Cow genome map

Conread name: Ss1.1-Tra1-TCH01F020058.5

Conread position: 1-126
Cow position:
Alignm length: 131
Alignm identity: 108
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 73, 110

Conread position: 1-207
Cow position:
Alignm length: 218
Alignm identity: 151
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 43, 28

Conread position: 1-261
Cow position:
Alignm length: 274
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 117

Conread position: 1-263
Cow position:
Alignm length: 276
Alignm identity: 202
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 90, 110

Conread position: 1-264
Cow position:
Alignm length: 277
Alignm identity: 195
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 90, 0

Conread position: 1-265
Cow position:
Alignm length: 276
Alignm identity: 191
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 92, 253

Conread position: 1-269
Cow position:
Alignm length: 284
Alignm identity: 205
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 90, 7

Conread position: 1-270
Cow position:
Alignm length: 287
Alignm identity: 211
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 74, 114

Conread position: 1-271
Cow position:
Alignm length: 285
Alignm identity: 204
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 90, 124

Conread position: 1-271
Cow position:
Alignm length: 284
Alignm identity: 199
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 93, 124

Conread position: 1-271
Cow position:
Alignm length: 279
Alignm identity: 199
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 90, 110

Conread position: 1-271
Cow position:
Alignm length: 295
Alignm identity: 210
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 103, 42

Conread position: 1-271
Cow position:
Alignm length: 285
Alignm identity: 209
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 17, 125

Conread position: 1-271
Cow position:
Alignm length: 285
Alignm identity: 204
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 74, 110

Conread position: 1-271
Cow position:
Alignm length: 282
Alignm identity: 201
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 90, 0

Conread position: 1-271
Cow position:
Alignm length: 284
Alignm identity: 206
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 74, 16

Conread position: 1-271
Cow position:
Alignm length: 284
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 117

Conread position: 1-271
Cow position:
Alignm length: 282
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 209

Conread position: 1-271
Cow position:
Alignm length: 282
Alignm identity: 200
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 74, 204

Conread position: 1-271
Cow position:
Alignm length: 279
Alignm identity: 204
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 127, 90

Conread position: 1-271
Cow position:
Alignm length: 283
Alignm identity: 203
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 73, 0

Conread position: 1-271
Cow position:
Alignm length: 283
Alignm identity: 202
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 90, 124

Conread position: 1-271
Cow position:
Alignm length: 284
Alignm identity: 208
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 75, 110

Conread position: 1-271
Cow position:
Alignm length: 284
Alignm identity: 209
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 90, 124

Conread position: 1-271
Cow position:
Alignm length: 284
Alignm identity: 205
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 74, 13

Conread position: 1-271
Cow position:
Alignm length: 284
Alignm identity: 203
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 82, 0

Conread position: 1-271
Cow position:
Alignm length: 278
Alignm identity: 203
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 109, 83

Conread position: 1-271
Cow position:
Alignm length: 281
Alignm identity: 196
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 90, 63

Conread position: 1-271
Cow position:
Alignm length: 284
Alignm identity: 209
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 90, 110

Conread position: 1-271
Cow position:
Alignm length: 282
Alignm identity: 205
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 90, 124

Conread position: 1-271
Cow position:
Alignm length: 278
Alignm identity: 200
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 74, 191

Conread position: 1-272
Cow position:
Alignm length: 282
Alignm identity: 192
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 81, 234

Conread position: 2-271
Cow position:
Alignm length: 282
Alignm identity: 197
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 73, 195

Conread position: 3-209
Cow position:
Alignm length: 212
Alignm identity: 148
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 124, 37

Conread position: 3-271
Cow position:
Alignm length: 281
Alignm identity: 202
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 90, 249

Conread position: 3-271
Cow position:
Alignm length: 282
Alignm identity: 206
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 46, 0

Conread position: 3-271
Cow position:
Alignm length: 281
Alignm identity: 199
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 88, 0

Conread position: 8-267
Cow position:
Alignm length: 273
Alignm identity: 196
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 83, 103

Conread position: 8-268
Cow position:
Alignm length: 274
Alignm identity: 199
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 67, 28

Conread position: 14-270
Cow position:
Alignm length: 273
Alignm identity: 188
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 77, 13

Conread position: 23-271
Cow position:
Alignm length: 261
Alignm identity: 179
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 53, 30

Conread position: 42-271
Cow position:
Alignm length: 243
Alignm identity: 176
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 64, 153

Conread position: 129-271
Cow position:
Alignm length: 145
Alignm identity: 111
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 95, 127

Conread position: 129-271
Cow position:
Alignm length: 145
Alignm identity: 107
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 95, 0

Conread position: 529-932
Cow position:
Alignm length: 409
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 306

Conread position: 529-1058
Cow position:
Alignm length: 547
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 224

Conread position: 531-663
Cow position:
Alignm length: 136
Alignm identity: 102
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 531-682
Cow position:
Alignm length: 156
Alignm identity: 115
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 28, 0

Conread position: 531-740
Cow position:
Alignm length: 220
Alignm identity: 158
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 26, 57

Conread position: 531-773
Cow position:
Alignm length: 248
Alignm identity: 180
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 26, 106

Conread position: 531-782
Cow position:
Alignm length: 256
Alignm identity: 191
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 26, 99

Conread position: 531-851
Cow position:
Alignm length: 325
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 226

Conread position: 531-908
Cow position:
Alignm length: 384
Alignm identity: 258
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 26, 69

Conread position: 531-914
Cow position:
Alignm length: 389
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 74

Conread position: 531-948
Cow position:
Alignm length: 426
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 531-958
Cow position:
Alignm length: 441
Alignm identity: 291
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 26, 346

Conread position: 531-972
Cow position:
Alignm length: 450
Alignm identity: 291
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 25, 57

Conread position: 531-987
Cow position:
Alignm length: 463
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 226

Conread position: 531-999
Cow position:
Alignm length: 474
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 138

Conread position: 531-1004
Cow position:
Alignm length: 484
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 72

Conread position: 531-1021
Cow position:
Alignm length: 499
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 169

Conread position: 531-1052
Cow position:
Alignm length: 527
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 313

Conread position: 531-1055
Cow position:
Alignm length: 541
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 171

Conread position: 531-1056
Cow position:
Alignm length: 536
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 47

Conread position: 531-1058
Cow position:
Alignm length: 544
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 86

Conread position: 531-1058
Cow position:
Alignm length: 547
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 106

Conread position: 531-1058
Cow position:
Alignm length: 541
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 136

Conread position: 531-1060
Cow position:
Alignm length: 540
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 25

Conread position: 531-1060
Cow position:
Alignm length: 545
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 428

Conread position: 531-1060
Cow position:
Alignm length: 541
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 261

Conread position: 531-1060
Cow position:
Alignm length: 541
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 83

Conread position: 531-1060
Cow position:
Alignm length: 556
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 57

Conread position: 531-1060
Cow position:
Alignm length: 537
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 89

Conread position: 531-1060
Cow position:
Alignm length: 542
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 531-1060
Cow position:
Alignm length: 537
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 499

Conread position: 531-1060
Cow position:
Alignm length: 541
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 152

Conread position: 531-1060
Cow position:
Alignm length: 556
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 234

Conread position: 531-1060
Cow position:
Alignm length: 542
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 400

Conread position: 531-1060
Cow position:
Alignm length: 536
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 228

Conread position: 531-1060
Cow position:
Alignm length: 541
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 339

Conread position: 531-1060
Cow position:
Alignm length: 538
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 89

Conread position: 531-1060
Cow position:
Alignm length: 542
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 531-1060
Cow position:
Alignm length: 550
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 133

Conread position: 531-1060
Cow position:
Alignm length: 554
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 196

Conread position: 531-1060
Cow position:
Alignm length: 541
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 353

Conread position: 531-1060
Cow position:
Alignm length: 540
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 531-1060
Cow position:
Alignm length: 540
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 531-1060
Cow position:
Alignm length: 541
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 380

Conread position: 531-1064
Cow position:
Alignm length: 556
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 91

Conread position: 531-1064
Cow position:
Alignm length: 545
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 82

Conread position: 531-1064
Cow position:
Alignm length: 538
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 30

Conread position: 532-1056
Cow position:
Alignm length: 536
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 193

Conread position: 532-1060
Cow position:
Alignm length: 543
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 115

Conread position: 533-1068
Cow position:
Alignm length: 547
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 53

Conread position: 534-1060
Cow position:
Alignm length: 546
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 0

Conread position: 534-1062
Cow position:
Alignm length: 557
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 97

Conread position: 535-1057
Cow position:
Alignm length: 533
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 238

Conread position: 542-1060
Cow position:
Alignm length: 537
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 71

Conread position: 547-893
Cow position:
Alignm length: 348
Alignm identity: 227
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 125, 11

Conread position: 558-1039
Cow position:
Alignm length: 486
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 54

Conread position: 558-1058
Cow position:
Alignm length: 506
Alignm identity: 316
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 113, 137

Conread position: 568-955
Cow position:
Alignm length: 399
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 56

Conread position: 568-1068
Cow position:
Alignm length: 515
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 359

Conread position: 598-1060
Cow position:
Alignm length: 474
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 12

Conread position: 599-774
Cow position:
Alignm length: 177
Alignm identity: 124
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 72, 0

Conread position: 624-922
Cow position:
Alignm length: 300
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 241, 43

Conread position: 630-860
Cow position:
Alignm length: 232
Alignm identity: 168
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 37, 5

Conread position: 635-1028
Cow position:
Alignm length: 400
Alignm identity: 273
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 36, 18

Conread position: 644-1065
Cow position:
Alignm length: 428
Alignm identity: 284
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 31, 23

Conread position: 650-1060
Cow position:
Alignm length: 431
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 10

Conread position: 653-1058
Cow position:
Alignm length: 414
Alignm identity: 275
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 18, 61

Conread position: 654-1055
Cow position:
Alignm length: 411
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 259

Conread position: 666-1066
Cow position:
Alignm length: 408
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 285, 0

Conread position: 679-1060
Cow position:
Alignm length: 404
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 134

Conread position: 679-1060
Cow position:
Alignm length: 388
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 272, 88

Conread position: 694-1060
Cow position:
Alignm length: 369
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 25

Conread position: 704-1060
Cow position:
Alignm length: 360
Alignm identity: 232
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 25, 57

Conread position: 729-1064
Cow position:
Alignm length: 342
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 0

Conread position: 735-1064
Cow position:
Alignm length: 337
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 230

Conread position: 739-1057
Cow position:
Alignm length: 328
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 198

Conread position: 750-1060
Cow position:
Alignm length: 314
Alignm identity: 199
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 67, 59

Conread position: 812-1060
Cow position:
Alignm length: 257
Alignm identity: 195
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 11, 63

Conread position: 836-1056
Cow position:
Alignm length: 222
Alignm identity: 151
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 114, 83

Conread position: 842-1060
Cow position:
Alignm length: 230
Alignm identity: 159
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 74, 192

Conread position: 863-1060
Cow position:
Alignm length: 209
Alignm identity: 153
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 47, 56

Conread position: 864-1064
Cow position:
Alignm length: 208
Alignm identity: 148
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 8, 16

Show alignments to all cow chromosomes.