Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01F020058.5 |
| Conread position: | 1-126 |
| Cow position: | chr21:20743964-20743836 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 1-240 |
| Cow position: | chr21:4589445-4589198 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 41, 184 |
| Conread position: | 1-241 |
| Cow position: | chr21:18819622-18819365 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 1-243 |
| Cow position: | chr21:13313313-13313563 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 90, 174 |
| Conread position: | 1-244 |
| Cow position: | chr21:33252054-33252302 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 121, 11 |
| Conread position: | 1-246 |
| Cow position: | chr21:7266984-7266732 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 181 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 78, 183 |
| Conread position: | 1-267 |
| Cow position: | chr21:6622131-6622409 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 198 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 92, 61 |
| Conread position: | 1-267 |
| Cow position: | chr21:28735777-28736055 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 101, 201 |
| Conread position: | 1-269 |
| Cow position: | chr21:10850624-10850899 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 212 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 74, 110 |
| Conread position: | 1-269 |
| Cow position: | chr21:21915234-21915510 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 105, 60 |
| Conread position: | 1-270 |
| Cow position: | chr21:29625-29896 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 30, 123 |
| Conread position: | 1-270 |
| Cow position: | chr21:2511436-2511717 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 90, 124 |
| Conread position: | 1-270 |
| Cow position: | chr21:27282934-27283214 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 208 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 74, 110 |
| Conread position: | 1-270 |
| Cow position: | chr21:48116648-48116926 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 193 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 74, 124 |
| Conread position: | 1-271 |
| Cow position: | chr21:1192299-1192581 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 1-271 |
| Cow position: | chr21:2476000-2475718 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 208 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 90, 110 |
| Conread position: | 1-271 |
| Cow position: | chr21:2540540-2540268 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 118, 95 |
| Conread position: | 1-271 |
| Cow position: | chr21:2711045-2711313 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 107, 180 |
| Conread position: | 1-271 |
| Cow position: | chr21:2883200-2882917 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 212 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 57, 125 |
| Conread position: | 1-271 |
| Cow position: | chr21:3779316-3779589 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 201 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 74, 217 |
| Conread position: | 1-271 |
| Cow position: | chr21:4077378-4077657 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 78, 37 |
| Conread position: | 1-271 |
| Cow position: | chr21:4091189-4091471 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-271 |
| Cow position: | chr21:10567216-10567496 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 208 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 74, 110 |
| Conread position: | 1-271 |
| Cow position: | chr21:11406455-11406173 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 124 |
| Conread position: | 1-271 |
| Cow position: | chr21:11453115-11452835 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 115 |
| Conread position: | 1-271 |
| Cow position: | chr21:11506137-11506418 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 207 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 90, 125 |
| Conread position: | 1-271 |
| Cow position: | chr21:12055460-12055181 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 92, 110 |
| Conread position: | 1-271 |
| Cow position: | chr21:23812719-23813000 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 206 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 87, 110 |
| Conread position: | 1-271 |
| Cow position: | chr21:23861867-23862148 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 75, 180 |
| Conread position: | 1-271 |
| Cow position: | chr21:30562350-30562627 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 1-271 |
| Cow position: | chr21:30599380-30599101 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 212 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 74, 110 |
| Conread position: | 1-271 |
| Cow position: | chr21:31559112-31558835 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 209 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 74, 110 |
| Conread position: | 1-271 |
| Cow position: | chr21:35144304-35144583 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 196 |
| Conread position: | 1-271 |
| Cow position: | chr21:37046161-37046443 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 110 |
| Conread position: | 1-271 |
| Cow position: | chr21:40271133-40270851 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 1-271 |
| Cow position: | chr21:47941400-47941679 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 198 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 92, 47 |
| Conread position: | 1-271 |
| Cow position: | chr21:47949607-47949882 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 33, 55 |
| Conread position: | 1-273 |
| Cow position: | chr21:359909-360179 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 90, 191 |
| Conread position: | 1-275 |
| Cow position: | chr21:37371786-37372070 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 124 |
| Conread position: | 2-271 |
| Cow position: | chr21:39425605-39425884 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 91, 23 |
| Conread position: | 3-271 |
| Cow position: | chr21:1287675-1287397 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 82, 26 |
| Conread position: | 3-271 |
| Cow position: | chr21:27070718-27070438 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 208 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 72, 108 |
| Conread position: | 4-271 |
| Cow position: | chr21:467436-467699 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 207 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 84, 116 |
| Conread position: | 4-271 |
| Cow position: | chr21:39087550-39087828 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 189 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 87, 116 |
| Conread position: | 8-270 |
| Cow position: | chr21:146477-146748 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 207 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 67, 72 |
| Conread position: | 20-271 |
| Cow position: | chr21:2416775-2417037 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 73, 13 |
| Conread position: | 33-248 |
| Cow position: | chr21:26637624-26637398 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 43-268 |
| Cow position: | chr21:2502453-2502689 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 37, 75 |
| Conread position: | 129-271 |
| Cow position: | chr21:5840587-5840443 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 129-271 |
| Cow position: | chr21:46916354-46916496 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 95, 37 |
| Conread position: | 132-271 |
| Cow position: | chr21:27149594-27149732 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 92, 114 |
| Conread position: | 150-1042 |
| Cow position: | chr21:5017547-5018442 (view UCSC Genome Browser custom track) |
| Alignm length: | 900 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 759, 515 |
| Conread position: | 517-1024 |
| Cow position: | chr21:1689362-1688848 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 44 |
| Conread position: | 527-985 |
| Cow position: | chr21:13313568-13314024 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 45 |
| Conread position: | 528-886 |
| Cow position: | chr21:49295414-49295777 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 112 |
| Conread position: | 528-1060 |
| Cow position: | chr21:5840457-5839916 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 384 |
| Conread position: | 529-930 |
| Cow position: | chr21:33954189-33954578 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 262 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 12, 31 |
| Conread position: | 529-1060 |
| Cow position: | chr21:1287412-1286859 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 518 |
| Conread position: | 530-702 |
| Cow position: | chr21:2711301-2711475 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 27, 54 |
| Conread position: | 530-1062 |
| Cow position: | chr21:37148844-37149385 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 51 |
| Conread position: | 531-712 |
| Cow position: | chr21:23862137-23862316 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 141, 27 |
| Conread position: | 531-732 |
| Cow position: | chr21:4094315-4094519 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 26, 187 |
| Conread position: | 531-771 |
| Cow position: | chr21:26743371-26743133 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 140, 30 |
| Conread position: | 531-793 |
| Cow position: | chr21:27149721-27149987 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 192 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 531-802 |
| Cow position: | chr21:34173117-34172850 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 25, 73 |
| Conread position: | 531-805 |
| Cow position: | chr21:5015495-5015221 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 201 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 26, 139 |
| Conread position: | 531-827 |
| Cow position: | chr21:47941668-47941968 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 531-848 |
| Cow position: | chr21:48116916-48117229 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 531-894 |
| Cow position: | chr21:11452846-11452479 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 54 |
| Conread position: | 531-904 |
| Cow position: | chr21:4077646-4078022 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 168 |
| Conread position: | 531-906 |
| Cow position: | chr21:26637392-26637010 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 50 |
| Conread position: | 531-911 |
| Cow position: | chr21:20743766-20743387 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 27 |
| Conread position: | 531-948 |
| Cow position: | chr21:46916485-46916906 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 531-1021 |
| Cow position: | chr21:37046432-37046925 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 284 |
| Conread position: | 531-1026 |
| Cow position: | chr21:4184714-4185213 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 113 |
| Conread position: | 531-1031 |
| Cow position: | chr21:39087817-39088310 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 73 |
| Conread position: | 531-1055 |
| Cow position: | chr21:18817745-18817204 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 531-1058 |
| Cow position: | chr21:146738-147271 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 473 |
| Conread position: | 531-1060 |
| Cow position: | chr21:1192570-1193102 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 242 |
| Conread position: | 531-1060 |
| Cow position: | chr21:2417026-2417564 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 15 |
| Conread position: | 531-1060 |
| Cow position: | chr21:3779578-3780117 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 208 |
| Conread position: | 531-1060 |
| Cow position: | chr21:10850890-10851433 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 229 |
| Conread position: | 531-1060 |
| Cow position: | chr21:11506407-11506958 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 223 |
| Conread position: | 531-1060 |
| Cow position: | chr21:21519450-21519947 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 77 |
| Conread position: | 531-1060 |
| Cow position: | chr21:21915501-21916035 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 59 |
| Conread position: | 531-1060 |
| Cow position: | chr21:21943952-21943417 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 57 |
| Conread position: | 531-1060 |
| Cow position: | chr21:25782453-25782985 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 54 |
| Conread position: | 531-1060 |
| Cow position: | chr21:28256240-28256772 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 331 |
| Conread position: | 531-1060 |
| Cow position: | chr21:35144572-35145106 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 139 |
| Conread position: | 531-1060 |
| Cow position: | chr21:39425873-39426408 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 192 |
| Conread position: | 531-1060 |
| Cow position: | chr21:40270862-40270325 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 242 |
| Conread position: | 531-1064 |
| Cow position: | chr21:2882928-2882387 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 531-1065 |
| Cow position: | chr21:4589185-4588625 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 174 |
| Conread position: | 533-830 |
| Cow position: | chr21:23603352-23603655 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 24, 218 |
| Conread position: | 533-1057 |
| Cow position: | chr21:12055190-12054674 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 157 |
| Conread position: | 533-1060 |
| Cow position: | chr21:37372053-37372585 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 118 |
| Conread position: | 534-986 |
| Cow position: | chr21:37719205-37718756 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 46 |
| Conread position: | 534-1021 |
| Cow position: | chr21:10567488-10567972 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 161 |
| Conread position: | 534-1068 |
| Cow position: | chr21:16693053-16693575 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 327 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 23, 89 |
| Conread position: | 535-1060 |
| Cow position: | chr21:217868-218374 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 167 |
| Conread position: | 535-1060 |
| Cow position: | chr21:26402674-26402141 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 409 |
| Conread position: | 535-1060 |
| Cow position: | chr21:27070153-27069617 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 204 |
| Conread position: | 535-1060 |
| Cow position: | chr21:33252991-33253529 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 148 |
| Conread position: | 535-1062 |
| Cow position: | chr21:467692-468205 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 188 |
| Conread position: | 538-883 |
| Cow position: | chr21:27566464-27566804 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 146 |
| Conread position: | 539-1044 |
| Cow position: | chr21:360461-360992 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 542-1004 |
| Cow position: | chr21:45301654-45301190 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 280 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 105, 271 |
| Conread position: | 544-842 |
| Cow position: | chr21:18049595-18049303 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 548-722 |
| Cow position: | chr21:7591124-7591298 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 124, 99 |
| Conread position: | 555-1059 |
| Cow position: | chr21:29919-30419 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 44 |
| Conread position: | 558-946 |
| Cow position: | chr21:49325310-49325688 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 243 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 563-1060 |
| Cow position: | chr21:31515480-31514969 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 57 |
| Conread position: | 612-1063 |
| Cow position: | chr21:34001780-34001321 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 139 |
| Conread position: | 646-1060 |
| Cow position: | chr21:9892820-9893240 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 9 |
| Conread position: | 650-1000 |
| Cow position: | chr21:2540141-2539797 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 70 |
| Conread position: | 653-1060 |
| Cow position: | chr21:2511777-2512194 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 42 |
| Conread position: | 662-1047 |
| Cow position: | chr21:37935768-37936160 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 691-948 |
| Cow position: | chr21:6624746-6625003 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 119 |
| Conread position: | 699-1064 |
| Cow position: | chr21:34823231-34822861 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 251, 42 |
| Conread position: | 701-1060 |
| Cow position: | chr21:2711950-2712283 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 253 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 322, 18 |
| Conread position: | 702-913 |
| Cow position: | chr21:21222983-21222770 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 186, 117 |
| Conread position: | 714-1057 |
| Cow position: | chr21:42914362-42914708 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 313 |
| Conread position: | 730-1011 |
| Cow position: | chr21:48292462-48292747 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 115 |
| Conread position: | 740-1052 |
| Cow position: | chr21:2673984-2673665 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 217 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 176, 0 |
| Conread position: | 740-1063 |
| Cow position: | chr21:26835913-26836248 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 155 |
| Conread position: | 741-1066 |
| Cow position: | chr21:45782505-45782837 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 167 |
| Conread position: | 757-1060 |
| Cow position: | chr21:36979873-36979569 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 201, 137 |
| Conread position: | 760-1060 |
| Cow position: | chr21:45786390-45786084 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 29, 16 |
| Conread position: | 764-1059 |
| Cow position: | chr21:30598428-30598134 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 216 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 186, 105 |
| Conread position: | 764-1060 |
| Cow position: | chr21:27284499-27284815 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 222 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 767-1064 |
| Cow position: | chr21:3169446-3169742 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 204 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 238, 183 |
| Conread position: | 776-1021 |
| Cow position: | chr21:29625685-29625439 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 174, 0 |
| Conread position: | 777-1064 |
| Cow position: | chr21:27036341-27036048 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 173, 0 |
| Conread position: | 812-1060 |
| Cow position: | chr21:47942042-47942294 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 188 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 139, 216 |
| Conread position: | 824-1060 |
| Cow position: | chr21:28736280-28736522 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 50, 82 |
| Conread position: | 824-1064 |
| Cow position: | chr21:40683339-40683093 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 842-1060 |
| Cow position: | chr21:11452421-11452205 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 108, 150 |
| Conread position: | 842-1067 |
| Cow position: | chr21:26849895-26849664 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 90, 7 |
| Conread position: | 858-1064 |
| Cow position: | chr21:7063653-7063853 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 92, 140 |
| Conread position: | 873-1063 |
| Cow position: | chr21:30562639-30562829 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 77, 151 |
| Conread position: | 882-1060 |
| Cow position: | chr21:47646495-47646676 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 886-1068 |
| Cow position: | chr21:27566914-27567109 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 65, 30 |
Show alignments to all cow chromosomes.