Cow genome map

Conread name: Ss1.1-Tra1-TCH01F020058.5

Conread position: 1-170
Cow position:
Alignm length: 181
Alignm identity: 132
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 90, 110

Conread position: 1-182
Cow position:
Alignm length: 193
Alignm identity: 144
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 87, 117

Conread position: 1-184
Cow position:
Alignm length: 191
Alignm identity: 137
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 76, 109

Conread position: 1-212
Cow position:
Alignm length: 222
Alignm identity: 165
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 74, 196

Conread position: 1-239
Cow position:
Alignm length: 252
Alignm identity: 152
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 74, 79

Conread position: 1-244
Cow position:
Alignm length: 257
Alignm identity: 187
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 75, 46

Conread position: 1-248
Cow position:
Alignm length: 261
Alignm identity: 195
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 74, 110

Conread position: 1-261
Cow position:
Alignm length: 273
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 0

Conread position: 1-266
Cow position:
Alignm length: 278
Alignm identity: 207
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 74, 94

Conread position: 1-266
Cow position:
Alignm length: 272
Alignm identity: 186
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 84, 155

Conread position: 1-268
Cow position:
Alignm length: 283
Alignm identity: 191
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 53, 28

Conread position: 1-269
Cow position:
Alignm length: 282
Alignm identity: 209
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 74, 110

Conread position: 1-269
Cow position:
Alignm length: 279
Alignm identity: 198
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 92, 238

Conread position: 1-269
Cow position:
Alignm length: 284
Alignm identity: 205
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 14, 126

Conread position: 1-270
Cow position:
Alignm length: 279
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 106

Conread position: 1-270
Cow position:
Alignm length: 283
Alignm identity: 208
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 84, 117

Conread position: 1-271
Cow position:
Alignm length: 284
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 110

Conread position: 1-271
Cow position:
Alignm length: 285
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 110

Conread position: 1-271
Cow position:
Alignm length: 284
Alignm identity: 208
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 74, 28

Conread position: 1-271
Cow position:
Alignm length: 286
Alignm identity: 209
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 90, 124

Conread position: 1-271
Cow position:
Alignm length: 285
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 124

Conread position: 1-271
Cow position:
Alignm length: 284
Alignm identity: 207
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 92, 119

Conread position: 1-271
Cow position:
Alignm length: 284
Alignm identity: 206
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 75, 40

Conread position: 1-271
Cow position:
Alignm length: 284
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 110

Conread position: 1-271
Cow position:
Alignm length: 288
Alignm identity: 214
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 45, 123

Conread position: 1-271
Cow position:
Alignm length: 287
Alignm identity: 210
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 43, 62

Conread position: 1-271
Cow position:
Alignm length: 284
Alignm identity: 202
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 92, 110

Conread position: 1-271
Cow position:
Alignm length: 283
Alignm identity: 205
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 74, 198

Conread position: 1-271
Cow position:
Alignm length: 287
Alignm identity: 213
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 74, 28

Conread position: 1-271
Cow position:
Alignm length: 280
Alignm identity: 204
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 74, 163

Conread position: 1-271
Cow position:
Alignm length: 285
Alignm identity: 208
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 90, 110

Conread position: 1-271
Cow position:
Alignm length: 284
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 124

Conread position: 1-271
Cow position:
Alignm length: 279
Alignm identity: 192
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 94, 39

Conread position: 1-271
Cow position:
Alignm length: 284
Alignm identity: 208
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 74, 110

Conread position: 1-271
Cow position:
Alignm length: 282
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 0

Conread position: 1-271
Cow position:
Alignm length: 284
Alignm identity: 214
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 74, 44

Conread position: 1-271
Cow position:
Alignm length: 282
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 61

Conread position: 1-271
Cow position:
Alignm length: 283
Alignm identity: 207
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 74, 110

Conread position: 1-271
Cow position:
Alignm length: 286
Alignm identity: 209
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 38, 112

Conread position: 1-271
Cow position:
Alignm length: 282
Alignm identity: 200
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 74, 40

Conread position: 3-263
Cow position:
Alignm length: 273
Alignm identity: 189
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 105, 0

Conread position: 8-271
Cow position:
Alignm length: 280
Alignm identity: 202
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 74, 21

Conread position: 8-271
Cow position:
Alignm length: 271
Alignm identity: 202
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 67, 118

Conread position: 17-271
Cow position:
Alignm length: 267
Alignm identity: 196
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 58, 63

Conread position: 46-271
Cow position:
Alignm length: 239
Alignm identity: 171
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 47, 72

Conread position: 77-271
Cow position:
Alignm length: 203
Alignm identity: 150
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 14, 37

Conread position: 529-1019
Cow position:
Alignm length: 504
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 161

Conread position: 529-1060
Cow position:
Alignm length: 546
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 56

Conread position: 531-681
Cow position:
Alignm length: 154
Alignm identity: 112
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 26, 0

Conread position: 531-704
Cow position:
Alignm length: 179
Alignm identity: 129
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 17, 0

Conread position: 531-708
Cow position:
Alignm length: 181
Alignm identity: 128
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 34, 27

Conread position: 531-816
Cow position:
Alignm length: 290
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 194

Conread position: 531-820
Cow position:
Alignm length: 294
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 106

Conread position: 531-860
Cow position:
Alignm length: 334
Alignm identity: 218
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 26, 148

Conread position: 531-941
Cow position:
Alignm length: 415
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 283

Conread position: 531-1009
Cow position:
Alignm length: 499
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 478

Conread position: 531-1043
Cow position:
Alignm length: 523
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 86

Conread position: 531-1056
Cow position:
Alignm length: 539
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 43

Conread position: 531-1058
Cow position:
Alignm length: 537
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 232

Conread position: 531-1060
Cow position:
Alignm length: 539
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 285

Conread position: 531-1060
Cow position:
Alignm length: 552
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 203

Conread position: 531-1060
Cow position:
Alignm length: 538
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 216

Conread position: 531-1060
Cow position:
Alignm length: 538
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 531-1060
Cow position:
Alignm length: 536
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 407

Conread position: 531-1060
Cow position:
Alignm length: 539
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 531-1060
Cow position:
Alignm length: 540
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 267

Conread position: 531-1060
Cow position:
Alignm length: 541
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 57

Conread position: 531-1060
Cow position:
Alignm length: 537
Alignm identity: 330
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 21, 59

Conread position: 531-1060
Cow position:
Alignm length: 540
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 106

Conread position: 531-1060
Cow position:
Alignm length: 543
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 276

Conread position: 531-1060
Cow position:
Alignm length: 539
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 226

Conread position: 531-1060
Cow position:
Alignm length: 543
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 506

Conread position: 531-1060
Cow position:
Alignm length: 540
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 0

Conread position: 531-1060
Cow position:
Alignm length: 542
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 531-1060
Cow position:
Alignm length: 540
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 177

Conread position: 531-1060
Cow position:
Alignm length: 537
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 57

Conread position: 531-1060
Cow position:
Alignm length: 554
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 221

Conread position: 531-1060
Cow position:
Alignm length: 545
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 92

Conread position: 531-1060
Cow position:
Alignm length: 540
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 157

Conread position: 531-1060
Cow position:
Alignm length: 555
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 475

Conread position: 531-1064
Cow position:
Alignm length: 540
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 140

Conread position: 531-1065
Cow position:
Alignm length: 553
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 84

Conread position: 531-1066
Cow position:
Alignm length: 546
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 64

Conread position: 531-1067
Cow position:
Alignm length: 549
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 122

Conread position: 533-731
Cow position:
Alignm length: 202
Alignm identity: 151
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 24, 137

Conread position: 533-792
Cow position:
Alignm length: 263
Alignm identity: 185
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 186, 25

Conread position: 533-1060
Cow position:
Alignm length: 536
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 5

Conread position: 534-1058
Cow position:
Alignm length: 535
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 0

Conread position: 535-746
Cow position:
Alignm length: 217
Alignm identity: 151
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 21, 108

Conread position: 535-905
Cow position:
Alignm length: 375
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 535-1060
Cow position:
Alignm length: 535
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 135

Conread position: 536-1001
Cow position:
Alignm length: 474
Alignm identity: 293
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 51, 60

Conread position: 536-1060
Cow position:
Alignm length: 541
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 77

Conread position: 546-1060
Cow position:
Alignm length: 524
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 124

Conread position: 548-1057
Cow position:
Alignm length: 513
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 64

Conread position: 553-1021
Cow position:
Alignm length: 470
Alignm identity: 285
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 403, 19

Conread position: 555-868
Cow position:
Alignm length: 315
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 134

Conread position: 556-987
Cow position:
Alignm length: 435
Alignm identity: 277
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 115, 49

Conread position: 558-1006
Cow position:
Alignm length: 480
Alignm identity: 311
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 112, 100

Conread position: 559-802
Cow position:
Alignm length: 261
Alignm identity: 180
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 42, 0

Conread position: 563-1060
Cow position:
Alignm length: 507
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 208

Conread position: 574-1060
Cow position:
Alignm length: 502
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 157

Conread position: 593-1059
Cow position:
Alignm length: 473
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 402

Conread position: 598-903
Cow position:
Alignm length: 309
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 212

Conread position: 607-1068
Cow position:
Alignm length: 473
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 104

Conread position: 612-868
Cow position:
Alignm length: 263
Alignm identity: 182
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 57, 15

Conread position: 620-1060
Cow position:
Alignm length: 451
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 92

Conread position: 634-1060
Cow position:
Alignm length: 442
Alignm identity: 286
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 37, 208

Conread position: 645-1060
Cow position:
Alignm length: 418
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 197

Conread position: 650-860
Cow position:
Alignm length: 212
Alignm identity: 154
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 23, 115

Conread position: 652-1043
Cow position:
Alignm length: 401
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 265, 15

Conread position: 667-1065
Cow position:
Alignm length: 408
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 104

Conread position: 672-1021
Cow position:
Alignm length: 359
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 0

Conread position: 689-1004
Cow position:
Alignm length: 321
Alignm identity: 209
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 83, 137

Conread position: 689-1058
Cow position:
Alignm length: 375
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 15

Conread position: 698-1060
Cow position:
Alignm length: 371
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 43

Conread position: 707-1022
Cow position:
Alignm length: 318
Alignm identity: 207
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 96, 200

Conread position: 715-1057
Cow position:
Alignm length: 347
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 236

Conread position: 721-1060
Cow position:
Alignm length: 355
Alignm identity: 239
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 85, 47

Conread position: 729-1066
Cow position:
Alignm length: 342
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 187

Conread position: 735-948
Cow position:
Alignm length: 217
Alignm identity: 153
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 130, 15

Conread position: 735-1068
Cow position:
Alignm length: 340
Alignm identity: 230
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 216, 149

Conread position: 736-1060
Cow position:
Alignm length: 331
Alignm identity: 212
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 215, 126

Conread position: 740-1060
Cow position:
Alignm length: 327
Alignm identity: 217
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 211, 46

Conread position: 763-1053
Cow position:
Alignm length: 292
Alignm identity: 183
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 188, 20

Conread position: 785-1060
Cow position:
Alignm length: 282
Alignm identity: 197
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 165, 0

Conread position: 791-1060
Cow position:
Alignm length: 271
Alignm identity: 184
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 159, 199

Conread position: 799-1060
Cow position:
Alignm length: 270
Alignm identity: 187
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 110, 70

Conread position: 812-1060
Cow position:
Alignm length: 250
Alignm identity: 168
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 140, 95

Conread position: 812-1060
Cow position:
Alignm length: 255
Alignm identity: 186
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 105, 65

Conread position: 818-1057
Cow position:
Alignm length: 250
Alignm identity: 183
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 60, 137

Conread position: 842-1064
Cow position:
Alignm length: 229
Alignm identity: 162
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 108, 0

Conread position: 858-1060
Cow position:
Alignm length: 215
Alignm identity: 147
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 52, 194

Conread position: 892-1060
Cow position:
Alignm length: 175
Alignm identity: 128
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 59, 15

Show alignments to all cow chromosomes.