Cow genome map

Conread name: Ss1.1-Tra1-TCH01G090098.5

Conread position: 320-711
Cow position: chr11:65752889-65753281 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 275
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 87, 33

Conread position: 332-597
Cow position: chr11:12167783-12167521 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 181
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 95, 21

Conread position: 336-636
Cow position: chr11:55183368-55183668 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 19

Conread position: 337-563
Cow position: chr11:81347642-81347858 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 154
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 15, 0

Conread position: 337-599
Cow position: chr11:8369118-8368858 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 198
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 84, 16

Conread position: 337-635
Cow position: chr11:85701968-85701675 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 201
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 57, 17

Conread position: 337-637
Cow position: chr11:75129505-75129795 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 206
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 142, 18

Conread position: 337-644
Cow position: chr11:61469700-61469399 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 215
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 45, 20

Conread position: 337-654
Cow position: chr11:47885178-47884877 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 223
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 64, 16

Conread position: 337-670
Cow position: chr11:14191267-14191595 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 17

Conread position: 337-675
Cow position: chr11:50040796-50040465 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 19

Conread position: 337-718
Cow position: chr11:12336190-12336571 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 18

Conread position: 338-580
Cow position: chr11:52785617-52785848 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 181
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 31, 15

Conread position: 343-566
Cow position: chr11:31348626-31348409 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 163
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 36, 10

Conread position: 343-675
Cow position: chr11:72344873-72345195 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 235
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 36, 10

Conread position: 343-678
Cow position: chr11:71161587-71161915 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 238
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 36, 13

Conread position: 352-609
Cow position: chr11:75202282-75202530 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 186
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 27, 73

Conread position: 352-710
Cow position: chr11:36397454-36397115 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 74

Conread position: 353-591
Cow position: chr11:2069069-2068842 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 166
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 26, 72

Conread position: 353-600
Cow position: chr11:68236822-68237065 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 172
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 26, 72

Conread position: 353-606
Cow position: chr11:37136847-37136604 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 180
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 50, 71

Conread position: 353-612
Cow position: chr11:63283428-63283183 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 182
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 126, 16

Conread position: 353-625
Cow position: chr11:63667285-63667023 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 200
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 103, 77

Conread position: 353-637
Cow position: chr11:2894742-2895020 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 201
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 29, 72

Conread position: 353-640
Cow position: chr11:3744071-3743791 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 198
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 26, 73

Conread position: 353-663
Cow position: chr11:12320518-12320830 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 80

Conread position: 353-664
Cow position: chr11:83086787-83086490 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 221
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 26, 84

Conread position: 353-666
Cow position: chr11:37724077-37724381 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 230
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 26, 42

Conread position: 353-704
Cow position: chr11:33442621-33442284 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 17

Conread position: 355-526
Cow position: chr11:7065918-7066086 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 129
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 76, 0

Conread position: 355-717
Cow position: chr11:48059073-48059407 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 254
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 98, 41

Conread position: 357-637
Cow position: chr11:83551832-83551549 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 207
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 16, 25

Conread position: 361-718
Cow position: chr11:32770702-32770356 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 248
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 276, 62

Conread position: 365-608
Cow position: chr11:14678263-14678027 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 175
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 8, 29

Conread position: 365-667
Cow position: chr11:79710082-79709771 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 205
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 92, 181

Conread position: 368-680
Cow position: chr11:3612659-3612364 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 217
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 11, 56

Conread position: 371-752
Cow position: chr11:11396790-11396419 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 62

Conread position: 387-749
Cow position: chr11:65479468-65479819 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 48

Conread position: 397-608
Cow position: chr11:18139087-18139293 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 151
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 61, 33

Conread position: 398-719
Cow position: chr11:41225991-41226314 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 9

Conread position: 400-684
Cow position: chr11:64035337-64035059 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 200
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 53, 23

Conread position: 434-666
Cow position: chr11:45821126-45820890 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 165
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 19, 196

Conread position: 435-665
Cow position: chr11:48074273-48074040 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 166
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 44, 194

Conread position: 436-675
Cow position: chr11:8557400-8557160 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 170
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 17, 171

Conread position: 436-678
Cow position: chr11:37318580-37318336 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 176
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 17, 142

Conread position: 452-608
Cow position: chr11:63238376-63238222 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 117
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 26, 10

Conread position: 452-612
Cow position: chr11:45492585-45492421 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 121
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 26, 0

Conread position: 452-682
Cow position: chr11:30474139-30473907 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 160
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 37, 174

Conread position: 452-699
Cow position: chr11:59969728-59969480 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 175
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 26, 175

Conread position: 453-675
Cow position: chr11:32075768-32075545 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 162
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 36, 172

Conread position: 459-711
Cow position: chr11:37328366-37328119 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 188
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 181, 13

Conread position: 477-611
Cow position: chr11:30220434-30220300 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 108
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 477-671
Cow position: chr11:6752958-6752767 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 141
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 143, 0

Conread position: 482-633
Cow position: chr11:25355839-25355989 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 120
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 131, 138

Conread position: 482-637
Cow position: chr11:59989310-59989464 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 120
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 142, 0

Conread position: 482-675
Cow position: chr11:81837791-81837598 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 139
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 10, 20

Conread position: 483-664
Cow position: chr11:58354911-58354735 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 136
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 8, 58

Conread position: 483-666
Cow position: chr11:40512153-40512337 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 141
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 6, 105

Conread position: 483-687
Cow position: chr11:18179939-18180145 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 149
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 6, 142

Conread position: 484-671
Cow position: chr11:70694285-70694095 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 138
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 51, 6

Conread position: 486-596
Cow position: chr11:48888859-48888970 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 91
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 107, 0

Conread position: 489-754
Cow position: chr11:15636084-15636343 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 186
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 66, 0

Conread position: 491-675
Cow position: chr11:35616812-35616993 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 136
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 108, 134

Conread position: 500-640
Cow position: chr11:33189952-33190091 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 106
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 106, 113

Conread position: 501-678
Cow position: chr11:6887067-6887245 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 133
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 137, 123

Conread position: 501-718
Cow position: chr11:31815463-31815251 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 157
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 124, 0

Conread position: 502-645
Cow position: chr11:40582539-40582680 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 114
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 104, 116

Conread position: 508-710
Cow position: chr11:68169405-68169601 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 144
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 97, 0

Conread position: 508-711
Cow position: chr11:433279-433082 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 153
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 98, 65

Conread position: 517-719
Cow position: chr11:7066364-7066567 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 145
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 120, 198

Show alignments to all cow chromosomes.