Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01G090098.5 |
| Conread position: | 318-601 |
| Cow position: | chr12:4540499-4540218 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 35 |
| Conread position: | 333-597 |
| Cow position: | chr12:32339094-32339366 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 11, 38 |
| Conread position: | 337-528 |
| Cow position: | chr12:30979495-30979306 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 92, 16 |
| Conread position: | 337-586 |
| Cow position: | chr12:33040137-33040393 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 142, 16 |
| Conread position: | 337-601 |
| Cow position: | chr12:3079139-3078882 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 187 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 72, 16 |
| Conread position: | 337-661 |
| Cow position: | chr12:37465620-37465939 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 229 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 141, 18 |
| Conread position: | 337-666 |
| Cow position: | chr12:7443137-7442817 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 234 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 65, 18 |
| Conread position: | 337-667 |
| Cow position: | chr12:45811770-45811435 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 42, 17 |
| Conread position: | 341-670 |
| Cow position: | chr12:40080577-40080237 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 262, 17 |
| Conread position: | 343-684 |
| Cow position: | chr12:41189904-41190226 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 47, 12 |
| Conread position: | 352-689 |
| Cow position: | chr12:24334293-24333963 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 78 |
| Conread position: | 353-541 |
| Cow position: | chr12:11199307-11199116 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 80, 12 |
| Conread position: | 353-666 |
| Cow position: | chr12:42787526-42787222 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 26, 71 |
| Conread position: | 353-695 |
| Cow position: | chr12:10878498-10878826 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 226 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 26, 70 |
| Conread position: | 353-711 |
| Cow position: | chr12:1664602-1664969 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 54 |
| Conread position: | 353-711 |
| Cow position: | chr12:41468054-41468392 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 254 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 136, 53 |
| Conread position: | 355-599 |
| Cow position: | chr12:31016667-31016912 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 144, 81 |
| Conread position: | 356-678 |
| Cow position: | chr12:43992953-43992638 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 44, 68 |
| Conread position: | 360-704 |
| Cow position: | chr12:2005752-2006085 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 230 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 10, 65 |
| Conread position: | 361-588 |
| Cow position: | chr12:7923368-7923591 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 67, 40 |
| Conread position: | 362-672 |
| Cow position: | chr12:20840849-20841155 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 12, 47 |
| Conread position: | 366-613 |
| Cow position: | chr12:39123147-39122900 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 13, 5 |
| Conread position: | 368-637 |
| Cow position: | chr12:46034874-46035142 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 60, 28 |
| Conread position: | 374-761 |
| Cow position: | chr12:48384375-48384743 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 269 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 71, 111 |
| Conread position: | 435-671 |
| Cow position: | chr12:38589387-38589150 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 123 |
| Conread position: | 439-695 |
| Cow position: | chr12:16557271-16557015 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 48, 41 |
| Conread position: | 454-668 |
| Cow position: | chr12:47952023-47951807 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 83, 14 |
| Conread position: | 454-668 |
| Cow position: | chr12:47975890-47975674 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 83, 14 |
| Conread position: | 455-712 |
| Cow position: | chr12:13158629-13158878 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 482-739 |
| Cow position: | chr12:26549983-26549731 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 159, 58 |
| Conread position: | 484-679 |
| Cow position: | chr12:17334758-17334566 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 158, 129 |
Show alignments to all cow chromosomes.