Cow genome map
Conread name: | Ss1.1-Tra1-TCH01G090098.5 |
Conread position: | 320-711 |
Cow position: | chr11:65752889-65753281 (view UCSC Genome Browser custom track) |
Alignm length: | 403 |
Alignm identity: | 275 |
Alignm E-value: | 9.80909e-45 |
Alignm gaps (pig, cow): | 87, 33 |
Conread position: | 332-597 |
Cow position: | chr11:12167783-12167521 (view UCSC Genome Browser custom track) |
Alignm length: | 272 |
Alignm identity: | 181 |
Alignm E-value: | 7e-21 |
Alignm gaps (pig, cow): | 95, 21 |
Conread position: | 336-636 |
Cow position: | chr11:55183368-55183668 (view UCSC Genome Browser custom track) |
Alignm length: | 307 |
Alignm identity: | 226 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 133, 19 |
Conread position: | 337-563 |
Cow position: | chr11:81347642-81347858 (view UCSC Genome Browser custom track) |
Alignm length: | 227 |
Alignm identity: | 154 |
Alignm E-value: | 2e-21 |
Alignm gaps (pig, cow): | 15, 0 |
Conread position: | 337-599 |
Cow position: | chr11:8369118-8368858 (view UCSC Genome Browser custom track) |
Alignm length: | 272 |
Alignm identity: | 198 |
Alignm E-value: | 4e-36 |
Alignm gaps (pig, cow): | 84, 16 |
Conread position: | 337-635 |
Cow position: | chr11:85701968-85701675 (view UCSC Genome Browser custom track) |
Alignm length: | 305 |
Alignm identity: | 201 |
Alignm E-value: | 1e-23 |
Alignm gaps (pig, cow): | 57, 17 |
Conread position: | 337-637 |
Cow position: | chr11:75129505-75129795 (view UCSC Genome Browser custom track) |
Alignm length: | 302 |
Alignm identity: | 206 |
Alignm E-value: | 1e-33 |
Alignm gaps (pig, cow): | 142, 18 |
Conread position: | 337-644 |
Cow position: | chr11:61469700-61469399 (view UCSC Genome Browser custom track) |
Alignm length: | 314 |
Alignm identity: | 215 |
Alignm E-value: | 3e-32 |
Alignm gaps (pig, cow): | 45, 20 |
Conread position: | 337-654 |
Cow position: | chr11:47885178-47884877 (view UCSC Genome Browser custom track) |
Alignm length: | 320 |
Alignm identity: | 223 |
Alignm E-value: | 1e-34 |
Alignm gaps (pig, cow): | 64, 16 |
Conread position: | 337-670 |
Cow position: | chr11:14191267-14191595 (view UCSC Genome Browser custom track) |
Alignm length: | 340 |
Alignm identity: | 245 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 122, 17 |
Conread position: | 337-675 |
Cow position: | chr11:50040796-50040465 (view UCSC Genome Browser custom track) |
Alignm length: | 343 |
Alignm identity: | 248 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 119, 19 |
Conread position: | 337-718 |
Cow position: | chr11:12336190-12336571 (view UCSC Genome Browser custom track) |
Alignm length: | 385 |
Alignm identity: | 281 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 113, 18 |
Conread position: | 338-580 |
Cow position: | chr11:52785617-52785848 (view UCSC Genome Browser custom track) |
Alignm length: | 246 |
Alignm identity: | 181 |
Alignm E-value: | 1e-33 |
Alignm gaps (pig, cow): | 31, 15 |
Conread position: | 343-566 |
Cow position: | chr11:31348626-31348409 (view UCSC Genome Browser custom track) |
Alignm length: | 229 |
Alignm identity: | 163 |
Alignm E-value: | 1e-24 |
Alignm gaps (pig, cow): | 36, 10 |
Conread position: | 343-675 |
Cow position: | chr11:72344873-72345195 (view UCSC Genome Browser custom track) |
Alignm length: | 338 |
Alignm identity: | 235 |
Alignm E-value: | 1e-37 |
Alignm gaps (pig, cow): | 36, 10 |
Conread position: | 343-678 |
Cow position: | chr11:71161587-71161915 (view UCSC Genome Browser custom track) |
Alignm length: | 343 |
Alignm identity: | 238 |
Alignm E-value: | 4e-37 |
Alignm gaps (pig, cow): | 36, 13 |
Conread position: | 352-609 |
Cow position: | chr11:75202282-75202530 (view UCSC Genome Browser custom track) |
Alignm length: | 261 |
Alignm identity: | 186 |
Alignm E-value: | 3e-32 |
Alignm gaps (pig, cow): | 27, 73 |
Conread position: | 352-710 |
Cow position: | chr11:36397454-36397115 (view UCSC Genome Browser custom track) |
Alignm length: | 361 |
Alignm identity: | 260 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 104, 74 |
Conread position: | 353-591 |
Cow position: | chr11:2069069-2068842 (view UCSC Genome Browser custom track) |
Alignm length: | 241 |
Alignm identity: | 166 |
Alignm E-value: | 3e-22 |
Alignm gaps (pig, cow): | 26, 72 |
Conread position: | 353-600 |
Cow position: | chr11:68236822-68237065 (view UCSC Genome Browser custom track) |
Alignm length: | 252 |
Alignm identity: | 172 |
Alignm E-value: | 4e-25 |
Alignm gaps (pig, cow): | 26, 72 |
Conread position: | 353-606 |
Cow position: | chr11:37136847-37136604 (view UCSC Genome Browser custom track) |
Alignm length: | 256 |
Alignm identity: | 180 |
Alignm E-value: | 2e-30 |
Alignm gaps (pig, cow): | 50, 71 |
Conread position: | 353-612 |
Cow position: | chr11:63283428-63283183 (view UCSC Genome Browser custom track) |
Alignm length: | 261 |
Alignm identity: | 182 |
Alignm E-value: | 2e-28 |
Alignm gaps (pig, cow): | 126, 16 |
Conread position: | 353-625 |
Cow position: | chr11:63667285-63667023 (view UCSC Genome Browser custom track) |
Alignm length: | 274 |
Alignm identity: | 200 |
Alignm E-value: | 8.00141e-43 |
Alignm gaps (pig, cow): | 103, 77 |
Conread position: | 353-637 |
Cow position: | chr11:2894742-2895020 (view UCSC Genome Browser custom track) |
Alignm length: | 289 |
Alignm identity: | 201 |
Alignm E-value: | 1e-33 |
Alignm gaps (pig, cow): | 29, 72 |
Conread position: | 353-640 |
Cow position: | chr11:3744071-3743791 (view UCSC Genome Browser custom track) |
Alignm length: | 295 |
Alignm identity: | 198 |
Alignm E-value: | 3e-23 |
Alignm gaps (pig, cow): | 26, 73 |
Conread position: | 353-663 |
Cow position: | chr11:12320518-12320830 (view UCSC Genome Browser custom track) |
Alignm length: | 318 |
Alignm identity: | 231 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 100, 80 |
Conread position: | 353-664 |
Cow position: | chr11:83086787-83086490 (view UCSC Genome Browser custom track) |
Alignm length: | 316 |
Alignm identity: | 221 |
Alignm E-value: | 1e-35 |
Alignm gaps (pig, cow): | 26, 84 |
Conread position: | 353-666 |
Cow position: | chr11:37724077-37724381 (view UCSC Genome Browser custom track) |
Alignm length: | 319 |
Alignm identity: | 230 |
Alignm E-value: | 6.99949e-42 |
Alignm gaps (pig, cow): | 26, 42 |
Conread position: | 353-704 |
Cow position: | chr11:33442621-33442284 (view UCSC Genome Browser custom track) |
Alignm length: | 354 |
Alignm identity: | 251 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 94, 17 |
Conread position: | 355-526 |
Cow position: | chr11:7065918-7066086 (view UCSC Genome Browser custom track) |
Alignm length: | 172 |
Alignm identity: | 129 |
Alignm E-value: | 2e-29 |
Alignm gaps (pig, cow): | 76, 0 |
Conread position: | 355-717 |
Cow position: | chr11:48059073-48059407 (view UCSC Genome Browser custom track) |
Alignm length: | 365 |
Alignm identity: | 254 |
Alignm E-value: | 5e-38 |
Alignm gaps (pig, cow): | 98, 41 |
Conread position: | 357-637 |
Cow position: | chr11:83551832-83551549 (view UCSC Genome Browser custom track) |
Alignm length: | 288 |
Alignm identity: | 207 |
Alignm E-value: | 7.00005e-41 |
Alignm gaps (pig, cow): | 16, 25 |
Conread position: | 361-718 |
Cow position: | chr11:32770702-32770356 (view UCSC Genome Browser custom track) |
Alignm length: | 359 |
Alignm identity: | 248 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 276, 62 |
Conread position: | 365-608 |
Cow position: | chr11:14678263-14678027 (view UCSC Genome Browser custom track) |
Alignm length: | 249 |
Alignm identity: | 175 |
Alignm E-value: | 1e-24 |
Alignm gaps (pig, cow): | 8, 29 |
Conread position: | 365-667 |
Cow position: | chr11:79710082-79709771 (view UCSC Genome Browser custom track) |
Alignm length: | 314 |
Alignm identity: | 205 |
Alignm E-value: | 1e-25 |
Alignm gaps (pig, cow): | 92, 181 |
Conread position: | 368-680 |
Cow position: | chr11:3612659-3612364 (view UCSC Genome Browser custom track) |
Alignm length: | 317 |
Alignm identity: | 217 |
Alignm E-value: | 5e-28 |
Alignm gaps (pig, cow): | 11, 56 |
Conread position: | 371-752 |
Cow position: | chr11:11396790-11396419 (view UCSC Genome Browser custom track) |
Alignm length: | 383 |
Alignm identity: | 282 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 11, 62 |
Conread position: | 387-749 |
Cow position: | chr11:65479468-65479819 (view UCSC Genome Browser custom track) |
Alignm length: | 364 |
Alignm identity: | 251 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 40, 48 |
Conread position: | 397-608 |
Cow position: | chr11:18139087-18139293 (view UCSC Genome Browser custom track) |
Alignm length: | 214 |
Alignm identity: | 151 |
Alignm E-value: | 1e-26 |
Alignm gaps (pig, cow): | 61, 33 |
Conread position: | 398-719 |
Cow position: | chr11:41225991-41226314 (view UCSC Genome Browser custom track) |
Alignm length: | 325 |
Alignm identity: | 238 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 53, 9 |
Conread position: | 400-684 |
Cow position: | chr11:64035337-64035059 (view UCSC Genome Browser custom track) |
Alignm length: | 289 |
Alignm identity: | 200 |
Alignm E-value: | 9e-33 |
Alignm gaps (pig, cow): | 53, 23 |
Conread position: | 434-666 |
Cow position: | chr11:45821126-45820890 (view UCSC Genome Browser custom track) |
Alignm length: | 240 |
Alignm identity: | 165 |
Alignm E-value: | 4e-25 |
Alignm gaps (pig, cow): | 19, 196 |
Conread position: | 435-665 |
Cow position: | chr11:48074273-48074040 (view UCSC Genome Browser custom track) |
Alignm length: | 235 |
Alignm identity: | 166 |
Alignm E-value: | 3e-32 |
Alignm gaps (pig, cow): | 44, 194 |
Conread position: | 436-675 |
Cow position: | chr11:8557400-8557160 (view UCSC Genome Browser custom track) |
Alignm length: | 246 |
Alignm identity: | 170 |
Alignm E-value: | 4e-26 |
Alignm gaps (pig, cow): | 17, 171 |
Conread position: | 436-678 |
Cow position: | chr11:37318580-37318336 (view UCSC Genome Browser custom track) |
Alignm length: | 247 |
Alignm identity: | 176 |
Alignm E-value: | 1e-34 |
Alignm gaps (pig, cow): | 17, 142 |
Conread position: | 452-608 |
Cow position: | chr11:63238376-63238222 (view UCSC Genome Browser custom track) |
Alignm length: | 158 |
Alignm identity: | 117 |
Alignm E-value: | 3e-23 |
Alignm gaps (pig, cow): | 26, 10 |
Conread position: | 452-612 |
Cow position: | chr11:45492585-45492421 (view UCSC Genome Browser custom track) |
Alignm length: | 165 |
Alignm identity: | 121 |
Alignm E-value: | 3e-24 |
Alignm gaps (pig, cow): | 26, 0 |
Conread position: | 452-682 |
Cow position: | chr11:30474139-30473907 (view UCSC Genome Browser custom track) |
Alignm length: | 234 |
Alignm identity: | 160 |
Alignm E-value: | 2e-27 |
Alignm gaps (pig, cow): | 37, 174 |
Conread position: | 452-699 |
Cow position: | chr11:59969728-59969480 (view UCSC Genome Browser custom track) |
Alignm length: | 252 |
Alignm identity: | 175 |
Alignm E-value: | 7e-31 |
Alignm gaps (pig, cow): | 26, 175 |
Conread position: | 453-675 |
Cow position: | chr11:32075768-32075545 (view UCSC Genome Browser custom track) |
Alignm length: | 225 |
Alignm identity: | 162 |
Alignm E-value: | 1e-34 |
Alignm gaps (pig, cow): | 36, 172 |
Conread position: | 459-711 |
Cow position: | chr11:37328366-37328119 (view UCSC Genome Browser custom track) |
Alignm length: | 254 |
Alignm identity: | 188 |
Alignm E-value: | 1.99965e-42 |
Alignm gaps (pig, cow): | 181, 13 |
Conread position: | 477-611 |
Cow position: | chr11:30220434-30220300 (view UCSC Genome Browser custom track) |
Alignm length: | 135 |
Alignm identity: | 108 |
Alignm E-value: | 6e-29 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 477-671 |
Cow position: | chr11:6752958-6752767 (view UCSC Genome Browser custom track) |
Alignm length: | 195 |
Alignm identity: | 141 |
Alignm E-value: | 2e-29 |
Alignm gaps (pig, cow): | 143, 0 |
Conread position: | 482-633 |
Cow position: | chr11:25355839-25355989 (view UCSC Genome Browser custom track) |
Alignm length: | 153 |
Alignm identity: | 120 |
Alignm E-value: | 6e-29 |
Alignm gaps (pig, cow): | 131, 138 |
Conread position: | 482-637 |
Cow position: | chr11:59989310-59989464 (view UCSC Genome Browser custom track) |
Alignm length: | 156 |
Alignm identity: | 120 |
Alignm E-value: | 2e-29 |
Alignm gaps (pig, cow): | 142, 0 |
Conread position: | 482-675 |
Cow position: | chr11:81837791-81837598 (view UCSC Genome Browser custom track) |
Alignm length: | 196 |
Alignm identity: | 139 |
Alignm E-value: | 1e-25 |
Alignm gaps (pig, cow): | 10, 20 |
Conread position: | 483-664 |
Cow position: | chr11:58354911-58354735 (view UCSC Genome Browser custom track) |
Alignm length: | 184 |
Alignm identity: | 136 |
Alignm E-value: | 4e-25 |
Alignm gaps (pig, cow): | 8, 58 |
Conread position: | 483-666 |
Cow position: | chr11:40512153-40512337 (view UCSC Genome Browser custom track) |
Alignm length: | 188 |
Alignm identity: | 141 |
Alignm E-value: | 6e-29 |
Alignm gaps (pig, cow): | 6, 105 |
Conread position: | 483-687 |
Cow position: | chr11:18179939-18180145 (view UCSC Genome Browser custom track) |
Alignm length: | 208 |
Alignm identity: | 149 |
Alignm E-value: | 2e-29 |
Alignm gaps (pig, cow): | 6, 142 |
Conread position: | 484-671 |
Cow position: | chr11:70694285-70694095 (view UCSC Genome Browser custom track) |
Alignm length: | 194 |
Alignm identity: | 138 |
Alignm E-value: | 9e-23 |
Alignm gaps (pig, cow): | 51, 6 |
Conread position: | 486-596 |
Cow position: | chr11:48888859-48888970 (view UCSC Genome Browser custom track) |
Alignm length: | 112 |
Alignm identity: | 91 |
Alignm E-value: | 9e-23 |
Alignm gaps (pig, cow): | 107, 0 |
Conread position: | 489-754 |
Cow position: | chr11:15636084-15636343 (view UCSC Genome Browser custom track) |
Alignm length: | 266 |
Alignm identity: | 186 |
Alignm E-value: | 1e-36 |
Alignm gaps (pig, cow): | 66, 0 |
Conread position: | 491-675 |
Cow position: | chr11:35616812-35616993 (view UCSC Genome Browser custom track) |
Alignm length: | 187 |
Alignm identity: | 136 |
Alignm E-value: | 1e-24 |
Alignm gaps (pig, cow): | 108, 134 |
Conread position: | 500-640 |
Cow position: | chr11:33189952-33190091 (view UCSC Genome Browser custom track) |
Alignm length: | 142 |
Alignm identity: | 106 |
Alignm E-value: | 7e-21 |
Alignm gaps (pig, cow): | 106, 113 |
Conread position: | 501-678 |
Cow position: | chr11:6887067-6887245 (view UCSC Genome Browser custom track) |
Alignm length: | 182 |
Alignm identity: | 133 |
Alignm E-value: | 4e-25 |
Alignm gaps (pig, cow): | 137, 123 |
Conread position: | 501-718 |
Cow position: | chr11:31815463-31815251 (view UCSC Genome Browser custom track) |
Alignm length: | 218 |
Alignm identity: | 157 |
Alignm E-value: | 8e-32 |
Alignm gaps (pig, cow): | 124, 0 |
Conread position: | 502-645 |
Cow position: | chr11:40582539-40582680 (view UCSC Genome Browser custom track) |
Alignm length: | 145 |
Alignm identity: | 114 |
Alignm E-value: | 1e-26 |
Alignm gaps (pig, cow): | 104, 116 |
Conread position: | 508-710 |
Cow position: | chr11:68169405-68169601 (view UCSC Genome Browser custom track) |
Alignm length: | 203 |
Alignm identity: | 144 |
Alignm E-value: | 1e-25 |
Alignm gaps (pig, cow): | 97, 0 |
Conread position: | 508-711 |
Cow position: | chr11:433279-433082 (view UCSC Genome Browser custom track) |
Alignm length: | 205 |
Alignm identity: | 153 |
Alignm E-value: | 2e-31 |
Alignm gaps (pig, cow): | 98, 65 |
Conread position: | 517-719 |
Cow position: | chr11:7066364-7066567 (view UCSC Genome Browser custom track) |
Alignm length: | 205 |
Alignm identity: | 145 |
Alignm E-value: | 5e-28 |
Alignm gaps (pig, cow): | 120, 198 |
Show alignments to all cow chromosomes.