Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01G090098.5 |
| Conread position: | 322-638 |
| Cow position: | chr1:22442337-22442655 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 57, 93 |
| Conread position: | 337-560 |
| Cow position: | chr1:70106551-70106337 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 88, 16 |
| Conread position: | 337-566 |
| Cow position: | chr1:66401804-66401583 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 91, 16 |
| Conread position: | 337-599 |
| Cow position: | chr1:62197272-62197532 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 16 |
| Conread position: | 337-599 |
| Cow position: | chr1:72734327-72734076 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 254, 16 |
| Conread position: | 337-601 |
| Cow position: | chr1:30087186-30087447 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 189 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 11, 79 |
| Conread position: | 337-601 |
| Cow position: | chr1:58049948-58050191 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 148, 16 |
| Conread position: | 337-611 |
| Cow position: | chr1:13798033-13797767 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 191 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 119, 23 |
| Conread position: | 337-615 |
| Cow position: | chr1:28470041-28469772 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 16 |
| Conread position: | 337-666 |
| Cow position: | chr1:46241433-46241756 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 24, 17 |
| Conread position: | 337-671 |
| Cow position: | chr1:76660239-76660574 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 116, 20 |
| Conread position: | 337-718 |
| Cow position: | chr1:22606855-22607231 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 12 |
| Conread position: | 337-733 |
| Cow position: | chr1:75267017-75266608 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 18 |
| Conread position: | 337-742 |
| Cow position: | chr1:69239833-69240235 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 16 |
| Conread position: | 338-601 |
| Cow position: | chr1:31342541-31342801 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 7, 17 |
| Conread position: | 338-680 |
| Cow position: | chr1:11056089-11056417 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 244 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 141, 12 |
| Conread position: | 338-720 |
| Cow position: | chr1:1777950-1778326 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 19 |
| Conread position: | 339-641 |
| Cow position: | chr1:10768797-10768483 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 226 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 101, 16 |
| Conread position: | 340-711 |
| Cow position: | chr1:22419186-22418829 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 16 |
| Conread position: | 343-574 |
| Cow position: | chr1:81225371-81225594 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 135, 12 |
| Conread position: | 343-666 |
| Cow position: | chr1:16984385-16984073 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 36, 10 |
| Conread position: | 343-666 |
| Cow position: | chr1:47636371-47636055 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 36, 10 |
| Conread position: | 343-666 |
| Cow position: | chr1:91840683-91840996 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 61, 17 |
| Conread position: | 343-672 |
| Cow position: | chr1:93571444-93571762 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 110, 12 |
| Conread position: | 346-716 |
| Cow position: | chr1:82419428-82419787 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 299, 85 |
| Conread position: | 350-640 |
| Cow position: | chr1:25222742-25223016 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 30, 73 |
| Conread position: | 352-625 |
| Cow position: | chr1:89093866-89093598 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 27, 73 |
| Conread position: | 352-644 |
| Cow position: | chr1:60452235-60452522 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 208 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 15, 23 |
| Conread position: | 352-666 |
| Cow position: | chr1:93579720-93580022 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 28, 73 |
| Conread position: | 352-669 |
| Cow position: | chr1:67905333-67905639 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 228 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 127, 71 |
| Conread position: | 352-710 |
| Cow position: | chr1:7435128-7434763 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 252 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 98, 71 |
| Conread position: | 352-711 |
| Cow position: | chr1:93441158-93440798 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 82 |
| Conread position: | 353-591 |
| Cow position: | chr1:90862361-90862128 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 26, 72 |
| Conread position: | 353-637 |
| Cow position: | chr1:4269567-4269289 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 202 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 26, 67 |
| Conread position: | 353-644 |
| Cow position: | chr1:2530039-2529756 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 26, 72 |
| Conread position: | 353-666 |
| Cow position: | chr1:8319346-8319047 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 29, 50 |
| Conread position: | 353-676 |
| Cow position: | chr1:93429966-93429649 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 26, 82 |
| Conread position: | 353-678 |
| Cow position: | chr1:17467364-17467682 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 29, 69 |
| Conread position: | 353-684 |
| Cow position: | chr1:81468917-81469237 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 70 |
| Conread position: | 353-697 |
| Cow position: | chr1:82420262-82420600 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 242 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 49, 81 |
| Conread position: | 355-567 |
| Cow position: | chr1:80303534-80303741 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 124, 75 |
| Conread position: | 355-592 |
| Cow position: | chr1:90072852-90073079 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 355-643 |
| Cow position: | chr1:17440187-17440465 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 197 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 30, 37 |
| Conread position: | 355-669 |
| Cow position: | chr1:91995279-91994977 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 98, 68 |
| Conread position: | 355-711 |
| Cow position: | chr1:22607512-22607872 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 200 |
| Conread position: | 356-668 |
| Cow position: | chr1:91977063-91977371 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 49, 22 |
| Conread position: | 357-705 |
| Cow position: | chr1:96142670-96142331 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 8, 109 |
| Conread position: | 362-668 |
| Cow position: | chr1:9147802-9147501 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 218 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 91, 67 |
| Conread position: | 365-565 |
| Cow position: | chr1:64729180-64729375 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 88, 65 |
| Conread position: | 365-611 |
| Cow position: | chr1:83789852-83790095 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 8, 60 |
| Conread position: | 365-718 |
| Cow position: | chr1:82422696-82423041 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 46 |
| Conread position: | 368-689 |
| Cow position: | chr1:78728817-78728500 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 217 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 85, 62 |
| Conread position: | 371-597 |
| Cow position: | chr1:89399189-89398971 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 8, 54 |
| Conread position: | 391-629 |
| Cow position: | chr1:69346298-69346061 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 104, 20 |
| Conread position: | 432-619 |
| Cow position: | chr1:102310910-102310724 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 57, 20 |
| Conread position: | 435-644 |
| Cow position: | chr1:9153394-9153184 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 18, 191 |
| Conread position: | 436-612 |
| Cow position: | chr1:22590700-22590873 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 436-623 |
| Cow position: | chr1:22605522-22605707 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 17, 68 |
| Conread position: | 437-586 |
| Cow position: | chr1:93427999-93428147 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 446-590 |
| Cow position: | chr1:70099360-70099221 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 446-604 |
| Cow position: | chr1:78060236-78060396 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 452-601 |
| Cow position: | chr1:89355448-89355594 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 26, 10 |
| Conread position: | 452-608 |
| Cow position: | chr1:5376801-5376644 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 452-633 |
| Cow position: | chr1:101657104-101657280 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 27, 86 |
| Conread position: | 452-666 |
| Cow position: | chr1:70256756-70256543 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 27, 173 |
| Conread position: | 455-666 |
| Cow position: | chr1:57892899-57893104 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 455-718 |
| Cow position: | chr1:42184906-42184646 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 190 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 459-704 |
| Cow position: | chr1:39066945-39067183 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 20, 88 |
| Conread position: | 474-666 |
| Cow position: | chr1:100077579-100077390 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 185, 22 |
| Conread position: | 477-651 |
| Cow position: | chr1:46283457-46283630 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 129, 46 |
| Conread position: | 477-750 |
| Cow position: | chr1:24229907-24229631 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 129, 147 |
| Conread position: | 482-592 |
| Cow position: | chr1:23713925-23714037 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 90 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 482-627 |
| Cow position: | chr1:66990062-66990204 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 482-632 |
| Cow position: | chr1:96313223-96313074 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 118 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 482-675 |
| Cow position: | chr1:6971807-6972000 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 164, 69 |
| Conread position: | 482-683 |
| Cow position: | chr1:22659876-22659675 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 8, 87 |
| Conread position: | 483-673 |
| Cow position: | chr1:60785967-60786158 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 8, 83 |
| Conread position: | 487-720 |
| Cow position: | chr1:30068918-30068688 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 154, 186 |
| Conread position: | 488-623 |
| Cow position: | chr1:44128877-44129012 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 512-665 |
| Cow position: | chr1:69382353-69382507 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 97, 115 |
Show alignments to all cow chromosomes.