Cow genome map

Conread name: Ss1.1-Tra1-TCH01G090098.5

Conread position: 337-549
Cow position: chr16:11172068-11171861 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 150
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 139, 12

Conread position: 337-565
Cow position: chr16:31529371-31529145 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 166
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 142, 18

Conread position: 337-592
Cow position: chr16:33872226-33871971 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 175
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 120, 18

Conread position: 337-601
Cow position: chr16:53753364-53753639 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 200
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 81, 20

Conread position: 337-705
Cow position: chr16:18054764-18054402 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 258
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 42, 17

Conread position: 337-705
Cow position: chr16:29626080-29626438 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 254
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 34, 16

Conread position: 337-709
Cow position: chr16:40516327-40516679 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 14

Conread position: 337-722
Cow position: chr16:54014995-54014624 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 263
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 119, 16

Conread position: 338-678
Cow position: chr16:15682006-15682321 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 339-597
Cow position: chr16:52864168-52864430 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 187
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 39, 18

Conread position: 343-603
Cow position: chr16:2522520-2522263 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 173
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 36, 10

Conread position: 343-607
Cow position: chr16:31531399-31531142 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 188
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 36, 10

Conread position: 343-637
Cow position: chr16:34614150-34613864 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 204
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 14, 90

Conread position: 343-678
Cow position: chr16:53198170-53198500 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 234
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 39, 10

Conread position: 350-617
Cow position: chr16:40122305-40122032 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 198
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 29, 40

Conread position: 352-695
Cow position: chr16:27274840-27275171 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 242
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 104, 70

Conread position: 353-572
Cow position: chr16:49979320-49979105 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 158
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 26, 72

Conread position: 353-604
Cow position: chr16:47185173-47184933 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 176
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 49, 63

Conread position: 353-607
Cow position: chr16:23948365-23948118 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 183
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 26, 67

Conread position: 353-666
Cow position: chr16:47871213-47871520 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 227
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 26, 71

Conread position: 353-673
Cow position: chr16:56079018-56078705 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 229
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 52, 8

Conread position: 353-737
Cow position: chr16:13924755-13925136 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 76

Conread position: 354-623
Cow position: chr16:21979709-21979979 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 184
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 25, 58

Conread position: 355-611
Cow position: chr16:33440101-33439852 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 182
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 123, 75

Conread position: 355-618
Cow position: chr16:16600143-16599886 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 193
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 98, 61

Conread position: 355-666
Cow position: chr16:24173478-24173784 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 221
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 12, 19

Conread position: 355-672
Cow position: chr16:15668898-15669206 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 214
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 50, 81

Conread position: 355-728
Cow position: chr16:21558361-21557994 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 253
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 45, 79

Conread position: 362-637
Cow position: chr16:33644104-33644373 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 191
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 119, 61

Conread position: 367-722
Cow position: chr16:228965-228634 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 253
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 276, 66

Conread position: 378-675
Cow position: chr16:49208316-49208603 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 205
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 18, 10

Conread position: 435-679
Cow position: chr16:39021310-39021067 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 177
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 17, 125

Conread position: 435-711
Cow position: chr16:17749330-17749598 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 202
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 208, 44

Conread position: 436-632
Cow position: chr16:3850428-3850623 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 140
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 20, 77

Conread position: 436-703
Cow position: chr16:122508-122784 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 185
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 166, 26

Conread position: 444-608
Cow position: chr16:40507331-40507493 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 123
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 35, 7

Conread position: 452-606
Cow position: chr16:13108918-13109068 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 10, 0

Conread position: 452-618
Cow position: chr16:30829492-30829657 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 125
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 27, 138

Conread position: 452-637
Cow position: chr16:15433988-15433803 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 135
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 36, 174

Conread position: 452-666
Cow position: chr16:5651373-5651158 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 155
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 16, 178

Conread position: 452-666
Cow position: chr16:47743178-47742962 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 153
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 24, 142

Conread position: 452-675
Cow position: chr16:37225502-37225725 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 162
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 27, 130

Conread position: 452-716
Cow position: chr16:4614643-4614381 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 76

Conread position: 453-599
Cow position: chr16:33906920-33907066 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 114
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 455-644
Cow position: chr16:4396714-4396519 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 145
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 24, 177

Conread position: 458-594
Cow position: chr16:45600836-45600699 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 106
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 21, 0

Conread position: 458-754
Cow position: chr16:10629703-10629406 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 216
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 144, 57

Conread position: 462-611
Cow position: chr16:48889766-48889917 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 118
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 29, 0

Conread position: 471-611
Cow position: chr16:10641963-10641822 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 107
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 55, 42

Conread position: 473-661
Cow position: chr16:15913883-15914066 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 137
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 172, 29

Conread position: 474-666
Cow position: chr16:23846525-23846709 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 148
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 169, 76

Conread position: 477-666
Cow position: chr16:27174249-27174444 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 144
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 38, 188

Conread position: 477-667
Cow position: chr16:45132863-45133056 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 141
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 148, 185

Conread position: 477-675
Cow position: chr16:52775432-52775629 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 144
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 136, 57

Conread position: 477-678
Cow position: chr16:29661515-29661314 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 153
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 129, 136

Conread position: 477-711
Cow position: chr16:2250027-2249793 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 165
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 161, 128

Conread position: 480-708
Cow position: chr16:53617405-53617630 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 170
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 107, 150

Conread position: 482-726
Cow position: chr16:56202770-56202533 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 171
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 102, 141

Conread position: 482-752
Cow position: chr16:11166806-11166533 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 191
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 31, 265

Conread position: 483-665
Cow position: chr16:35280839-35280659 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 135
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 158, 122

Conread position: 484-711
Cow position: chr16:31133385-31133159 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 175
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 163, 141

Conread position: 501-604
Cow position: chr16:50323340-50323237 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 84
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 505-608
Cow position: chr16:46161912-46161809 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 84
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 522-666
Cow position: chr16:40518047-40518189 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 124, 102

Show alignments to all cow chromosomes.