Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01G090098.5 |
| Conread position: | 337-536 |
| Cow position: | chr18:37708210-37708404 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 142, 18 |
| Conread position: | 337-670 |
| Cow position: | chr18:2116832-2117161 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 235 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 151, 17 |
| Conread position: | 337-672 |
| Cow position: | chr18:17220690-17221041 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 65, 18 |
| Conread position: | 337-672 |
| Cow position: | chr18:17235338-17235689 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 65, 18 |
| Conread position: | 337-672 |
| Cow position: | chr18:52393033-52393366 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 16 |
| Conread position: | 337-692 |
| Cow position: | chr18:17234399-17234048 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 18 |
| Conread position: | 337-695 |
| Cow position: | chr18:55145779-55146128 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 42, 16 |
| Conread position: | 337-716 |
| Cow position: | chr18:21737068-21737444 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 79 |
| Conread position: | 338-591 |
| Cow position: | chr18:42808669-42808919 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 81, 15 |
| Conread position: | 338-592 |
| Cow position: | chr18:7111928-7111687 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 340-564 |
| Cow position: | chr18:27827991-27827774 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 56, 10 |
| Conread position: | 341-722 |
| Cow position: | chr18:44215400-44215008 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 14 |
| Conread position: | 343-690 |
| Cow position: | chr18:8340681-8341015 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 26, 10 |
| Conread position: | 350-671 |
| Cow position: | chr18:24796460-24796142 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 235 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 29, 75 |
| Conread position: | 350-717 |
| Cow position: | chr18:49646543-49646902 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 72 |
| Conread position: | 352-673 |
| Cow position: | chr18:4494742-4495054 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 224 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 101, 6 |
| Conread position: | 353-548 |
| Cow position: | chr18:39097925-39097740 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 18, 78 |
| Conread position: | 353-601 |
| Cow position: | chr18:22418985-22418731 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 353-637 |
| Cow position: | chr18:52707097-52707374 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 26, 70 |
| Conread position: | 353-675 |
| Cow position: | chr18:31954732-31955065 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 26, 188 |
| Conread position: | 355-678 |
| Cow position: | chr18:4472048-4471742 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 98, 75 |
| Conread position: | 355-687 |
| Cow position: | chr18:21611592-21611926 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 24, 82 |
| Conread position: | 357-594 |
| Cow position: | chr18:16071944-16071711 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 44, 73 |
| Conread position: | 357-659 |
| Cow position: | chr18:51389112-51389404 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 217 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 16, 23 |
| Conread position: | 358-596 |
| Cow position: | chr18:4481042-4480808 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 21, 58 |
| Conread position: | 358-623 |
| Cow position: | chr18:8691438-8691701 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 9, 17 |
| Conread position: | 360-591 |
| Cow position: | chr18:13729837-13729610 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 153, 69 |
| Conread position: | 361-637 |
| Cow position: | chr18:43243821-43243549 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 18, 64 |
| Conread position: | 361-711 |
| Cow position: | chr18:42735345-42735007 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 118, 40 |
| Conread position: | 364-675 |
| Cow position: | chr18:32396289-32395967 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 231 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 61, 228 |
| Conread position: | 368-601 |
| Cow position: | chr18:16064955-16064727 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 50, 11 |
| Conread position: | 368-712 |
| Cow position: | chr18:37762319-37761985 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 61, 109 |
| Conread position: | 392-655 |
| Cow position: | chr18:14140148-14139893 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 186 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 214, 39 |
| Conread position: | 399-716 |
| Cow position: | chr18:32401558-32401244 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 22 |
| Conread position: | 435-695 |
| Cow position: | chr18:25086580-25086331 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 21, 107 |
| Conread position: | 437-601 |
| Cow position: | chr18:47987278-47987443 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 141, 0 |
| Conread position: | 438-783 |
| Cow position: | chr18:880575-880236 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 143 |
| Conread position: | 452-619 |
| Cow position: | chr18:38308703-38308875 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 15, 33 |
| Conread position: | 452-666 |
| Cow position: | chr18:56216692-56216478 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 27, 140 |
| Conread position: | 462-629 |
| Cow position: | chr18:10486448-10486280 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 27, 83 |
| Conread position: | 462-675 |
| Cow position: | chr18:52708724-52708512 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 26, 55 |
| Conread position: | 477-603 |
| Cow position: | chr18:45654951-45654826 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 477-684 |
| Cow position: | chr18:48004637-48004429 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 160, 70 |
| Conread position: | 482-660 |
| Cow position: | chr18:25088958-25088785 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 130, 49 |
| Conread position: | 488-632 |
| Cow position: | chr18:30979048-30979193 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 490-670 |
| Cow position: | chr18:1707777-1707957 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 154, 24 |
Show alignments to all cow chromosomes.