889
               

               
Cow position:
               
chrX:18219055-18218142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
932
               

               
Alignm identity:
               
591
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 153
               

               
Conread position:
               
1-889
               

               
Cow position:
               
chrX:21340059-21339139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
930
               

               
Alignm identity:
               
603
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 34
               

               
Conread position:
               
1-889
               

               
Cow position:
               
chrX:21489889-21488960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
937
               

               
Alignm identity:
               
628
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 150
               

               
Conread position:
               
1-889
               

               
Cow position:
               
chrX:22525946-22526867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
928
               

               
Alignm identity:
               
610
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 150
               

               
Conread position:
               
1-889
               

               
Cow position:
               
chrX:26400809-26401730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
930
               

               
Alignm identity:
               
602
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 127
               

               
Conread position:
               
1-889
               

               
Cow position:
               
chrX:27426658-27427582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
929
               

               
Alignm identity:
               
595
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 151
               

               
Conread position:
               
1-889
               

               
Cow position:
               
chrX:28522039-28522947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
915
               

               
Alignm identity:
               
585
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 45
               

               
Conread position:
               
1-911
               

               
Cow position:
               
chrX:2603707-2602765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
948
               

               
Alignm identity:
               
608
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 153
               

               
Conread position:
               
1-911
               

               
Cow position:
               
chrX:2860143-2861081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
943
               

               
Alignm identity:
               
603
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 171
               

               
Conread position:
               
1-911
               

               
Cow position:
               
chrX:12280597-12281539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
949
               

               
Alignm identity:
               
590
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 146
               

               
Conread position:
               
1-911
               

               
Cow position:
               
chrX:12655095-12656034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
954
               

               
Alignm identity:
               
602
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 153
               

               
Conread position:
               
1-911
               

               
Cow position:
               
chrX:13398458-13399399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
952
               

               
Alignm identity:
               
603
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 33
               

               
Conread position:
               
1-911
               

               
Cow position:
               
chrX:24089061-24088107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
960
               

               
Alignm identity:
               
621
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 156
               

               
Conread position:
               
1-911
               

               
Cow position:
               
chrX:24325487-24326431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
950
               

               
Alignm identity:
               
608
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 153
               

               
Conread position:
               
1-911
               

               
Cow position:
               
chrX:28758966-28759909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
954
               

               
Alignm identity:
               
613
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 146
               

               
Conread position:
               
1-911
               

               
Cow position:
               
chrX:29173942-29174883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
949
               

               
Alignm identity:
               
610
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 81
               

               
Conread position:
               
2-180
               

               
Cow position:
               
chrX:320128-319949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
51, 145
               

               
Conread position:
               
2-236
               

               
Cow position:
               
chrX:30184236-30184467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
58, 91
               

               
Conread position:
               
2-258
               

               
Cow position:
               
chrX:29093162-29092903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 145
               

               
Conread position:
               
2-261
               

               
Cow position:
               
chrX:22777969-22777712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
2-269
               

               
Cow position:
               
chrX:30145545-30145820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
51, 142
               

               
Conread position:
               
2-458
               

               
Cow position:
               
chrX:18954857-18955303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 152
               

               
Conread position:
               
2-503
               

               
Cow position:
               
chrX:21222585-21222110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 141
               

               
Conread position:
               
2-503
               

               
Cow position:
               
chrX:23455913-23456405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 153
               

               
Conread position:
               
2-503
               

               
Cow position:
               
chrX:32095305-32095787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 137
               

               
Conread position:
               
2-545
               

               
Cow position:
               
chrX:15598587-15598055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 144
               

               
Conread position:
               
2-557
               

               
Cow position:
               
chrX:25187317-25186766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 152
               

               
Conread position:
               
2-603
               

               
Cow position:
               
chrX:26527633-26527028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
623
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 152
               

               
Conread position:
               
2-614
               

               
Cow position:
               
chrX:970423-969821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
631
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 149
               

               
Conread position:
               
2-634
               

               
Cow position:
               
chrX:1546592-1545953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
656
               

               
Alignm identity:
               
452
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 152
               

               
Conread position:
               
2-634
               

               
Cow position:
               
chrX:13413458-13414095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
648
               

               
Alignm identity:
               
445
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 152
               

               
Conread position:
               
2-634
               

               
Cow position:
               
chrX:22487846-22487221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
649
               

               
Alignm identity:
               
444
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 152
               

               
Conread position:
               
2-634
               

               
Cow position:
               
chrX:23391944-23392573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
649
               

               
Alignm identity:
               
454
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 152
               

               
Conread position:
               
2-634
               

               
Cow position:
               
chrX:29853906-29854541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
652
               

               
Alignm identity:
               
456
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 152
               

               
Conread position:
               
2-634
               

               
Cow position:
               
chrX:30711011-30710387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
645
               

               
Alignm identity:
               
439
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 135
               

               
Conread position:
               
2-634
               

               
Cow position:
               
chrX:32466909-32466271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
653
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 149
               

               
Conread position:
               
2-634
               

               
Cow position:
               
chrX:38145717-38145089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
647
               

               
Alignm identity:
               
446
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 90
               

               
Conread position:
               
2-834
               

               
Cow position:
               
chrX:20360272-20361140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
873
               

               
Alignm identity:
               
562
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 151
               

               
Conread position:
               
2-889
               

               
Cow position:
               
chrX:3085244-3086161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
929
               

               
Alignm identity:
               
593
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 152
               

               
Conread position:
               
2-889
               

               
Cow position:
               
chrX:17478868-17479784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
923
               

               
Alignm identity:
               
590
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 149
               

               
Conread position:
               
3-307
               

               
Cow position:
               
chrX:19190020-19189726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
43, 39
               

               
Conread position:
               
7-286
               

               
Cow position:
               
chrX:27990127-27990405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
33, 78
               

               
Conread position:
               
7-348
               

               
Cow position:
               
chrX:30179340-30179671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
45, 157
               

               
Conread position:
               
7-503
               

               
Cow position:
               
chrX:40057412-40057886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 137
               

               
Conread position:
               
7-513
               

               
Cow position:
               
chrX:2787564-2788061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
50, 36
               

               
Conread position:
               
7-516
               

               
Cow position:
               
chrX:31192120-31192610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
456, 77
               

               
Conread position:
               
7-524
               

               
Cow position:
               
chrX:24139333-24139834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 96
               

               
Conread position:
               
7-527
               

               
Cow position:
               
chrX:21270531-21271027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 132
               

               
Conread position:
               
7-824
               

               
Cow position:
               
chrX:28506286-28507137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
857
               

               
Alignm identity:
               
545
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 147
               

               
Conread position:
               
7-884
               

               
Cow position:
               
chrX:9192991-9193893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
912
               

               
Alignm identity:
               
585
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 148
               

               
Conread position:
               
7-888
               

               
Cow position:
               
chrX:28651476-28652322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
894
               

               
Alignm identity:
               
602
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
459, 46
               

               
Conread position:
               
7-889
               

               
Cow position:
               
chrX:13077042-13077952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
918
               

               
Alignm identity:
               
586
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 144
               

               
Conread position:
               
7-889
               

               
Cow position:
               
chrX:13097616-13098526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
918
               

               
Alignm identity:
               
585
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 144
               

               
Conread position:
               
7-911
               

               
Cow position:
               
chrX:8963406-8964339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
945
               

               
Alignm identity:
               
586
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 137
               

               
Conread position:
               
10-535
               

               
Cow position:
               
chrX:2142944-2142450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 59
               

               
Conread position:
               
10-888
               

               
Cow position:
               
chrX:29794477-29795335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
896
               

               
Alignm identity:
               
636
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
456, 130
               

               
Conread position:
               
11-158
               

               
Cow position:
               
chrX:982315-982164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
11-207
               

               
Cow position:
               
chrX:27494356-27494155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
42, 139
               

               
Conread position:
               
11-291
               

               
Cow position:
               
chrX:20803776-20803506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
11-325
               

               
Cow position:
               
chrX:17632174-17632494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
11-458
               

               
Cow position:
               
chrX:11668793-11669223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
11-466
               

               
Cow position:
               
chrX:19927965-19927517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 65
               

               
Conread position:
               
11-503
               

               
Cow position:
               
chrX:16698950-16698462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 143
               

               
Conread position:
               
11-503
               

               
Cow position:
               
chrX:30232455-30232941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 143
               

               
Conread position:
               
11-523
               

               
Cow position:
               
chrX:26758942-26759445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 142
               

               
Conread position:
               
11-524
               

               
Cow position:
               
chrX:20796254-20795742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
22, 54
               

               
Conread position:
               
11-527
               

               
Cow position:
               
chrX:19185306-19185799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
278, 55
               

               
Conread position:
               
11-533
               

               
Cow position:
               
chrX:11535132-11534625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 140
               

               
Conread position:
               
11-535
               

               
Cow position:
               
chrX:31080183-31079673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 134
               

               
Conread position:
               
11-538
               

               
Cow position:
               
chrX:18532648-18532110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
350, 30
               

               
Conread position:
               
11-539
               

               
Cow position:
               
chrX:22131048-22131572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 35
               

               
Conread position:
               
11-614
               

               
Cow position:
               
chrX:21829172-21828578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
621
               

               
Alignm identity:
               
433
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 140
               

               
Conread position:
               
11-631
               

               
Cow position:
               
chrX:13006985-13007577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
632
               

               
Alignm identity:
               
449
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 143
               

               
Conread position:
               
11-631
               

               
Cow position:
               
chrX:30046469-30047071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
630
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 140
               

               
Conread position:
               
11-633
               

               
Cow position:
               
chrX:21632935-21633525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
637
               

               
Alignm identity:
               
433
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 94
               

               
Conread position:
               
11-634
               

               
Cow position:
               
chrX:41151875-41151252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
641
               

               
Alignm identity:
               
444
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 142
               

               
Conread position:
               
11-720
               

               
Cow position:
               
chrX:12341846-12341101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
748
               

               
Alignm identity:
               
486
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 165
               

               
Conread position:
               
11-826
               

               
Cow position:
               
chrX:2101507-2100665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
852
               

               
Alignm identity:
               
530
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 140
               

               
Conread position:
               
11-888
               

               
Cow position:
               
chrX:15179781-15180696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
918
               

               
Alignm identity:
               
587
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 45
               

               
Conread position:
               
11-889
               

               
Cow position:
               
chrX:16363474-16364388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
919
               

               
Alignm identity:
               
589
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 143
               

               
Conread position:
               
11-889
               

               
Cow position:
               
chrX:22610957-22610050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
916
               

               
Alignm identity:
               
574
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 76
               

               
Conread position:
               
11-911
               

               
Cow position:
               
chrX:3376575-3377502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
940
               

               
Alignm identity:
               
596
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 123
               

               
Conread position:
               
11-911
               

               
Cow position:
               
chrX:22619666-22620590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
935
               

               
Alignm identity:
               
610
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 143
               

               
Conread position:
               
11-911
               

               
Cow position:
               
chrX:31187585-31188514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
941
               

               
Alignm identity:
               
590
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 164
               

               
Conread position:
               
11-1146
               

               
Cow position:
               
chrX:21586684-21585534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
1168
               

               
Alignm identity:
               
841
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 129
               

               
Conread position:
               
12-282
               

               
Cow position:
               
chrX:29950926-29951189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 41
               

               
Conread position:
               
12-474
               

               
Cow position:
               
chrX:30056319-30055854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 122
               

               
Conread position:
               
12-825
               

               
Cow position:
               
chrX:5395315-5396163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
852
               

               
Alignm identity:
               
552
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 142
               

               
Conread position:
               
13-124
               

               
Cow position:
               
chrX:21794745-21794631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
13-308
               

               
Cow position:
               
chrX:30142742-30143034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 129
               

               
Conread position:
               
13-592
               

               
Cow position:
               
chrX:2482992-2483566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 142
               

               
Conread position:
               
13-707
               

               
Cow position:
               
chrX:8479351-8478634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
729
               

               
Alignm identity:
               
495
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 87
               

               
Conread position:
               
23-349
               

               
Cow position:
               
chrX:23882357-23882668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
19, 107
               

               
Conread position:
               
23-552
               

               
Cow position:
               
chrX:12671908-12672458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 120
               

               
Conread position:
               
27-164
               

               
Cow position:
               
chrX:24275873-24276012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
19, 121
               

               
Conread position:
               
29-634
               

               
Cow position:
               
chrX:23276748-23276147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
620
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 56
               

               
Conread position:
               
34-745
               

               
Cow position:
               
chrX:16017500-16018209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
732
               

               
Alignm identity:
               
542
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 118
               

               
Conread position:
               
55-911
               

               
Cow position:
               
chrX:16565477-16564588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
898
               

               
Alignm identity:
               
557
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 96
               

               
Conread position:
               
56-326
               

               
Cow position:
               
chrX:32467771-32467513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
59-603
               

               
Cow position:
               
chrX:29284333-29283787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 92
               

               
Conread position:
               
62-323
               

               
Cow position:
               
chrX:34988245-34987982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
61, 134
               

               
Conread position:
               
68-889
               

               
Cow position:
               
chrX:12704324-12705171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
857
               

               
Alignm identity:
               
542
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
212, 109
               

               
Conread position:
               
72-314
               

               
Cow position:
               
chrX:23041729-23041969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
70, 107
               

               
Conread position:
               
73-682
               

               
Cow position:
               
chrX:9901013-9901642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
637
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 78
               

               
Conread position:
               
79-491
               

               
Cow position:
               
chrX:30369402-30369801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
256, 71
               

               
Conread position:
               
79-911
               

               
Cow position:
               
chrX:6577272-6576411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
872
               

               
Alignm identity:
               
560
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
212, 51
               

               
Conread position:
               
87-911
               

               
Cow position:
               
chrX:21304946-21305796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
856
               

               
Alignm identity:
               
531
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
281, 63
               

               
Conread position:
               
88-370
               

               
Cow position:
               
chrX:15980916-15981196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
90-370
               

               
Cow position:
               
chrX:28562686-28562966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
61, 25
               

               
Conread position:
               
104-911
               

               
Cow position:
               
chrX:14051631-14050794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
844
               

               
Alignm identity:
               
525
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 46
               

               
Conread position:
               
109-834
               

               
Cow position:
               
chrX:30010501-30009747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
762
               

               
Alignm identity:
               
476
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 11
               

               
Conread position:
               
114-465
               

               
Cow position:
               
chrX:35020191-35019862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 28
               

               
Conread position:
               
130-911
               

               
Cow position:
               
chrX:979147-978331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
822
               

               
Alignm identity:
               
516
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 20
               

               
Conread position:
               
142-1146
               

               
Cow position:
               
chrX:28553539-28552534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
1022
               

               
Alignm identity:
               
737
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
323, 123
               

               
Conread position:
               
151-326
               

               
Cow position:
               
chrX:31035356-31035182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
74, 12
               

               
Conread position:
               
151-911
               

               
Cow position:
               
chrX:13031922-13032711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
794
               

               
Alignm identity:
               
504
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 86
               

               
Conread position:
               
156-890
               

               
Cow position:
               
chrX:22583418-22584186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
772
               

               
Alignm identity:
               
510
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 219
               

               
Conread position:
               
187-566
               

               
Cow position:
               
chrX:318558-318185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
261, 144
               

               
Conread position:
               
193-763
               

               
Cow position:
               
chrX:5337140-5337718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
587
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
265, 15
               

               
Conread position:
               
206-435
               

               
Cow position:
               
chrX:5834689-5834916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
34, 12
               

               
Conread position:
               
206-633
               

               
Cow position:
               
chrX:30990482-30990898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
261, 12
               

               
Conread position:
               
249-542
               

               
Cow position:
               
chrX:17668995-17669277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
207, 67
               

               
Conread position:
               
253-634
               

               
Cow position:
               
chrX:29092635-29092263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
195, 33
               

               
Conread position:
               
260-634
               

               
Cow position:
               
chrX:31198032-31197657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
8, 72
               

               
Conread position:
               
263-631
               

               
Cow position:
               
chrX:27984900-27985266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
203, 29
               

               
Conread position:
               
272-748
               

               
Cow position:
               
chrX:27990622-27991109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
45, 414
               

               
Conread position:
               
274-1137
               

               
Cow position:
               
chrX:6283832-6284674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
878
               

               
Alignm identity:
               
609
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 23
               

               
Conread position:
               
293-656
               

               
Cow position:
               
chrX:30144123-30144492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
173, 12
               

               
Conread position:
               
300-633
               

               
Cow position:
               
chrX:28604710-28605034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
163, 45
               

               
Conread position:
               
306-889
               

               
Cow position:
               
chrX:9124716-9124123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
11, 47
               

               
Conread position:
               
306-911
               

               
Cow position:
               
chrX:29934766-29934147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
623
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
11, 37
               

               
Conread position:
               
317-808
               

               
Cow position:
               
chrX:31035047-31034551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 48
               

               
Conread position:
               
338-887
               

               
Cow position:
               
chrX:30174543-30175102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
62, 326
               

               
Conread position:
               
345-891
               

               
Cow position:
               
chrX:30190088-30190640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 152
               

               
Conread position:
               
347-736
               

               
Cow position:
               
chrX:28635259-28635647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
220, 90
               

               
Conread position:
               
351-680
               

               
Cow position:
               
chrX:8453755-8453414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
107, 86
               

               
Conread position:
               
351-749
               

               
Cow position:
               
chrX:30668183-30668593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
351-889
               

               
Cow position:
               
chrX:27972923-27973472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
555
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
10, 23
               

               
Conread position:
               
351-911
               

               
Cow position:
               
chrX:37811683-37811111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
107, 25
               

               
Conread position:
               
351-966
               

               
Cow position:
               
chrX:31372274-31371659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
628
               

               
Alignm identity:
               
457
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 167
               

               
Conread position:
               
358-631
               

               
Cow position:
               
chrX:6910420-6910701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
112, 96
               

               
Conread position:
               
364-887
               

               
Cow position:
               
chrX:20316811-20317339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
103, 9
               

               
Conread position:
               
367-918
               

               
Cow position:
               
chrX:25041134-25041679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 36
               

               
Conread position:
               
430-1137
               

               
Cow position:
               
chrX:2537177-2537891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
728
               

               
Alignm identity:
               
524
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 193
               

               
Conread position:
               
463-1150
               

               
Cow position:
               
chrX:21791912-21791206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
712
               

               
Alignm identity:
               
507
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 241
               

               
Conread position:
               
465-633
               

               
Cow position:
               
chrX:35955443-35955610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
99, 35
               

               
Conread position:
               
465-695
               

               
Cow position:
               
chrX:11669255-11669478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
99, 168
               

               
Conread position:
               
465-1094
               

               
Cow position:
               
chrX:35016075-35015451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
649
               

               
Alignm identity:
               
458
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 267
               

               
Conread position:
               
466-889
               

               
Cow position:
               
chrX:30819823-30820254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
82, 134
               

               
Conread position:
               
511-889
               

               
Cow position:
               
chrX:15601777-15602145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
53, 220
               

               
Conread position:
               
535-889
               

               
Cow position:
               
chrX:14593916-14593555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
33, 165
               

               
Conread position:
               
540-745
               

               
Cow position:
               
chrX:17669834-17670042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
21, 14
               

               
Conread position:
               
542-1075
               

               
Cow position:
               
chrX:6361644-6362182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 113
               

               
Conread position:
               
599-845
               

               
Cow position:
               
chrX:28548393-28548146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
155, 29
               

               
Conread position:
               
623-1139
               

               
Cow position:
               
chrX:30144404-30144925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 42
               

               
Conread position:
               
655-1146
               

               
Cow position:
               
chrX:42450445-42450939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 130
               

               
Conread position:
               
693-1133
               

               
Cow position:
               
chrX:35955623-35956072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
60, 22
               

               
Conread position:
               
797-1139
               

               
Cow position:
               
chrX:31034335-31033991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
211, 105
               

               
Conread position:
               
846-1149
               

               
Cow position:
               
chrX:26504092-26503782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
158, 58
               

               
Conread position:
               
902-1141
               

               
Cow position:
               
chrX:25331915-25331670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
104, 161
               

               
Conread position:
               
902-1149
               

               
Cow position:
               
chrX:5835833-5836088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
903-1150
               

               
Cow position:
               
chrX:26745502-26745254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
103, 17
               

               
Conread position:
               
922-1111
               

               
Cow position:
               
chrX:22776848-22776654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
84, 47
               

               
Conread position:
               
927-1141
               

               
Cow position:
               
chrX:21290652-21290872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
82, 59
               

               
Conread position:
               
927-1141
               

               
Cow position:
               
chrX:35016624-35016402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
927-1150
               

               
Cow position:
               
chrX:6276558-6276781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
102, 82
               
Show alignments to all cow chromosomes.