Cow genome map

Conread name: Ss1.1-Tra1-TCH01F020058.5

Conread position: 1-211
Cow position:
Alignm length: 221
Alignm identity: 156
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 87, 184

Conread position: 1-223
Cow position:
Alignm length: 234
Alignm identity: 173
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 74, 110

Conread position: 1-223
Cow position:
Alignm length: 234
Alignm identity: 173
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 92, 124

Conread position: 1-260
Cow position:
Alignm length: 273
Alignm identity: 200
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 74, 110

Conread position: 1-264
Cow position:
Alignm length: 272
Alignm identity: 182
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 102, 28

Conread position: 1-269
Cow position:
Alignm length: 281
Alignm identity: 206
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 74, 196

Conread position: 1-269
Cow position:
Alignm length: 275
Alignm identity: 190
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 40, 28

Conread position: 1-270
Cow position:
Alignm length: 291
Alignm identity: 207
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 88, 132

Conread position: 1-270
Cow position:
Alignm length: 282
Alignm identity: 194
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 75, 0

Conread position: 1-270
Cow position:
Alignm length: 283
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 117

Conread position: 1-271
Cow position:
Alignm length: 283
Alignm identity: 196
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 93, 35

Conread position: 1-271
Cow position:
Alignm length: 285
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 111

Conread position: 1-271
Cow position:
Alignm length: 282
Alignm identity: 204
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 84, 266

Conread position: 1-271
Cow position:
Alignm length: 284
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 110

Conread position: 1-271
Cow position:
Alignm length: 291
Alignm identity: 211
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 90, 74

Conread position: 1-271
Cow position:
Alignm length: 277
Alignm identity: 196
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 74, 109

Conread position: 1-271
Cow position:
Alignm length: 282
Alignm identity: 189
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 82, 123

Conread position: 1-271
Cow position:
Alignm length: 283
Alignm identity: 209
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 74, 196

Conread position: 1-271
Cow position:
Alignm length: 280
Alignm identity: 188
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 86, 22

Conread position: 1-271
Cow position:
Alignm length: 283
Alignm identity: 197
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 107, 194

Conread position: 1-271
Cow position:
Alignm length: 283
Alignm identity: 204
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 74, 187

Conread position: 1-271
Cow position:
Alignm length: 284
Alignm identity: 208
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 90, 110

Conread position: 1-271
Cow position:
Alignm length: 284
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 110

Conread position: 1-271
Cow position:
Alignm length: 278
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 124

Conread position: 1-271
Cow position:
Alignm length: 284
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 117

Conread position: 1-271
Cow position:
Alignm length: 281
Alignm identity: 203
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 86, 108

Conread position: 1-271
Cow position:
Alignm length: 277
Alignm identity: 200
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 90, 211

Conread position: 1-271
Cow position:
Alignm length: 284
Alignm identity: 204
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 90, 124

Conread position: 1-271
Cow position:
Alignm length: 281
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 92

Conread position: 1-271
Cow position:
Alignm length: 284
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 124

Conread position: 1-271
Cow position:
Alignm length: 284
Alignm identity: 208
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 74, 110

Conread position: 1-272
Cow position:
Alignm length: 285
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 110

Conread position: 2-126
Cow position:
Alignm length: 131
Alignm identity: 103
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 24, 0

Conread position: 3-227
Cow position:
Alignm length: 237
Alignm identity: 165
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 85, 0

Conread position: 3-260
Cow position:
Alignm length: 268
Alignm identity: 203
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 88, 114

Conread position: 4-207
Cow position:
Alignm length: 213
Alignm identity: 152
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 87, 23

Conread position: 4-271
Cow position:
Alignm length: 276
Alignm identity: 193
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 71, 107

Conread position: 5-271
Cow position:
Alignm length: 279
Alignm identity: 202
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 70, 0

Conread position: 5-271
Cow position:
Alignm length: 280
Alignm identity: 206
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 86, 106

Conread position: 6-271
Cow position:
Alignm length: 279
Alignm identity: 206
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 85, 105

Conread position: 8-271
Cow position:
Alignm length: 277
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 103

Conread position: 14-253
Cow position:
Alignm length: 248
Alignm identity: 182
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 114, 13

Conread position: 14-271
Cow position:
Alignm length: 271
Alignm identity: 195
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 77, 97

Conread position: 120-270
Cow position:
Alignm length: 152
Alignm identity: 113
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 106, 0

Conread position: 120-271
Cow position:
Alignm length: 154
Alignm identity: 119
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 109, 0

Conread position: 124-271
Cow position:
Alignm length: 150
Alignm identity: 111
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 105, 0

Conread position: 529-1043
Cow position:
Alignm length: 527
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 171

Conread position: 529-1060
Cow position:
Alignm length: 544
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 93

Conread position: 529-1060
Cow position:
Alignm length: 547
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 93

Conread position: 529-1060
Cow position:
Alignm length: 544
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 160

Conread position: 530-1056
Cow position:
Alignm length: 536
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 117

Conread position: 531-680
Cow position:
Alignm length: 154
Alignm identity: 116
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 26, 0

Conread position: 531-680
Cow position:
Alignm length: 154
Alignm identity: 116
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 26, 0

Conread position: 531-758
Cow position:
Alignm length: 232
Alignm identity: 168
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 26, 0

Conread position: 531-793
Cow position:
Alignm length: 270
Alignm identity: 187
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 26, 75

Conread position: 531-864
Cow position:
Alignm length: 337
Alignm identity: 222
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 26, 54

Conread position: 531-873
Cow position:
Alignm length: 348
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 224

Conread position: 531-878
Cow position:
Alignm length: 352
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 106

Conread position: 531-1002
Cow position:
Alignm length: 482
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 57

Conread position: 531-1003
Cow position:
Alignm length: 489
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 12

Conread position: 531-1003
Cow position:
Alignm length: 480
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 531-1019
Cow position:
Alignm length: 494
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 166

Conread position: 531-1043
Cow position:
Alignm length: 522
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 12

Conread position: 531-1043
Cow position:
Alignm length: 525
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 225

Conread position: 531-1057
Cow position:
Alignm length: 535
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 234

Conread position: 531-1060
Cow position:
Alignm length: 537
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 224

Conread position: 531-1060
Cow position:
Alignm length: 548
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 105

Conread position: 531-1060
Cow position:
Alignm length: 540
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 92

Conread position: 531-1060
Cow position:
Alignm length: 543
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 92

Conread position: 531-1060
Cow position:
Alignm length: 548
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 54

Conread position: 531-1060
Cow position:
Alignm length: 541
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 158

Conread position: 531-1064
Cow position:
Alignm length: 550
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 57

Conread position: 531-1065
Cow position:
Alignm length: 558
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 531-1067
Cow position:
Alignm length: 551
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 78

Conread position: 531-1067
Cow position:
Alignm length: 547
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 423

Conread position: 533-746
Cow position:
Alignm length: 218
Alignm identity: 160
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 24, 129

Conread position: 533-911
Cow position:
Alignm length: 384
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 205

Conread position: 533-1042
Cow position:
Alignm length: 520
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 533-1042
Cow position:
Alignm length: 523
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 200

Conread position: 533-1058
Cow position:
Alignm length: 535
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 289

Conread position: 534-1057
Cow position:
Alignm length: 536
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 102

Conread position: 534-1060
Cow position:
Alignm length: 537
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 222

Conread position: 535-690
Cow position:
Alignm length: 161
Alignm identity: 119
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 21, 0

Conread position: 541-892
Cow position:
Alignm length: 362
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 82

Conread position: 541-907
Cow position:
Alignm length: 371
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 57

Conread position: 543-1058
Cow position:
Alignm length: 521
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 174

Conread position: 548-889
Cow position:
Alignm length: 347
Alignm identity: 234
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 196, 118

Conread position: 555-1060
Cow position:
Alignm length: 513
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 36

Conread position: 558-1060
Cow position:
Alignm length: 521
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 275

Conread position: 560-982
Cow position:
Alignm length: 428
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 75

Conread position: 561-860
Cow position:
Alignm length: 302
Alignm identity: 210
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 109, 156

Conread position: 563-1060
Cow position:
Alignm length: 507
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 64

Conread position: 573-1060
Cow position:
Alignm length: 491
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 78

Conread position: 574-1060
Cow position:
Alignm length: 499
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 461

Conread position: 584-1060
Cow position:
Alignm length: 484
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 74

Conread position: 600-1043
Cow position:
Alignm length: 454
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 0

Conread position: 603-1060
Cow position:
Alignm length: 464
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 347, 63

Conread position: 606-1060
Cow position:
Alignm length: 474
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 114

Conread position: 614-1067
Cow position:
Alignm length: 465
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 287

Conread position: 621-912
Cow position:
Alignm length: 294
Alignm identity: 197
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 50, 93

Conread position: 621-1058
Cow position:
Alignm length: 441
Alignm identity: 269
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 50, 76

Conread position: 634-1057
Cow position:
Alignm length: 425
Alignm identity: 284
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 38, 83

Conread position: 637-1015
Cow position:
Alignm length: 383
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 132

Conread position: 664-1060
Cow position:
Alignm length: 402
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 47

Conread position: 675-1059
Cow position:
Alignm length: 388
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 78

Conread position: 684-1057
Cow position:
Alignm length: 382
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 225, 162

Conread position: 694-1021
Cow position:
Alignm length: 331
Alignm identity: 235
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 158, 77

Conread position: 698-1021
Cow position:
Alignm length: 326
Alignm identity: 214
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 209, 24

Conread position: 701-1057
Cow position:
Alignm length: 366
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 129

Conread position: 702-1060
Cow position:
Alignm length: 360
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 248, 144

Conread position: 735-1064
Cow position:
Alignm length: 336
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 110

Conread position: 737-1060
Cow position:
Alignm length: 332
Alignm identity: 210
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 213, 169

Conread position: 738-1023
Cow position:
Alignm length: 300
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 11

Conread position: 740-1060
Cow position:
Alignm length: 325
Alignm identity: 204
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 21, 147

Conread position: 746-938
Cow position:
Alignm length: 194
Alignm identity: 136
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 177, 137

Conread position: 746-1060
Cow position:
Alignm length: 322
Alignm identity: 226
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 15, 161

Conread position: 759-960
Cow position:
Alignm length: 204
Alignm identity: 148
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 14, 65

Conread position: 778-1060
Cow position:
Alignm length: 286
Alignm identity: 198
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 173, 0

Conread position: 813-987
Cow position:
Alignm length: 177
Alignm identity: 136
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 102, 21

Conread position: 854-1058
Cow position:
Alignm length: 216
Alignm identity: 171
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 62, 0

Conread position: 865-1063
Cow position:
Alignm length: 205
Alignm identity: 142
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 85, 0

Conread position: 880-1060
Cow position:
Alignm length: 187
Alignm identity: 129
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 71, 0

Conread position: 882-1060
Cow position:
Alignm length: 187
Alignm identity: 137
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 28, 62

Conread position: 884-1064
Cow position:
Alignm length: 187
Alignm identity: 133
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 66, 0

Show alignments to all cow chromosomes.