Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01F020058.5 |
| Conread position: | 1-179 |
| Cow position: | chr25:17560220-17560033 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 1-240 |
| Cow position: | chr25:18303818-18304067 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 33, 184 |
| Conread position: | 1-241 |
| Cow position: | chr25:20775510-20775263 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 90, 186 |
| Conread position: | 1-242 |
| Cow position: | chr25:27022153-27021906 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 186 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 5, 78 |
| Conread position: | 1-254 |
| Cow position: | chr25:8675332-8675597 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 201 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 74, 110 |
| Conread position: | 1-260 |
| Cow position: | chr25:18889598-18889330 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 110 |
| Conread position: | 1-260 |
| Cow position: | chr25:32580374-32580645 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 90, 110 |
| Conread position: | 1-261 |
| Cow position: | chr25:12942283-12942011 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 203 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 1-265 |
| Cow position: | chr25:11932685-11932415 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 86, 142 |
| Conread position: | 1-265 |
| Cow position: | chr25:19917494-19917770 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 90, 124 |
| Conread position: | 1-271 |
| Cow position: | chr25:6172313-6172595 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 207 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 90, 110 |
| Conread position: | 1-271 |
| Cow position: | chr25:13550620-13550338 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 205 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 90, 110 |
| Conread position: | 1-271 |
| Cow position: | chr25:13781447-13781729 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 205 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 1-271 |
| Cow position: | chr25:17589144-17588861 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 40, 125 |
| Conread position: | 1-271 |
| Cow position: | chr25:18175694-18175969 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 79, 28 |
| Conread position: | 1-271 |
| Cow position: | chr25:18194688-18194408 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 198 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 1-271 |
| Cow position: | chr25:20630047-20630325 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 213 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 74, 110 |
| Conread position: | 1-271 |
| Cow position: | chr25:22147955-22148235 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 43 |
| Conread position: | 1-271 |
| Cow position: | chr25:24659670-24659941 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 75, 28 |
| Conread position: | 1-271 |
| Cow position: | chr25:26279663-26279939 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 212 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 74, 110 |
| Conread position: | 1-271 |
| Cow position: | chr25:26879607-26879887 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 1-271 |
| Cow position: | chr25:34014070-34013784 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 213 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 8-271 |
| Cow position: | chr25:34346593-34346319 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 204 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 67, 13 |
| Conread position: | 77-271 |
| Cow position: | chr25:25507195-25507399 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 14, 39 |
| Conread position: | 120-271 |
| Cow position: | chr25:33664678-33664525 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 24, 43 |
| Conread position: | 529-1060 |
| Cow position: | chr25:18182418-18182941 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 339 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 28, 110 |
| Conread position: | 531-669 |
| Cow position: | chr25:6172584-6172725 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 531-680 |
| Cow position: | chr25:13550349-13550196 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 531-704 |
| Cow position: | chr25:18304078-18304256 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 531-709 |
| Cow position: | chr25:19917797-19917979 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 531-780 |
| Cow position: | chr25:32580639-32580893 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 187 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 531-794 |
| Cow position: | chr25:26279928-26280195 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 531-948 |
| Cow position: | chr25:26879876-26880287 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 84 |
| Conread position: | 531-1060 |
| Cow position: | chr25:13781718-13782256 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 381 |
| Conread position: | 531-1060 |
| Cow position: | chr25:17588872-17588334 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 382 |
| Conread position: | 531-1060 |
| Cow position: | chr25:18274084-18273547 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 90 |
| Conread position: | 531-1060 |
| Cow position: | chr25:20630314-20630851 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 433 |
| Conread position: | 531-1060 |
| Cow position: | chr25:22148224-22148759 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 291 |
| Conread position: | 531-1060 |
| Cow position: | chr25:25507388-25507925 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 242 |
| Conread position: | 531-1060 |
| Cow position: | chr25:27021897-27021363 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 388 |
| Conread position: | 531-1060 |
| Cow position: | chr25:34346330-34345781 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 82 |
| Conread position: | 531-1064 |
| Cow position: | chr25:17559866-17559334 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 479 |
| Conread position: | 533-1060 |
| Cow position: | chr25:12942000-12941449 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 105 |
| Conread position: | 535-1064 |
| Cow position: | chr25:18889055-18888515 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 567-1068 |
| Cow position: | chr25:3377504-3377004 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 323 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 104, 281 |
| Conread position: | 569-1049 |
| Cow position: | chr25:12758363-12757873 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 324 |
| Conread position: | 575-1060 |
| Cow position: | chr25:18193031-18192539 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 71 |
| Conread position: | 590-1058 |
| Cow position: | chr25:18450066-18450540 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 166 |
| Conread position: | 595-1062 |
| Cow position: | chr25:24659447-24658988 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 17 |
| Conread position: | 634-1060 |
| Cow position: | chr25:20774584-20774148 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 285 |
| Conread position: | 640-964 |
| Cow position: | chr25:37466044-37466360 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 31, 81 |
| Conread position: | 640-1060 |
| Cow position: | chr25:26928111-26928523 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 289 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 31, 112 |
| Conread position: | 655-1067 |
| Cow position: | chr25:36636874-36636450 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 389 |
| Conread position: | 670-1021 |
| Cow position: | chr25:24216633-24216282 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 219 |
| Conread position: | 685-1050 |
| Cow position: | chr25:33259268-33259626 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 265, 81 |
| Conread position: | 685-1056 |
| Cow position: | chr25:27525296-27524925 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 144 |
| Conread position: | 688-999 |
| Cow position: | chr25:18252033-18251739 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 263, 31 |
| Conread position: | 703-1056 |
| Cow position: | chr25:18305011-18305368 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 50 |
| Conread position: | 705-1060 |
| Cow position: | chr25:19921414-19921754 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 245, 117 |
| Conread position: | 723-1058 |
| Cow position: | chr25:18177578-18177916 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 13 |
| Conread position: | 735-1060 |
| Cow position: | chr25:11831188-11830867 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 144, 39 |
| Conread position: | 811-1060 |
| Cow position: | chr25:11931809-11931557 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 30 |
| Conread position: | 836-1060 |
| Cow position: | chr25:13454588-13454359 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 71, 128 |
| Conread position: | 848-1060 |
| Cow position: | chr25:18212896-18212685 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 103, 58 |
| Conread position: | 861-1060 |
| Cow position: | chr25:34506671-34506466 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 876-1065 |
| Cow position: | chr25:17655472-17655669 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 905-1060 |
| Cow position: | chr25:11041429-11041589 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 46, 21 |
Show alignments to all cow chromosomes.