Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01G090098.5 |
| Conread position: | 327-705 |
| Cow position: | chr10:36206234-36206634 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 275 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 42, 94 |
| Conread position: | 337-592 |
| Cow position: | chr10:57076940-57077194 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 86, 16 |
| Conread position: | 337-623 |
| Cow position: | chr10:55117965-55117678 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 19 |
| Conread position: | 337-629 |
| Cow position: | chr10:52670662-52670952 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 127, 12 |
| Conread position: | 337-644 |
| Cow position: | chr10:30615747-30615437 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 16 |
| Conread position: | 337-668 |
| Cow position: | chr10:50565806-50565482 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 13 |
| Conread position: | 337-706 |
| Cow position: | chr10:34730457-34730092 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 337-721 |
| Cow position: | chr10:30820226-30820589 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 338-591 |
| Cow position: | chr10:25502976-25503221 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 86, 15 |
| Conread position: | 338-645 |
| Cow position: | chr10:9109108-9108810 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 221 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 141, 17 |
| Conread position: | 338-718 |
| Cow position: | chr10:55143314-55142945 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 15 |
| Conread position: | 340-596 |
| Cow position: | chr10:55059476-55059224 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 107, 8 |
| Conread position: | 343-613 |
| Cow position: | chr10:65206049-65205789 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 36, 10 |
| Conread position: | 343-663 |
| Cow position: | chr10:41266026-41265714 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 110, 10 |
| Conread position: | 343-666 |
| Cow position: | chr10:16699169-16698856 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 24, 10 |
| Conread position: | 347-680 |
| Cow position: | chr10:14894586-14894269 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 236 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 297, 99 |
| Conread position: | 352-624 |
| Cow position: | chr10:50463360-50463616 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 101, 14 |
| Conread position: | 352-718 |
| Cow position: | chr10:21341372-21341009 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 83 |
| Conread position: | 353-548 |
| Cow position: | chr10:15168433-15168237 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 46, 66 |
| Conread position: | 353-623 |
| Cow position: | chr10:16900078-16899814 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 195 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 103, 15 |
| Conread position: | 353-637 |
| Cow position: | chr10:60963150-60963425 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 8, 79 |
| Conread position: | 353-644 |
| Cow position: | chr10:3873709-3873426 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 126, 57 |
| Conread position: | 353-655 |
| Cow position: | chr10:3826156-3825855 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 26, 72 |
| Conread position: | 353-655 |
| Cow position: | chr10:48450417-48450704 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 222 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 251, 11 |
| Conread position: | 353-659 |
| Cow position: | chr10:23075191-23074895 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 33 |
| Conread position: | 353-664 |
| Cow position: | chr10:41273967-41273656 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 220 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 26, 75 |
| Conread position: | 353-666 |
| Cow position: | chr10:23451552-23451861 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 216 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 26, 72 |
| Conread position: | 353-675 |
| Cow position: | chr10:64156320-64156650 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 47, 71 |
| Conread position: | 353-744 |
| Cow position: | chr10:41118555-41118169 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 272 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 100, 70 |
| Conread position: | 355-622 |
| Cow position: | chr10:26288953-26289216 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 27, 75 |
| Conread position: | 355-644 |
| Cow position: | chr10:41269710-41269428 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 198 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 24, 70 |
| Conread position: | 355-678 |
| Cow position: | chr10:9372649-9372330 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 229 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 51, 76 |
| Conread position: | 356-666 |
| Cow position: | chr10:21010584-21010872 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 219 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 33, 70 |
| Conread position: | 356-754 |
| Cow position: | chr10:59524715-59524307 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 175 |
| Conread position: | 357-525 |
| Cow position: | chr10:50564615-50564454 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 96, 23 |
| Conread position: | 357-576 |
| Cow position: | chr10:39612290-39612066 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 31, 10 |
| Conread position: | 368-552 |
| Cow position: | chr10:14610932-14610753 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 88, 55 |
| Conread position: | 371-626 |
| Cow position: | chr10:55103388-55103138 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 63 |
| Conread position: | 401-672 |
| Cow position: | chr10:9883185-9882937 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 238, 32 |
| Conread position: | 434-587 |
| Cow position: | chr10:31722-31878 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 436-603 |
| Cow position: | chr10:38835341-38835174 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 439-665 |
| Cow position: | chr10:14606233-14606462 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 44, 172 |
| Conread position: | 452-666 |
| Cow position: | chr10:50728525-50728738 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 37, 139 |
| Conread position: | 452-666 |
| Cow position: | chr10:56916579-56916365 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 169, 22 |
| Conread position: | 452-695 |
| Cow position: | chr10:55116464-55116226 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 38, 65 |
| Conread position: | 455-747 |
| Cow position: | chr10:14615337-14615611 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 474-675 |
| Cow position: | chr10:36297637-36297843 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 12, 150 |
| Conread position: | 482-608 |
| Cow position: | chr10:29707008-29706880 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 485-631 |
| Cow position: | chr10:36790398-36790545 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 14, 141 |
| Conread position: | 487-718 |
| Cow position: | chr10:53822295-53822515 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 490-718 |
| Cow position: | chr10:38366954-38367176 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 143, 90 |
| Conread position: | 491-604 |
| Cow position: | chr10:42731319-42731205 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 502-611 |
| Cow position: | chr10:49356088-49355979 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 88 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.