Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01G090098.5 |
| Conread position: | 336-717 |
| Cow position: | chr15:233046-233442 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 270 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 105, 18 |
| Conread position: | 337-599 |
| Cow position: | chr15:44999990-44999729 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 72, 16 |
| Conread position: | 337-611 |
| Cow position: | chr15:8284910-8284648 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 191 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 116, 18 |
| Conread position: | 337-711 |
| Cow position: | chr15:26624562-26624924 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 16 |
| Conread position: | 337-718 |
| Cow position: | chr15:43654891-43655270 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 18 |
| Conread position: | 339-591 |
| Cow position: | chr15:28614362-28614604 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 82, 14 |
| Conread position: | 341-598 |
| Cow position: | chr15:42257322-42257076 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 60, 16 |
| Conread position: | 343-675 |
| Cow position: | chr15:42381776-42382113 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 238 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 110, 7 |
| Conread position: | 346-740 |
| Cow position: | chr15:52822666-52823066 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 10 |
| Conread position: | 352-587 |
| Cow position: | chr15:9277496-9277718 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 101, 78 |
| Conread position: | 352-754 |
| Cow position: | chr15:11730121-11730496 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 276 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 356, 27 |
| Conread position: | 353-573 |
| Cow position: | chr15:41208361-41208149 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 26, 72 |
| Conread position: | 353-596 |
| Cow position: | chr15:44963114-44962871 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 26, 46 |
| Conread position: | 353-602 |
| Cow position: | chr15:10748521-10748280 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 46, 82 |
| Conread position: | 353-621 |
| Cow position: | chr15:14218985-14219249 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 197 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 9, 78 |
| Conread position: | 353-655 |
| Cow position: | chr15:1036776-1037073 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 213 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 22, 14 |
| Conread position: | 353-666 |
| Cow position: | chr15:11676715-11677023 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 26, 71 |
| Conread position: | 353-675 |
| Cow position: | chr15:26304434-26304740 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 230 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 48, 21 |
| Conread position: | 353-716 |
| Cow position: | chr15:14088866-14088517 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 26 |
| Conread position: | 355-669 |
| Cow position: | chr15:9370092-9369780 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 75, 50 |
| Conread position: | 355-678 |
| Cow position: | chr15:433337-433022 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 273, 75 |
| Conread position: | 355-692 |
| Cow position: | chr15:6653739-6654080 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 85, 132 |
| Conread position: | 355-711 |
| Cow position: | chr15:39569017-39568655 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 60 |
| Conread position: | 356-584 |
| Cow position: | chr15:33849612-33849392 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 115, 57 |
| Conread position: | 356-716 |
| Cow position: | chr15:30559985-30559635 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 255 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 15, 68 |
| Conread position: | 357-599 |
| Cow position: | chr15:14861850-14861618 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 182 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 240, 75 |
| Conread position: | 357-675 |
| Cow position: | chr15:22337096-22336768 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 233 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 13, 75 |
| Conread position: | 357-716 |
| Cow position: | chr15:23339201-23339543 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 162, 27 |
| Conread position: | 364-579 |
| Cow position: | chr15:10816053-10816254 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 7, 41 |
| Conread position: | 368-716 |
| Cow position: | chr15:29273802-29274135 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 372-636 |
| Cow position: | chr15:26133835-26133569 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 50, 237 |
| Conread position: | 391-613 |
| Cow position: | chr15:22486467-22486238 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 37, 159 |
| Conread position: | 393-608 |
| Cow position: | chr15:28977198-28977398 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 436-639 |
| Cow position: | chr15:42288794-42288998 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 159 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 43, 188 |
| Conread position: | 452-675 |
| Cow position: | chr15:14494433-14494666 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 452-675 |
| Cow position: | chr15:16444707-16444480 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 454-637 |
| Cow position: | chr15:22931079-22931262 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 24, 48 |
| Conread position: | 454-678 |
| Cow position: | chr15:30945280-30945504 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 25, 160 |
| Conread position: | 463-710 |
| Cow position: | chr15:22093166-22092924 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 16, 157 |
| Conread position: | 464-687 |
| Cow position: | chr15:34436343-34436570 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 176 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 15, 162 |
| Conread position: | 477-644 |
| Cow position: | chr15:5000834-5001000 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 12, 77 |
| Conread position: | 477-666 |
| Cow position: | chr15:29596586-29596774 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 136, 149 |
| Conread position: | 477-680 |
| Cow position: | chr15:44902552-44902348 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 169, 143 |
| Conread position: | 487-666 |
| Cow position: | chr15:18638928-18638748 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 134, 118 |
| Conread position: | 502-611 |
| Cow position: | chr15:5274320-5274429 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 89 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 502-718 |
| Cow position: | chr15:46340557-46340341 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 164 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 144, 98 |
| Conread position: | 508-619 |
| Cow position: | chr15:4332634-4332522 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 90 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 511-695 |
| Cow position: | chr15:39802489-39802306 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 102, 118 |
| Conread position: | 522-672 |
| Cow position: | chr15:36382508-36382665 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 84, 91 |
Show alignments to all cow chromosomes.