Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01G090098.5 |
| Conread position: | 337-588 |
| Cow position: | chr13:8427379-8427624 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 142, 16 |
| Conread position: | 337-603 |
| Cow position: | chr13:26935298-26935030 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 184 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 42, 16 |
| Conread position: | 337-633 |
| Cow position: | chr13:722596-722875 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 116, 16 |
| Conread position: | 337-644 |
| Cow position: | chr13:36820582-36820286 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 221 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 42, 16 |
| Conread position: | 337-676 |
| Cow position: | chr13:42101586-42101922 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 41, 16 |
| Conread position: | 337-676 |
| Cow position: | chr13:42124581-42124250 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 232 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 43, 17 |
| Conread position: | 337-694 |
| Cow position: | chr13:6063498-6063163 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 116, 17 |
| Conread position: | 337-729 |
| Cow position: | chr13:15348192-15347807 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 263 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 118, 19 |
| Conread position: | 341-711 |
| Cow position: | chr13:60240267-60239911 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 243, 14 |
| Conread position: | 343-566 |
| Cow position: | chr13:33006676-33006460 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 146, 12 |
| Conread position: | 343-631 |
| Cow position: | chr13:22108538-22108271 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 347-663 |
| Cow position: | chr13:13557267-13556950 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 210 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 29, 172 |
| Conread position: | 350-639 |
| Cow position: | chr13:14574252-14574541 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 29, 55 |
| Conread position: | 350-675 |
| Cow position: | chr13:52849903-52849578 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 50, 11 |
| Conread position: | 350-716 |
| Cow position: | chr13:5610698-5610339 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 69 |
| Conread position: | 352-665 |
| Cow position: | chr13:47665411-47665726 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 46 |
| Conread position: | 352-667 |
| Cow position: | chr13:30335358-30335665 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 27, 71 |
| Conread position: | 352-730 |
| Cow position: | chr13:52852005-52852376 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 71 |
| Conread position: | 353-580 |
| Cow position: | chr13:22948240-22948014 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 26, 53 |
| Conread position: | 353-593 |
| Cow position: | chr13:13559370-13559601 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 26, 71 |
| Conread position: | 353-600 |
| Cow position: | chr13:13800322-13800080 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 26, 72 |
| Conread position: | 353-608 |
| Cow position: | chr13:26324634-26324877 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 26, 71 |
| Conread position: | 353-633 |
| Cow position: | chr13:54718819-54718547 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 205 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 26, 72 |
| Conread position: | 353-639 |
| Cow position: | chr13:41691116-41690843 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 26, 66 |
| Conread position: | 353-673 |
| Cow position: | chr13:26005374-26005062 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 231 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 8, 81 |
| Conread position: | 353-675 |
| Cow position: | chr13:14863476-14863790 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 26, 71 |
| Conread position: | 353-675 |
| Cow position: | chr13:17121259-17121579 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 26, 72 |
| Conread position: | 353-675 |
| Cow position: | chr13:18860135-18860460 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 234 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 26, 67 |
| Conread position: | 353-676 |
| Cow position: | chr13:17580671-17580994 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 236 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 50, 71 |
| Conread position: | 353-691 |
| Cow position: | chr13:15310709-15310378 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 27, 39 |
| Conread position: | 353-703 |
| Cow position: | chr13:22109421-22109086 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 11 |
| Conread position: | 353-703 |
| Cow position: | chr13:22170122-22169787 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 11 |
| Conread position: | 355-678 |
| Cow position: | chr13:54409464-54409140 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 228 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 46, 77 |
| Conread position: | 356-631 |
| Cow position: | chr13:22169254-22169003 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 194 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 236, 32 |
| Conread position: | 356-672 |
| Cow position: | chr13:52184366-52184045 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 226 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 91, 260 |
| Conread position: | 356-675 |
| Cow position: | chr13:34189685-34190000 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 23, 69 |
| Conread position: | 357-687 |
| Cow position: | chr13:49454529-49454206 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 234 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 22, 68 |
| Conread position: | 357-718 |
| Cow position: | chr13:49624884-49625239 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 12 |
| Conread position: | 361-675 |
| Cow position: | chr13:50787043-50787353 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 18, 64 |
| Conread position: | 369-668 |
| Cow position: | chr13:5244724-5245010 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 87, 54 |
| Conread position: | 403-671 |
| Cow position: | chr13:52328676-52328951 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 204 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 35, 96 |
| Conread position: | 433-666 |
| Cow position: | chr13:14726404-14726637 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 20, 65 |
| Conread position: | 435-665 |
| Cow position: | chr13:52693332-52693558 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 208, 44 |
| Conread position: | 436-617 |
| Cow position: | chr13:50117519-50117336 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 436-649 |
| Cow position: | chr13:5249402-5249624 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 22, 193 |
| Conread position: | 452-619 |
| Cow position: | chr13:14917581-14917749 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 452-645 |
| Cow position: | chr13:31483316-31483123 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 21, 33 |
| Conread position: | 452-653 |
| Cow position: | chr13:4802474-4802674 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 152, 15 |
| Conread position: | 454-675 |
| Cow position: | chr13:54346012-54346233 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 192, 156 |
| Conread position: | 462-610 |
| Cow position: | chr13:43784100-43783950 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 465-718 |
| Cow position: | chr13:50785000-50784749 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 179 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 232, 143 |
| Conread position: | 472-668 |
| Cow position: | chr13:30324847-30325043 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 169, 153 |
| Conread position: | 474-647 |
| Cow position: | chr13:50813613-50813442 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 164, 8 |
| Conread position: | 477-687 |
| Cow position: | chr13:24633621-24633407 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 47, 107 |
| Conread position: | 482-666 |
| Cow position: | chr13:31488889-31488707 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 164, 142 |
| Conread position: | 486-666 |
| Cow position: | chr13:19329274-19329094 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 120, 82 |
| Conread position: | 486-666 |
| Cow position: | chr13:27710937-27710759 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 171, 138 |
| Conread position: | 495-678 |
| Cow position: | chr13:34872494-34872670 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 107, 10 |
| Conread position: | 509-675 |
| Cow position: | chr13:49710854-49710683 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 29, 119 |
| Conread position: | 530-666 |
| Cow position: | chr13:20806657-20806523 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 116, 95 |
Show alignments to all cow chromosomes.