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Cow genome map

           
Conread name:
           
Ss1.1-Tra1-TCH01F020058.5
        

               
Conread position:
               
1-125
               

               
Cow position:
               
chr5:49119078-49118951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
74, 119
               

               
Conread position:
               
1-126
               

               
Cow position:
               
chr5:6155019-6154890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
74, 110
               

               
Conread position:
               
1-175
               

               
Cow position:
               
chr5:26079025-26078847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
90, 110
               

               
Conread position:
               
1-194
               

               
Cow position:
               
chr5:3503903-3503700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
74, 110
               

               
Conread position:
               
1-202
               

               
Cow position:
               
chr5:31706769-31706981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
90, 124
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr5:54932023-54931792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
78, 109
               

               
Conread position:
               
1-243
               

               
Cow position:
               
chr5:46660238-46660483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
93, 28
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr5:10843224-10842949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
78, 213
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr5:47894337-47894063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
98, 28
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr5:3786127-3786398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
74, 189
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr5:4385444-4385719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
82, 109
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr5:46644878-46645153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
90, 110
               

               
Conread position:
               
1-270
               

               
Cow position:
               
chr5:6588825-6588544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 264
               

               
Conread position:
               
1-270
               

               
Cow position:
               
chr5:26084380-26084105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
107, 238
               

               
Conread position:
               
1-270
               

               
Cow position:
               
chr5:54792438-54792160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 124
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr5:241397-241679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
90, 110
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr5:415520-415239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr5:2531455-2531732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
78, 195
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr5:2914650-2914928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
73, 92
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr5:3964645-3964926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
90, 124
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr5:4019003-4018722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
92, 28
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr5:4069416-4069698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr5:4089266-4089548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
68, 117
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr5:7274025-7274309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 119
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr5:10483043-10483325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr5:10776069-10775790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
90, 124
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr5:10919021-10919303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr5:12643524-12643242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr5:18115651-18115372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
82, 10
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr5:18122274-18121999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
90, 192
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr5:18663987-18664269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr5:18666189-18666471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr5:23960120-23959838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
92, 117
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr5:24098869-24099150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 109
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr5:27909077-27908795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr5:31101425-31101147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr5:34696803-34697081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
75, 101
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr5:35300294-35300576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 110
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr5:37732548-37732829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 28
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr5:41528558-41528281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
90, 184
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr5:44459678-44459960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 124
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr5:46664198-46664469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
78, 124
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr5:46738377-46738096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 110
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr5:46776274-46776556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr5:48468084-48467803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
90, 110
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr5:48808533-48808261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
74, 110
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr5:55628188-55628469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
74, 20
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr5:57482346-57482061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
38, 120
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr5:59060813-59061091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
90, 110
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr5:64781816-64781537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
74, 110
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr5:73489359-73489080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
74, 196
               

               
Conread position:
               
3-273
               

               
Cow position:
               
chr5:39246809-39246527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
39, 179
               

               
Conread position:
               
5-241
               

               
Cow position:
               
chr5:27002233-27002479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
86, 70
               

               
Conread position:
               
5-271
               

               
Cow position:
               
chr5:14380342-14380619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
88, 113
               

               
Conread position:
               
9-271
               

               
Cow position:
               
chr5:30579535-30579805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
66, 187
               

               
Conread position:
               
18-271
               

               
Cow position:
               
chr5:58196245-58196503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
85, 30
               

               
Conread position:
               
29-271
               

               
Cow position:
               
chr5:32772716-32772967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
64, 96
               

               
Conread position:
               
33-270
               

               
Cow position:
               
chr5:23228923-23229164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
54, 8
               

               
Conread position:
               
33-271
               

               
Cow position:
               
chr5:14785133-14784884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
58, 164
               

               
Conread position:
               
41-271
               

               
Cow position:
               
chr5:45700555-45700792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
50, 84
               

               
Conread position:
               
41-272
               

               
Cow position:
               
chr5:28011890-28012134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
43-271
               

               
Cow position:
               
chr5:47830830-47830594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
50, 105
               

               
Conread position:
               
56-271
               

               
Cow position:
               
chr5:46807562-46807789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
76-271
               

               
Cow position:
               
chr5:1341759-1341554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
15, 40
               

               
Conread position:
               
129-271
               

               
Cow position:
               
chr5:4757829-4757686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
95, 7
               

               
Conread position:
               
129-271
               

               
Cow position:
               
chr5:11625033-11624890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
95, 77
               

               
Conread position:
               
129-271
               

               
Cow position:
               
chr5:38073365-38073509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
129-271
               

               
Cow position:
               
chr5:44784580-44784436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
129-271
               

               
Cow position:
               
chr5:45181811-45181667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
146-270
               

               
Cow position:
               
chr5:6154830-6154704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
220-1064
               

               
Cow position:
               
chr5:59282478-59283326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
852
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
452, 593
               

               
Conread position:
               
243-1060
               

               
Cow position:
               
chr5:308145-307321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
825
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
675, 0
               

               
Conread position:
               
528-1058
               

               
Cow position:
               
chr5:47894074-47893541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 66
               

               
Conread position:
               
528-1059
               

               
Cow position:
               
chr5:75624170-75624694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
11, 60
               

               
Conread position:
               
529-1057
               

               
Cow position:
               
chr5:6588558-6588018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 109
               

               
Conread position:
               
529-1058
               

               
Cow position:
               
chr5:46629721-46629175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 45
               

               
Conread position:
               
530-1060
               

               
Cow position:
               
chr5:41956889-41956364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
27, 10
               

               
Conread position:
               
531-696
               

               
Cow position:
               
chr5:14380608-14380777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
531-711
               

               
Cow position:
               
chr5:41465496-41465678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
26, 138
               

               
Conread position:
               
531-738
               

               
Cow position:
               
chr5:31101158-31100950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
26, 82
               

               
Conread position:
               
531-758
               

               
Cow position:
               
chr5:4089537-4089764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
26, 82
               

               
Conread position:
               
531-765
               

               
Cow position:
               
chr5:2531721-2531956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
28, 216
               

               
Conread position:
               
531-828
               

               
Cow position:
               
chr5:44784447-44784146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
531-839
               

               
Cow position:
               
chr5:28023985-28024289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
224, 30
               

               
Conread position:
               
531-851
               

               
Cow position:
               
chr5:7274298-7274619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 237
               

               
Conread position:
               
531-878
               

               
Cow position:
               
chr5:59061080-59061431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
531-894
               

               
Cow position:
               
chr5:241668-242028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 77
               

               
Conread position:
               
531-899
               

               
Cow position:
               
chr5:54824324-54823956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
126, 18
               

               
Conread position:
               
531-907
               

               
Cow position:
               
chr5:49591628-49591253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 57
               

               
Conread position:
               
531-909
               

               
Cow position:
               
chr5:46776545-46776918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 86
               

               
Conread position:
               
531-916
               

               
Cow position:
               
chr5:43003558-43003936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
32, 123
               

               
Conread position:
               
531-1005
               

               
Cow position:
               
chr5:18273234-18273690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
26, 89
               

               
Conread position:
               
531-1021
               

               
Cow position:
               
chr5:44459949-44460444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
531-1024
               

               
Cow position:
               
chr5:18401234-18400727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 383
               

               
Conread position:
               
531-1026
               

               
Cow position:
               
chr5:28012122-28012617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 64
               

               
Conread position:
               
531-1056
               

               
Cow position:
               
chr5:10775801-10775267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 69
               

               
Conread position:
               
531-1057
               

               
Cow position:
               
chr5:14784895-14784364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 164
               

               
Conread position:
               
531-1057
               

               
Cow position:
               
chr5:23959849-23959326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 314
               

               
Conread position:
               
531-1059
               

               
Cow position:
               
chr5:4757697-4757172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 359
               

               
Conread position:
               
531-1059
               

               
Cow position:
               
chr5:46807778-46808316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 503
               

               
Conread position:
               
531-1060
               

               
Cow position:
               
chr5:1341565-1341027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 319
               

               
Conread position:
               
531-1060
               

               
Cow position:
               
chr5:2914917-2915455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 241
               

               
Conread position:
               
531-1060
               

               
Cow position:
               
chr5:3503649-3503103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 157
               

               
Conread position:
               
531-1060
               

               
Cow position:
               
chr5:3786389-3786932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 140
               

               
Conread position:
               
531-1060
               

               
Cow position:
               
chr5:3964915-3965452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 215
               

               
Conread position:
               
531-1060
               

               
Cow position:
               
chr5:4018733-4018189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 383
               

               
Conread position:
               
531-1060
               

               
Cow position:
               
chr5:4385710-4386246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 106
               

               
Conread position:
               
531-1060
               

               
Cow position:
               
chr5:10842912-10842379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 104
               

               
Conread position:
               
531-1060
               

               
Cow position:
               
chr5:12643253-12642739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 57
               

               
Conread position:
               
531-1060
               

               
Cow position:
               
chr5:18122010-18121477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 82
               

               
Conread position:
               
531-1060
               

               
Cow position:
               
chr5:24099139-24099671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 98
               

               
Conread position:
               
531-1060
               

               
Cow position:
               
chr5:27908806-27908263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 159
               

               
Conread position:
               
531-1060
               

               
Cow position:
               
chr5:30579794-30580345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
531-1060
               

               
Cow position:
               
chr5:31707017-31707568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 515
               

               
Conread position:
               
531-1060
               

               
Cow position:
               
chr5:35300565-35301104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 261
               

               
Conread position:
               
531-1060
               

               
Cow position:
               
chr5:35526273-35526815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
557
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 102
               

               
Conread position:
               
531-1060
               

               
Cow position:
               
chr5:37732818-37733352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 156
               

               
Conread position:
               
531-1060
               

               
Cow position:
               
chr5:42505470-42506010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 504
               

               
Conread position:
               
531-1060
               

               
Cow position:
               
chr5:45700781-45701320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 257
               

               
Conread position:
               
531-1060
               

               
Cow position:
               
chr5:46005386-46004850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 262
               

               
Conread position:
               
531-1060
               

               
Cow position:
               
chr5:46738107-46737571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 309
               

               
Conread position:
               
531-1060
               

               
Cow position:
               
chr5:47830605-47830072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 391
               

               
Conread position:
               
531-1060
               

               
Cow position:
               
chr5:48808272-48807733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
531-1060
               

               
Cow position:
               
chr5:49519030-49519566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 129
               

               
Conread position:
               
531-1060
               

               
Cow position:
               
chr5:54792170-54791627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 230
               

               
Conread position:
               
531-1060
               

               
Cow position:
               
chr5:57482072-57481533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
531-1060
               

               
Cow position:
               
chr5:58196492-58197021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 113
               

               
Conread position:
               
531-1060
               

               
Cow position:
               
chr5:64781548-64781010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 192
               

               
Conread position:
               
531-1063
               

               
Cow position:
               
chr5:73489091-73488551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 292
               

               
Conread position:
               
531-1064
               

               
Cow position:
               
chr5:10919292-10919830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 369
               

               
Conread position:
               
531-1064
               

               
Cow position:
               
chr5:34697070-34697611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
531-1064
               

               
Cow position:
               
chr5:38073498-38074041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
531-1064
               

               
Cow position:
               
chr5:45181678-45181135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
531-1065
               

               
Cow position:
               
chr5:4069687-4070219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 252
               

               
Conread position:
               
531-1068
               

               
Cow position:
               
chr5:55628458-55629006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
531-1068
               

               
Cow position:
               
chr5:58152304-58151766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 53
               

               
Conread position:
               
532-1060
               

               
Cow position:
               
chr5:26078729-26078187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 105
               

               
Conread position:
               
533-705
               

               
Cow position:
               
chr5:18666462-18666638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
533-948
               

               
Cow position:
               
chr5:29766357-29766784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 134
               

               
Conread position:
               
533-1041
               

               
Cow position:
               
chr5:27002486-27002989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 78
               

               
Conread position:
               
533-1060
               

               
Cow position:
               
chr5:18664260-18664789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 382
               

               
Conread position:
               
533-1060
               

               
Cow position:
               
chr5:28241523-28242054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 55
               

               
Conread position:
               
533-1060
               

               
Cow position:
               
chr5:41961255-41960731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 190
               

               
Conread position:
               
534-746
               

               
Cow position:
               
chr5:415247-415032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
22, 128
               

               
Conread position:
               
534-1058
               

               
Cow position:
               
chr5:53625421-53624919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 122
               

               
Conread position:
               
534-1060
               

               
Cow position:
               
chr5:32363450-32363956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 54
               

               
Conread position:
               
535-1016
               

               
Cow position:
               
chr5:46645428-46645915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 214
               

               
Conread position:
               
538-1015
               

               
Cow position:
               
chr5:54861574-54861121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 13
               

               
Conread position:
               
540-1060
               

               
Cow position:
               
chr5:51770471-51769953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 28
               

               
Conread position:
               
542-786
               

               
Cow position:
               
chr5:59144719-59144967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
15, 213
               

               
Conread position:
               
542-1060
               

               
Cow position:
               
chr5:20428538-20429064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
32, 171
               

               
Conread position:
               
543-962
               

               
Cow position:
               
chr5:59639264-59639677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 15
               

               
Conread position:
               
546-1060
               

               
Cow position:
               
chr5:41528290-41527790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 326
               

               
Conread position:
               
551-958
               

               
Cow position:
               
chr5:32308902-32308495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 149
               

               
Conread position:
               
553-819
               

               
Cow position:
               
chr5:37107050-37106787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
121, 193
               

               
Conread position:
               
558-830
               

               
Cow position:
               
chr5:51335764-51335491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
558-1058
               

               
Cow position:
               
chr5:32773271-32773769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 194
               

               
Conread position:
               
558-1058
               

               
Cow position:
               
chr5:34902690-34903201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 59
               

               
Conread position:
               
558-1060
               

               
Cow position:
               
chr5:28950369-28949876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 319
               

               
Conread position:
               
559-794
               

               
Cow position:
               
chr5:23687544-23687318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
112, 76
               

               
Conread position:
               
559-987
               

               
Cow position:
               
chr5:33187270-33187681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 46
               

               
Conread position:
               
560-1001
               

               
Cow position:
               
chr5:49758161-49757729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 25
               

               
Conread position:
               
567-923
               

               
Cow position:
               
chr5:49130057-49130417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
103, 198
               

               
Conread position:
               
568-1068
               

               
Cow position:
               
chr5:6154393-6153888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 236
               

               
Conread position:
               
572-983
               

               
Cow position:
               
chr5:39246301-39245889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 126
               

               
Conread position:
               
583-1005
               

               
Cow position:
               
chr5:22992194-22992609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
11, 52
               

               
Conread position:
               
590-883
               

               
Cow position:
               
chr5:26067374-26067074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
34, 187
               

               
Conread position:
               
599-1043
               

               
Cow position:
               
chr5:32947594-32948051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
619-1067
               

               
Cow position:
               
chr5:1227243-1227692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 10
               

               
Conread position:
               
636-1021
               

               
Cow position:
               
chr5:41554755-41554374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 83
               

               
Conread position:
               
638-999
               

               
Cow position:
               
chr5:27056105-27055738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 360
               

               
Conread position:
               
651-938
               

               
Cow position:
               
chr5:53703569-53703284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
20, 45
               

               
Conread position:
               
662-1056
               

               
Cow position:
               
chr5:23669520-23669127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
14, 35
               

               
Conread position:
               
667-1060
               

               
Cow position:
               
chr5:46664624-46665023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
283, 0
               

               
Conread position:
               
671-1056
               

               
Cow position:
               
chr5:46668569-46668945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
241, 8
               

               
Conread position:
               
690-1057
               

               
Cow position:
               
chr5:48532659-48533019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 8
               

               
Conread position:
               
694-1059
               

               
Cow position:
               
chr5:40788694-40789074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 238
               

               
Conread position:
               
698-1060
               

               
Cow position:
               
chr5:13046089-13046461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 70
               

               
Conread position:
               
721-1063
               

               
Cow position:
               
chr5:34297603-34297950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
25, 5
               

               
Conread position:
               
735-1058
               

               
Cow position:
               
chr5:9419396-9419069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 125
               

               
Conread position:
               
735-1060
               

               
Cow position:
               
chr5:41465748-41466081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
216, 170
               

               
Conread position:
               
745-919
               

               
Cow position:
               
chr5:26346307-26346481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
164, 32
               

               
Conread position:
               
745-1060
               

               
Cow position:
               
chr5:31100739-31100416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 139
               

               
Conread position:
               
756-1058
               

               
Cow position:
               
chr5:10856120-10855813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 250
               

               
Conread position:
               
761-1060
               

               
Cow position:
               
chr5:18885825-18885528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
222, 62
               

               
Conread position:
               
766-1021
               

               
Cow position:
               
chr5:14344712-14344469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
185, 97
               

               
Conread position:
               
812-1057
               

               
Cow position:
               
chr5:24999234-24998987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 107
               

               
Conread position:
               
812-1064
               

               
Cow position:
               
chr5:39016788-39017046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
814-1060
               

               
Cow position:
               
chr5:51309101-51308857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
139, 77
               

               
Conread position:
               
829-1060
               

               
Cow position:
               
chr5:27654584-27654817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
122, 136
               

               
Conread position:
               
836-1060
               

               
Cow position:
               
chr5:7274626-7274850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
21, 115
               

               
Conread position:
               
842-1060
               

               
Cow position:
               
chr5:12731929-12731704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
68, 189
               

               
Conread position:
               
847-1059
               

               
Cow position:
               
chr5:23687104-23686888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
80, 25
               

               
Conread position:
               
857-1060
               

               
Cow position:
               
chr5:24151582-24151785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
94, 27
               

               
Conread position:
               
877-1021
               

               
Cow position:
               
chr5:48855032-48855179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
39, 142
               

               
Conread position:
               
897-1043
               

               
Cow position:
               
chr5:32282130-32281976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
897-1060
               

               
Cow position:
               
chr5:59061473-59061642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
54, 133
               
Show alignments to all cow chromosomes.