Cow genome map

Conread name: Ss1.1-Tra1-TCH01F020058.5

Conread position: 1-132
Cow position:
Alignm length: 137
Alignm identity: 111
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 74, 119

Conread position: 1-185
Cow position:
Alignm length: 195
Alignm identity: 138
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 90, 0

Conread position: 1-223
Cow position:
Alignm length: 233
Alignm identity: 173
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 90, 0

Conread position: 1-248
Cow position:
Alignm length: 261
Alignm identity: 189
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 33, 203

Conread position: 1-262
Cow position:
Alignm length: 275
Alignm identity: 201
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 90, 110

Conread position: 1-266
Cow position:
Alignm length: 277
Alignm identity: 196
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 90, 179

Conread position: 1-268
Cow position:
Alignm length: 285
Alignm identity: 208
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 90, 110

Conread position: 1-268
Cow position:
Alignm length: 281
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 110

Conread position: 1-269
Cow position:
Alignm length: 281
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 0

Conread position: 1-269
Cow position:
Alignm length: 282
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 110

Conread position: 1-270
Cow position:
Alignm length: 283
Alignm identity: 204
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 74, 110

Conread position: 1-270
Cow position:
Alignm length: 280
Alignm identity: 187
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 23, 42

Conread position: 1-270
Cow position:
Alignm length: 284
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 1-271
Cow position:
Alignm length: 284
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 110

Conread position: 1-271
Cow position:
Alignm length: 287
Alignm identity: 205
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 75, 0

Conread position: 1-271
Cow position:
Alignm length: 281
Alignm identity: 198
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 106, 45

Conread position: 1-271
Cow position:
Alignm length: 283
Alignm identity: 205
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 90, 149

Conread position: 1-271
Cow position:
Alignm length: 283
Alignm identity: 204
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 105, 0

Conread position: 1-271
Cow position:
Alignm length: 284
Alignm identity: 213
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 74, 110

Conread position: 1-271
Cow position:
Alignm length: 283
Alignm identity: 206
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 92, 182

Conread position: 1-271
Cow position:
Alignm length: 282
Alignm identity: 211
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 74, 109

Conread position: 1-271
Cow position:
Alignm length: 283
Alignm identity: 196
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 101, 0

Conread position: 1-271
Cow position:
Alignm length: 285
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 110

Conread position: 1-271
Cow position:
Alignm length: 284
Alignm identity: 204
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 78, 110

Conread position: 1-271
Cow position:
Alignm length: 284
Alignm identity: 205
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 90, 110

Conread position: 1-271
Cow position:
Alignm length: 282
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 0

Conread position: 1-271
Cow position:
Alignm length: 283
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 110

Conread position: 1-271
Cow position:
Alignm length: 283
Alignm identity: 206
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 90, 28

Conread position: 1-271
Cow position:
Alignm length: 283
Alignm identity: 207
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 74, 0

Conread position: 1-271
Cow position:
Alignm length: 284
Alignm identity: 207
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 73, 124

Conread position: 1-271
Cow position:
Alignm length: 284
Alignm identity: 208
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 90, 110

Conread position: 1-271
Cow position:
Alignm length: 285
Alignm identity: 200
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 90, 110

Conread position: 1-271
Cow position:
Alignm length: 285
Alignm identity: 208
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 74, 110

Conread position: 1-271
Cow position:
Alignm length: 283
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 172

Conread position: 1-271
Cow position:
Alignm length: 283
Alignm identity: 207
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 92, 116

Conread position: 1-271
Cow position:
Alignm length: 284
Alignm identity: 213
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 74, 124

Conread position: 1-271
Cow position:
Alignm length: 284
Alignm identity: 209
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 74, 55

Conread position: 1-271
Cow position:
Alignm length: 285
Alignm identity: 210
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 50, 118

Conread position: 1-271
Cow position:
Alignm length: 284
Alignm identity: 203
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 74, 110

Conread position: 1-272
Cow position:
Alignm length: 284
Alignm identity: 205
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 90, 109

Conread position: 1-272
Cow position:
Alignm length: 285
Alignm identity: 210
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 74, 110

Conread position: 2-271
Cow position:
Alignm length: 283
Alignm identity: 207
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 73, 109

Conread position: 4-184
Cow position:
Alignm length: 187
Alignm identity: 135
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 13, 8

Conread position: 8-268
Cow position:
Alignm length: 274
Alignm identity: 206
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 68, 54

Conread position: 8-269
Cow position:
Alignm length: 275
Alignm identity: 201
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 67, 103

Conread position: 9-271
Cow position:
Alignm length: 275
Alignm identity: 192
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 39, 110

Conread position: 15-271
Cow position:
Alignm length: 269
Alignm identity: 197
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 78, 103

Conread position: 16-262
Cow position:
Alignm length: 262
Alignm identity: 179
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 10, 27

Conread position: 54-271
Cow position:
Alignm length: 234
Alignm identity: 166
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 39, 64

Conread position: 120-264
Cow position:
Alignm length: 147
Alignm identity: 110
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 109, 0

Conread position: 528-1066
Cow position:
Alignm length: 551
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 12

Conread position: 529-1060
Cow position:
Alignm length: 534
Alignm identity: 326
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 143, 33

Conread position: 529-1060
Cow position:
Alignm length: 544
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 124

Conread position: 529-1060
Cow position:
Alignm length: 545
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 82

Conread position: 529-1064
Cow position:
Alignm length: 545
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 241

Conread position: 531-709
Cow position:
Alignm length: 183
Alignm identity: 135
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 26, 0

Conread position: 531-787
Cow position:
Alignm length: 261
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 531-820
Cow position:
Alignm length: 294
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 0

Conread position: 531-851
Cow position:
Alignm length: 330
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 531-860
Cow position:
Alignm length: 334
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 233

Conread position: 531-868
Cow position:
Alignm length: 343
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 531-899
Cow position:
Alignm length: 373
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 531-948
Cow position:
Alignm length: 422
Alignm identity: 130
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 26, 0

Conread position: 531-949
Cow position:
Alignm length: 426
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 531-966
Cow position:
Alignm length: 441
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 379

Conread position: 531-994
Cow position:
Alignm length: 474
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 423

Conread position: 531-1006
Cow position:
Alignm length: 484
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 54

Conread position: 531-1016
Cow position:
Alignm length: 490
Alignm identity: 317
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 26, 71

Conread position: 531-1019
Cow position:
Alignm length: 505
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 286

Conread position: 531-1043
Cow position:
Alignm length: 530
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 531-1058
Cow position:
Alignm length: 538
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 106

Conread position: 531-1058
Cow position:
Alignm length: 537
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 242

Conread position: 531-1060
Cow position:
Alignm length: 535
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 88

Conread position: 531-1060
Cow position:
Alignm length: 535
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 463

Conread position: 531-1060
Cow position:
Alignm length: 542
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 52

Conread position: 531-1060
Cow position:
Alignm length: 539
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 43

Conread position: 531-1060
Cow position:
Alignm length: 536
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 167

Conread position: 531-1060
Cow position:
Alignm length: 541
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 271

Conread position: 531-1060
Cow position:
Alignm length: 546
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 15

Conread position: 531-1060
Cow position:
Alignm length: 540
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 106

Conread position: 531-1060
Cow position:
Alignm length: 539
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 89

Conread position: 531-1060
Cow position:
Alignm length: 548
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 467

Conread position: 531-1060
Cow position:
Alignm length: 541
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 99

Conread position: 531-1060
Cow position:
Alignm length: 551
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 531-1060
Cow position:
Alignm length: 542
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 0

Conread position: 531-1060
Cow position:
Alignm length: 542
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 162

Conread position: 531-1060
Cow position:
Alignm length: 542
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 430

Conread position: 531-1060
Cow position:
Alignm length: 540
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 231

Conread position: 531-1060
Cow position:
Alignm length: 537
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 102

Conread position: 531-1060
Cow position:
Alignm length: 538
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 531-1061
Cow position:
Alignm length: 544
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 344

Conread position: 531-1064
Cow position:
Alignm length: 547
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 236

Conread position: 531-1064
Cow position:
Alignm length: 544
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 531-1064
Cow position:
Alignm length: 544
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 240

Conread position: 531-1065
Cow position:
Alignm length: 575
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 411

Conread position: 531-1068
Cow position:
Alignm length: 546
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 138

Conread position: 532-1058
Cow position:
Alignm length: 539
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 129

Conread position: 533-914
Cow position:
Alignm length: 387
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 151

Conread position: 533-1064
Cow position:
Alignm length: 549
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 280

Conread position: 534-1060
Cow position:
Alignm length: 547
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 89

Conread position: 534-1060
Cow position:
Alignm length: 540
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 24

Conread position: 535-1058
Cow position:
Alignm length: 542
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 45

Conread position: 535-1064
Cow position:
Alignm length: 544
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 234

Conread position: 536-1060
Cow position:
Alignm length: 536
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 238

Conread position: 536-1060
Cow position:
Alignm length: 535
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 67

Conread position: 537-746
Cow position:
Alignm length: 216
Alignm identity: 158
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 24, 147

Conread position: 543-911
Cow position:
Alignm length: 372
Alignm identity: 231
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 27, 19

Conread position: 543-915
Cow position:
Alignm length: 379
Alignm identity: 254
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 14, 158

Conread position: 544-860
Cow position:
Alignm length: 318
Alignm identity: 219
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 289, 61

Conread position: 558-831
Cow position:
Alignm length: 281
Alignm identity: 197
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 114, 200

Conread position: 558-1060
Cow position:
Alignm length: 513
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 250

Conread position: 558-1060
Cow position:
Alignm length: 514
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 51

Conread position: 562-1060
Cow position:
Alignm length: 507
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 189

Conread position: 566-1059
Cow position:
Alignm length: 503
Alignm identity: 321
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 105, 25

Conread position: 566-1060
Cow position:
Alignm length: 501
Alignm identity: 319
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 455, 49

Conread position: 567-1060
Cow position:
Alignm length: 504
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 50

Conread position: 591-1060
Cow position:
Alignm length: 477
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 244

Conread position: 597-1031
Cow position:
Alignm length: 438
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 13

Conread position: 601-1060
Cow position:
Alignm length: 468
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 67

Conread position: 606-1021
Cow position:
Alignm length: 419
Alignm identity: 270
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 65, 94

Conread position: 614-868
Cow position:
Alignm length: 258
Alignm identity: 170
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 57, 95

Conread position: 618-929
Cow position:
Alignm length: 315
Alignm identity: 218
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 52, 77

Conread position: 635-1035
Cow position:
Alignm length: 405
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 120

Conread position: 637-1055
Cow position:
Alignm length: 423
Alignm identity: 268
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 32, 83

Conread position: 654-1058
Cow position:
Alignm length: 411
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 20

Conread position: 671-1060
Cow position:
Alignm length: 395
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 280, 205

Conread position: 674-1060
Cow position:
Alignm length: 389
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 233

Conread position: 703-1058
Cow position:
Alignm length: 371
Alignm identity: 248
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 125, 42

Conread position: 714-1011
Cow position:
Alignm length: 300
Alignm identity: 201
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 236, 0

Conread position: 721-1000
Cow position:
Alignm length: 282
Alignm identity: 196
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 107, 0

Conread position: 721-1060
Cow position:
Alignm length: 361
Alignm identity: 245
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 187, 33

Conread position: 723-1060
Cow position:
Alignm length: 349
Alignm identity: 246
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 51, 199

Conread position: 728-1060
Cow position:
Alignm length: 342
Alignm identity: 246
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 223, 13

Conread position: 736-1060
Cow position:
Alignm length: 327
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 14

Conread position: 736-1066
Cow position:
Alignm length: 336
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 149

Conread position: 746-1060
Cow position:
Alignm length: 321
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 54

Conread position: 756-1016
Cow position:
Alignm length: 264
Alignm identity: 174
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 119, 32

Conread position: 764-1055
Cow position:
Alignm length: 294
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 95

Conread position: 812-1060
Cow position:
Alignm length: 267
Alignm identity: 180
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 45, 0

Conread position: 815-1060
Cow position:
Alignm length: 252
Alignm identity: 179
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 135, 0

Conread position: 818-1060
Cow position:
Alignm length: 245
Alignm identity: 168
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 7, 173

Conread position: 858-1060
Cow position:
Alignm length: 211
Alignm identity: 147
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 51, 0

Conread position: 858-1065
Cow position:
Alignm length: 212
Alignm identity: 156
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 93, 30

Conread position: 892-1060
Cow position:
Alignm length: 177
Alignm identity: 129
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 9, 139

Show alignments to all cow chromosomes.