Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01F020058.5 |
| Conread position: | 1-176 |
| Cow position: | chr12:16821841-16822026 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 82, 72 |
| Conread position: | 1-185 |
| Cow position: | chr12:21427059-21427252 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 92, 28 |
| Conread position: | 1-244 |
| Cow position: | chr12:36427605-36427860 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 196 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 90, 110 |
| Conread position: | 1-269 |
| Cow position: | chr12:21198330-21198608 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 202 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 90, 255 |
| Conread position: | 1-271 |
| Cow position: | chr12:1402863-1403142 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 210 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 74, 110 |
| Conread position: | 1-271 |
| Cow position: | chr12:3631495-3631215 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 107, 177 |
| Conread position: | 1-271 |
| Cow position: | chr12:4157743-4158025 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 110 |
| Conread position: | 1-271 |
| Cow position: | chr12:6406278-6405996 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 110 |
| Conread position: | 1-271 |
| Cow position: | chr12:8197582-8197864 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 208 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 90, 110 |
| Conread position: | 1-271 |
| Cow position: | chr12:8677716-8677452 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 127, 74 |
| Conread position: | 1-271 |
| Cow position: | chr12:11098613-11098885 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 209 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 74, 177 |
| Conread position: | 1-271 |
| Cow position: | chr12:14662260-14661982 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 51, 188 |
| Conread position: | 1-271 |
| Cow position: | chr12:22205375-22205093 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 110 |
| Conread position: | 1-271 |
| Cow position: | chr12:25100689-25100408 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 211 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 75, 110 |
| Conread position: | 1-271 |
| Cow position: | chr12:27855588-27855315 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 96, 47 |
| Conread position: | 1-271 |
| Cow position: | chr12:28765650-28765370 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 212 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 74, 110 |
| Conread position: | 1-271 |
| Cow position: | chr12:32653910-32654191 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 92, 28 |
| Conread position: | 1-271 |
| Cow position: | chr12:36367202-36367484 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 206 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-271 |
| Cow position: | chr12:36448947-36449227 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 212 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 90, 110 |
| Conread position: | 1-271 |
| Cow position: | chr12:37558919-37559198 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 92, 28 |
| Conread position: | 1-271 |
| Cow position: | chr12:42859456-42859173 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 25, 159 |
| Conread position: | 1-271 |
| Cow position: | chr12:43031020-43030739 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 92, 22 |
| Conread position: | 1-272 |
| Cow position: | chr12:36479543-36479826 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 110 |
| Conread position: | 7-270 |
| Cow position: | chr12:2282935-2283211 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 84, 244 |
| Conread position: | 10-271 |
| Cow position: | chr12:600978-600708 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 65, 101 |
| Conread position: | 33-271 |
| Cow position: | chr12:3361312-3361574 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 60, 174 |
| Conread position: | 41-271 |
| Cow position: | chr12:27932525-27932279 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 34, 29 |
| Conread position: | 100-269 |
| Cow position: | chr12:25262997-25262821 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 129-271 |
| Cow position: | chr12:1889007-1888863 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 529-958 |
| Cow position: | chr12:35314021-35313609 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 90 |
| Conread position: | 529-1068 |
| Cow position: | chr12:25262834-25262282 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 531-785 |
| Cow position: | chr12:8197853-8198111 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 185 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 531-831 |
| Cow position: | chr12:28765381-28765077 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 531-838 |
| Cow position: | chr12:24557457-24557160 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 220 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 30, 86 |
| Conread position: | 531-891 |
| Cow position: | chr12:36479814-36480156 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 242 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 142, 35 |
| Conread position: | 531-914 |
| Cow position: | chr12:1888874-1888489 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 250 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 531-1001 |
| Cow position: | chr12:21198599-21199073 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 129 |
| Conread position: | 531-1019 |
| Cow position: | chr12:22205104-22204613 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 56 |
| Conread position: | 531-1057 |
| Cow position: | chr12:17979373-17979900 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 108 |
| Conread position: | 531-1059 |
| Cow position: | chr12:600719-600190 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 237 |
| Conread position: | 531-1060 |
| Cow position: | chr12:1403131-1403667 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 124 |
| Conread position: | 531-1060 |
| Cow position: | chr12:3361563-3362114 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 531-1060 |
| Cow position: | chr12:6406007-6405467 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 531-1060 |
| Cow position: | chr12:8677463-8676924 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 226 |
| Conread position: | 531-1060 |
| Cow position: | chr12:20997459-20996907 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 531-1060 |
| Cow position: | chr12:21428496-21429040 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 228 |
| Conread position: | 531-1060 |
| Cow position: | chr12:25100419-25099898 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 276 |
| Conread position: | 531-1060 |
| Cow position: | chr12:27855326-27854789 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 56 |
| Conread position: | 531-1060 |
| Cow position: | chr12:43030750-43030207 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 531-1067 |
| Cow position: | chr12:11098874-11099406 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 163 |
| Conread position: | 532-1021 |
| Cow position: | chr12:21209291-21209778 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 291 |
| Conread position: | 532-1060 |
| Cow position: | chr12:36449219-36449739 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 88 |
| Conread position: | 534-891 |
| Cow position: | chr12:36427873-36428221 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 249 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 23, 89 |
| Conread position: | 534-1043 |
| Cow position: | chr12:14661990-14661469 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 360 |
| Conread position: | 534-1065 |
| Cow position: | chr12:32063760-32064271 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 57 |
| Conread position: | 535-1060 |
| Cow position: | chr12:32654184-32654722 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 117 |
| Conread position: | 535-1060 |
| Cow position: | chr12:36367477-36368004 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 88 |
| Conread position: | 539-1057 |
| Cow position: | chr12:37559636-37560180 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 215 |
| Conread position: | 542-1021 |
| Cow position: | chr12:5369464-5369941 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 302 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 129, 165 |
| Conread position: | 543-1037 |
| Cow position: | chr12:25554722-25554216 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 99 |
| Conread position: | 548-868 |
| Cow position: | chr12:21254056-21253734 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 218 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 127, 263 |
| Conread position: | 548-1000 |
| Cow position: | chr12:41380337-41380791 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 562-1057 |
| Cow position: | chr12:21942410-21942911 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 29 |
| Conread position: | 563-1060 |
| Cow position: | chr12:42858864-42858362 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 367 |
| Conread position: | 570-900 |
| Cow position: | chr12:1869966-1870276 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 101, 29 |
| Conread position: | 574-1060 |
| Cow position: | chr12:27932222-27931729 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 130 |
| Conread position: | 586-1060 |
| Cow position: | chr12:11870970-11871445 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 306 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 5, 35 |
| Conread position: | 591-1060 |
| Cow position: | chr12:32678247-32677773 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 329 |
| Conread position: | 634-932 |
| Cow position: | chr12:11580493-11580783 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 20 |
| Conread position: | 651-1060 |
| Cow position: | chr12:21387483-21387068 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 379 |
| Conread position: | 670-1060 |
| Cow position: | chr12:12292750-12293132 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 261 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 69, 139 |
| Conread position: | 717-923 |
| Cow position: | chr12:1777475-1777265 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 131, 18 |
| Conread position: | 728-1021 |
| Cow position: | chr12:349199-349492 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 211 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 11, 17 |
| Conread position: | 734-1060 |
| Cow position: | chr12:35345406-35345724 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 19 |
| Conread position: | 740-1018 |
| Cow position: | chr12:28004786-28005049 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 62 |
| Conread position: | 777-979 |
| Cow position: | chr12:48211633-48211434 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 127, 134 |
| Conread position: | 788-1060 |
| Cow position: | chr12:23141298-23141018 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 191 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 797-1031 |
| Cow position: | chr12:18464875-18465105 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 154, 55 |
| Conread position: | 807-1060 |
| Cow position: | chr12:14694931-14695190 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 19, 103 |
| Conread position: | 816-1057 |
| Cow position: | chr12:485806-486047 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 96, 84 |
| Conread position: | 895-1060 |
| Cow position: | chr12:1870307-1870481 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 29, 70 |
| Conread position: | 895-1063 |
| Cow position: | chr12:48471872-48471700 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 56, 14 |
| Conread position: | 944-1058 |
| Cow position: | chr12:35313339-35313225 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 91 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 7, 80 |
Show alignments to all cow chromosomes.