Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01G090098.5 |
| Conread position: | 336-596 |
| Cow position: | chr14:47013503-47013757 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 65, 19 |
| Conread position: | 337-599 |
| Cow position: | chr14:20883401-20883146 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 337-599 |
| Cow position: | chr14:43375871-43375614 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 217, 16 |
| Conread position: | 337-611 |
| Cow position: | chr14:5570145-5569877 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 118, 20 |
| Conread position: | 337-613 |
| Cow position: | chr14:13153155-13153427 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 42, 17 |
| Conread position: | 337-619 |
| Cow position: | chr14:26040815-26040539 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 42, 16 |
| Conread position: | 337-665 |
| Cow position: | chr14:10081765-10082092 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 227 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 43, 19 |
| Conread position: | 337-666 |
| Cow position: | chr14:16517376-16517696 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 219 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 43, 16 |
| Conread position: | 337-666 |
| Cow position: | chr14:20887327-20887644 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 229 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 141, 18 |
| Conread position: | 337-666 |
| Cow position: | chr14:45594716-45594391 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 239 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 42, 16 |
| Conread position: | 337-675 |
| Cow position: | chr14:7149178-7149506 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 233 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 52, 28 |
| Conread position: | 337-695 |
| Cow position: | chr14:7116074-7115703 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 16 |
| Conread position: | 337-711 |
| Cow position: | chr14:1857984-1858348 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 16 |
| Conread position: | 337-715 |
| Cow position: | chr14:37249599-37249961 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 16 |
| Conread position: | 337-717 |
| Cow position: | chr14:33436228-33436619 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 17 |
| Conread position: | 337-718 |
| Cow position: | chr14:20690148-20690547 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 277 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 106, 16 |
| Conread position: | 338-591 |
| Cow position: | chr14:36358020-36357764 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 86, 17 |
| Conread position: | 348-660 |
| Cow position: | chr14:44539114-44539423 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 53, 114 |
| Conread position: | 350-666 |
| Cow position: | chr14:45731061-45731368 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 29, 75 |
| Conread position: | 350-667 |
| Cow position: | chr14:11075877-11076189 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 29, 42 |
| Conread position: | 352-666 |
| Cow position: | chr14:26257387-26257688 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 27, 38 |
| Conread position: | 352-666 |
| Cow position: | chr14:26260571-26260872 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 27, 38 |
| Conread position: | 353-627 |
| Cow position: | chr14:45780229-45779964 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 27, 71 |
| Conread position: | 353-637 |
| Cow position: | chr14:1533725-1534003 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 45, 64 |
| Conread position: | 353-671 |
| Cow position: | chr14:18579395-18579082 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 70 |
| Conread position: | 353-675 |
| Cow position: | chr14:12246892-12246572 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 26, 72 |
| Conread position: | 353-675 |
| Cow position: | chr14:16026190-16026523 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 26, 252 |
| Conread position: | 353-679 |
| Cow position: | chr14:23754941-23755247 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 125, 77 |
| Conread position: | 353-687 |
| Cow position: | chr14:23150014-23149678 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 26, 72 |
| Conread position: | 353-703 |
| Cow position: | chr14:13722206-13722537 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 290, 79 |
| Conread position: | 354-637 |
| Cow position: | chr14:47151723-47152011 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 83, 258 |
| Conread position: | 355-612 |
| Cow position: | chr14:3703370-3703110 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 24, 64 |
| Conread position: | 355-688 |
| Cow position: | chr14:50468508-50468842 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 226 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 57, 21 |
| Conread position: | 355-731 |
| Cow position: | chr14:23148974-23148609 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 78 |
| Conread position: | 356-678 |
| Cow position: | chr14:8456778-8456447 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 50, 75 |
| Conread position: | 368-718 |
| Cow position: | chr14:25503047-25503403 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 251 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 61, 119 |
| Conread position: | 369-612 |
| Cow position: | chr14:8037153-8037381 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 378-588 |
| Cow position: | chr14:11104563-11104360 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 25, 53 |
| Conread position: | 433-632 |
| Cow position: | chr14:34097188-34096990 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 46, 27 |
| Conread position: | 435-671 |
| Cow position: | chr14:4722564-4722328 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 203, 27 |
| Conread position: | 437-701 |
| Cow position: | chr14:38359494-38359756 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 16, 168 |
| Conread position: | 452-644 |
| Cow position: | chr14:45733977-45733789 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 161, 22 |
| Conread position: | 452-666 |
| Cow position: | chr14:17394805-17394587 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 27, 179 |
| Conread position: | 459-645 |
| Cow position: | chr14:10488817-10489005 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 20, 164 |
| Conread position: | 462-590 |
| Cow position: | chr14:23880456-23880583 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 24, 18 |
| Conread position: | 477-666 |
| Cow position: | chr14:19838635-19838449 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 136, 109 |
| Conread position: | 478-660 |
| Cow position: | chr14:33534376-33534555 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 128, 59 |
| Conread position: | 487-668 |
| Cow position: | chr14:18439332-18439150 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 154, 0 |
| Conread position: | 495-754 |
| Cow position: | chr14:8458303-8458029 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 114, 267 |
| Conread position: | 501-637 |
| Cow position: | chr14:2279154-2279289 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 70, 86 |
| Conread position: | 502-668 |
| Cow position: | chr14:2343717-2343555 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 521-666 |
| Cow position: | chr14:40014100-40014245 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 85, 105 |
Show alignments to all cow chromosomes.