Cow genome map

Conread name: Ss1.1-Tra1-TCH01F020058.5

Conread position: 1-126
Cow position:
Alignm length: 129
Alignm identity: 99
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 34, 0

Conread position: 1-240
Cow position:
Alignm length: 249
Alignm identity: 184
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 41, 184

Conread position: 1-241
Cow position:
Alignm length: 258
Alignm identity: 178
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 83, 0

Conread position: 1-243
Cow position:
Alignm length: 257
Alignm identity: 181
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 90, 174

Conread position: 1-244
Cow position:
Alignm length: 251
Alignm identity: 181
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 121, 11

Conread position: 1-246
Cow position:
Alignm length: 259
Alignm identity: 181
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 78, 183

Conread position: 1-267
Cow position:
Alignm length: 282
Alignm identity: 198
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 92, 61

Conread position: 1-267
Cow position:
Alignm length: 280
Alignm identity: 202
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 101, 201

Conread position: 1-269
Cow position:
Alignm length: 282
Alignm identity: 212
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 74, 110

Conread position: 1-269
Cow position:
Alignm length: 282
Alignm identity: 187
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 105, 60

Conread position: 1-270
Cow position:
Alignm length: 278
Alignm identity: 201
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 30, 123

Conread position: 1-270
Cow position:
Alignm length: 283
Alignm identity: 203
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 90, 124

Conread position: 1-270
Cow position:
Alignm length: 283
Alignm identity: 208
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 74, 110

Conread position: 1-270
Cow position:
Alignm length: 283
Alignm identity: 193
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 74, 124

Conread position: 1-271
Cow position:
Alignm length: 283
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 0

Conread position: 1-271
Cow position:
Alignm length: 284
Alignm identity: 208
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 90, 110

Conread position: 1-271
Cow position:
Alignm length: 278
Alignm identity: 194
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 118, 95

Conread position: 1-271
Cow position:
Alignm length: 277
Alignm identity: 194
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 107, 180

Conread position: 1-271
Cow position:
Alignm length: 285
Alignm identity: 212
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 57, 125

Conread position: 1-271
Cow position:
Alignm length: 281
Alignm identity: 201
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 74, 217

Conread position: 1-271
Cow position:
Alignm length: 284
Alignm identity: 194
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 78, 37

Conread position: 1-271
Cow position:
Alignm length: 283
Alignm identity: 202
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 94, 0

Conread position: 1-271
Cow position:
Alignm length: 282
Alignm identity: 208
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 74, 110

Conread position: 1-271
Cow position:
Alignm length: 284
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 124

Conread position: 1-271
Cow position:
Alignm length: 282
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 115

Conread position: 1-271
Cow position:
Alignm length: 284
Alignm identity: 207
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 90, 125

Conread position: 1-271
Cow position:
Alignm length: 282
Alignm identity: 201
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 92, 110

Conread position: 1-271
Cow position:
Alignm length: 284
Alignm identity: 206
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 87, 110

Conread position: 1-271
Cow position:
Alignm length: 283
Alignm identity: 193
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 75, 180

Conread position: 1-271
Cow position:
Alignm length: 278
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 0

Conread position: 1-271
Cow position:
Alignm length: 284
Alignm identity: 212
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 74, 110

Conread position: 1-271
Cow position:
Alignm length: 284
Alignm identity: 209
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 74, 110

Conread position: 1-271
Cow position:
Alignm length: 283
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 196

Conread position: 1-271
Cow position:
Alignm length: 284
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 110

Conread position: 1-271
Cow position:
Alignm length: 283
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 0

Conread position: 1-271
Cow position:
Alignm length: 284
Alignm identity: 198
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 92, 47

Conread position: 1-271
Cow position:
Alignm length: 281
Alignm identity: 196
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 33, 55

Conread position: 1-273
Cow position:
Alignm length: 281
Alignm identity: 194
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 90, 191

Conread position: 1-275
Cow position:
Alignm length: 288
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 124

Conread position: 2-271
Cow position:
Alignm length: 283
Alignm identity: 202
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 91, 23

Conread position: 3-271
Cow position:
Alignm length: 282
Alignm identity: 204
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 82, 26

Conread position: 3-271
Cow position:
Alignm length: 282
Alignm identity: 208
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 72, 108

Conread position: 4-271
Cow position:
Alignm length: 275
Alignm identity: 207
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 84, 116

Conread position: 4-271
Cow position:
Alignm length: 281
Alignm identity: 189
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 87, 116

Conread position: 8-270
Cow position:
Alignm length: 276
Alignm identity: 207
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 67, 72

Conread position: 20-271
Cow position:
Alignm length: 264
Alignm identity: 187
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 73, 13

Conread position: 33-248
Cow position:
Alignm length: 227
Alignm identity: 159
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 62, 0

Conread position: 43-268
Cow position:
Alignm length: 239
Alignm identity: 163
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 37, 75

Conread position: 129-271
Cow position:
Alignm length: 145
Alignm identity: 107
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 100, 0

Conread position: 129-271
Cow position:
Alignm length: 145
Alignm identity: 108
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 95, 37

Conread position: 132-271
Cow position:
Alignm length: 142
Alignm identity: 108
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 92, 114

Conread position: 150-1042
Cow position:
Alignm length: 900
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 759, 515

Conread position: 517-1024
Cow position:
Alignm length: 517
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 44

Conread position: 527-985
Cow position:
Alignm length: 465
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 45

Conread position: 528-886
Cow position:
Alignm length: 365
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 112

Conread position: 528-1060
Cow position:
Alignm length: 543
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 384

Conread position: 529-930
Cow position:
Alignm length: 407
Alignm identity: 262
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 12, 31

Conread position: 529-1060
Cow position:
Alignm length: 555
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 518

Conread position: 530-702
Cow position:
Alignm length: 178
Alignm identity: 131
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 27, 54

Conread position: 530-1062
Cow position:
Alignm length: 545
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 51

Conread position: 531-712
Cow position:
Alignm length: 183
Alignm identity: 136
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 141, 27

Conread position: 531-732
Cow position:
Alignm length: 206
Alignm identity: 155
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 26, 187

Conread position: 531-771
Cow position:
Alignm length: 243
Alignm identity: 171
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 140, 30

Conread position: 531-793
Cow position:
Alignm length: 267
Alignm identity: 192
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 26, 0

Conread position: 531-802
Cow position:
Alignm length: 277
Alignm identity: 183
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 25, 73

Conread position: 531-805
Cow position:
Alignm length: 278
Alignm identity: 201
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 26, 139

Conread position: 531-827
Cow position:
Alignm length: 301
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 531-848
Cow position:
Alignm length: 318
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 0

Conread position: 531-894
Cow position:
Alignm length: 369
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 54

Conread position: 531-904
Cow position:
Alignm length: 381
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 168

Conread position: 531-906
Cow position:
Alignm length: 385
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 50

Conread position: 531-911
Cow position:
Alignm length: 385
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 27

Conread position: 531-948
Cow position:
Alignm length: 422
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 0

Conread position: 531-1021
Cow position:
Alignm length: 497
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 284

Conread position: 531-1026
Cow position:
Alignm length: 505
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 113

Conread position: 531-1031
Cow position:
Alignm length: 506
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 73

Conread position: 531-1055
Cow position:
Alignm length: 542
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 531-1058
Cow position:
Alignm length: 537
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 473

Conread position: 531-1060
Cow position:
Alignm length: 539
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 242

Conread position: 531-1060
Cow position:
Alignm length: 546
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 15

Conread position: 531-1060
Cow position:
Alignm length: 542
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 208

Conread position: 531-1060
Cow position:
Alignm length: 548
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 229

Conread position: 531-1060
Cow position:
Alignm length: 554
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 223

Conread position: 531-1060
Cow position:
Alignm length: 540
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 77

Conread position: 531-1060
Cow position:
Alignm length: 549
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 59

Conread position: 531-1060
Cow position:
Alignm length: 547
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 57

Conread position: 531-1060
Cow position:
Alignm length: 543
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 54

Conread position: 531-1060
Cow position:
Alignm length: 543
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 331

Conread position: 531-1060
Cow position:
Alignm length: 540
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 139

Conread position: 531-1060
Cow position:
Alignm length: 542
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 192

Conread position: 531-1060
Cow position:
Alignm length: 541
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 242

Conread position: 531-1064
Cow position:
Alignm length: 542
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 531-1065
Cow position:
Alignm length: 566
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 174

Conread position: 533-830
Cow position:
Alignm length: 305
Alignm identity: 202
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 24, 218

Conread position: 533-1057
Cow position:
Alignm length: 530
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 157

Conread position: 533-1060
Cow position:
Alignm length: 537
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 118

Conread position: 534-986
Cow position:
Alignm length: 460
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 46

Conread position: 534-1021
Cow position:
Alignm length: 497
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 161

Conread position: 534-1068
Cow position:
Alignm length: 542
Alignm identity: 327
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 23, 89

Conread position: 535-1060
Cow position:
Alignm length: 535
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 167

Conread position: 535-1060
Cow position:
Alignm length: 537
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 409

Conread position: 535-1060
Cow position:
Alignm length: 538
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 204

Conread position: 535-1060
Cow position:
Alignm length: 542
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 148

Conread position: 535-1062
Cow position:
Alignm length: 538
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 188

Conread position: 538-883
Cow position:
Alignm length: 349
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 146

Conread position: 539-1044
Cow position:
Alignm length: 532
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 0

Conread position: 542-1004
Cow position:
Alignm length: 468
Alignm identity: 280
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 105, 271

Conread position: 544-842
Cow position:
Alignm length: 299
Alignm identity: 190
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 15, 0

Conread position: 548-722
Cow position:
Alignm length: 176
Alignm identity: 126
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 124, 99

Conread position: 555-1059
Cow position:
Alignm length: 512
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 44

Conread position: 558-946
Cow position:
Alignm length: 389
Alignm identity: 243
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 76, 0

Conread position: 563-1060
Cow position:
Alignm length: 515
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 57

Conread position: 612-1063
Cow position:
Alignm length: 468
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 139

Conread position: 646-1060
Cow position:
Alignm length: 428
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 9

Conread position: 650-1000
Cow position:
Alignm length: 355
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 70

Conread position: 653-1060
Cow position:
Alignm length: 419
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 42

Conread position: 662-1047
Cow position:
Alignm length: 393
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 691-948
Cow position:
Alignm length: 260
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 119

Conread position: 699-1064
Cow position:
Alignm length: 372
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 251, 42

Conread position: 701-1060
Cow position:
Alignm length: 364
Alignm identity: 253
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 322, 18

Conread position: 702-913
Cow position:
Alignm length: 215
Alignm identity: 149
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 186, 117

Conread position: 714-1057
Cow position:
Alignm length: 348
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 313

Conread position: 730-1011
Cow position:
Alignm length: 288
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 115

Conread position: 740-1052
Cow position:
Alignm length: 320
Alignm identity: 217
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 176, 0

Conread position: 740-1063
Cow position:
Alignm length: 338
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 155

Conread position: 741-1066
Cow position:
Alignm length: 335
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 167

Conread position: 757-1060
Cow position:
Alignm length: 311
Alignm identity: 198
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 201, 137

Conread position: 760-1060
Cow position:
Alignm length: 310
Alignm identity: 200
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 29, 16

Conread position: 764-1059
Cow position:
Alignm length: 302
Alignm identity: 216
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 186, 105

Conread position: 764-1060
Cow position:
Alignm length: 317
Alignm identity: 222
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 132, 0

Conread position: 767-1064
Cow position:
Alignm length: 299
Alignm identity: 204
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 238, 183

Conread position: 776-1021
Cow position:
Alignm length: 247
Alignm identity: 169
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 174, 0

Conread position: 777-1064
Cow position:
Alignm length: 294
Alignm identity: 202
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 173, 0

Conread position: 812-1060
Cow position:
Alignm length: 254
Alignm identity: 188
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 139, 216

Conread position: 824-1060
Cow position:
Alignm length: 247
Alignm identity: 175
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 50, 82

Conread position: 824-1064
Cow position:
Alignm length: 247
Alignm identity: 171
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 126, 0

Conread position: 842-1060
Cow position:
Alignm length: 220
Alignm identity: 151
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 108, 150

Conread position: 842-1067
Cow position:
Alignm length: 234
Alignm identity: 167
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 90, 7

Conread position: 858-1064
Cow position:
Alignm length: 208
Alignm identity: 144
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 92, 140

Conread position: 873-1063
Cow position:
Alignm length: 193
Alignm identity: 144
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 77, 151

Conread position: 882-1060
Cow position:
Alignm length: 182
Alignm identity: 133
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 69, 0

Conread position: 886-1068
Cow position:
Alignm length: 198
Alignm identity: 146
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 65, 30

Show alignments to all cow chromosomes.