Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01G090098.5 |
| Conread position: | 333-637 |
| Cow position: | chr2:33512566-33512254 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 64 |
| Conread position: | 337-592 |
| Cow position: | chr2:37096886-37096632 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 42, 18 |
| Conread position: | 337-599 |
| Cow position: | chr2:68702430-68702685 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 75, 16 |
| Conread position: | 337-601 |
| Cow position: | chr2:46398561-46398285 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 193 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 92, 16 |
| Conread position: | 337-609 |
| Cow position: | chr2:23043311-23043581 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 95, 16 |
| Conread position: | 337-611 |
| Cow position: | chr2:45690082-45690344 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 203 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 142, 16 |
| Conread position: | 337-632 |
| Cow position: | chr2:33219363-33219079 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 142, 16 |
| Conread position: | 337-655 |
| Cow position: | chr2:29450413-29450727 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 225 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 42, 13 |
| Conread position: | 337-670 |
| Cow position: | chr2:64154585-64154923 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 81, 20 |
| Conread position: | 337-687 |
| Cow position: | chr2:70279080-70279419 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 243 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 137, 11 |
| Conread position: | 337-700 |
| Cow position: | chr2:39548991-39548635 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 305, 20 |
| Conread position: | 337-716 |
| Cow position: | chr2:73750788-73751161 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 16 |
| Conread position: | 337-718 |
| Cow position: | chr2:2400370-2400743 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 18 |
| Conread position: | 337-722 |
| Cow position: | chr2:19063750-19063380 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 16 |
| Conread position: | 341-754 |
| Cow position: | chr2:48071222-48070790 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 14 |
| Conread position: | 343-525 |
| Cow position: | chr2:64784502-64784327 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 112, 10 |
| Conread position: | 343-601 |
| Cow position: | chr2:38809502-38809251 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 36, 10 |
| Conread position: | 343-624 |
| Cow position: | chr2:46490116-46490392 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 197 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 39, 12 |
| Conread position: | 343-666 |
| Cow position: | chr2:27776716-27777032 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 36, 10 |
| Conread position: | 343-676 |
| Cow position: | chr2:42191044-42190718 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 236 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 36, 10 |
| Conread position: | 343-706 |
| Cow position: | chr2:59163976-59163625 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 249 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 39, 12 |
| Conread position: | 344-711 |
| Cow position: | chr2:19150423-19150068 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 9 |
| Conread position: | 350-673 |
| Cow position: | chr2:46258539-46258218 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 39 |
| Conread position: | 351-711 |
| Cow position: | chr2:55407104-55407443 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 255 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 105, 60 |
| Conread position: | 352-623 |
| Cow position: | chr2:46277254-46277535 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 92, 64 |
| Conread position: | 352-644 |
| Cow position: | chr2:13332074-13332361 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 27, 73 |
| Conread position: | 353-601 |
| Cow position: | chr2:37052328-37052592 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 78, 218 |
| Conread position: | 353-623 |
| Cow position: | chr2:74482075-74482340 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 14, 21 |
| Conread position: | 353-637 |
| Cow position: | chr2:5327671-5327948 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 27, 75 |
| Conread position: | 353-640 |
| Cow position: | chr2:3713899-3713620 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 30, 76 |
| Conread position: | 353-644 |
| Cow position: | chr2:36951184-36950908 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 201 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 125, 66 |
| Conread position: | 353-665 |
| Cow position: | chr2:71461931-71461626 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 26, 76 |
| Conread position: | 353-666 |
| Cow position: | chr2:15339393-15339696 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 27, 71 |
| Conread position: | 353-675 |
| Cow position: | chr2:69641097-69640791 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 215 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 136, 26 |
| Conread position: | 353-678 |
| Cow position: | chr2:856493-856807 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 218 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 29, 71 |
| Conread position: | 353-679 |
| Cow position: | chr2:81129859-81130178 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 236 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 26, 55 |
| Conread position: | 353-706 |
| Cow position: | chr2:376993-376645 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 69 |
| Conread position: | 353-711 |
| Cow position: | chr2:45113581-45113928 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 102, 70 |
| Conread position: | 353-738 |
| Cow position: | chr2:69924375-69923995 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 266 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 126, 77 |
| Conread position: | 355-561 |
| Cow position: | chr2:40449673-40449472 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 50, 76 |
| Conread position: | 355-607 |
| Cow position: | chr2:65334436-65334682 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 134, 42 |
| Conread position: | 356-711 |
| Cow position: | chr2:74811418-74811053 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 37 |
| Conread position: | 357-718 |
| Cow position: | chr2:74307981-74308326 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 251 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 118, 65 |
| Conread position: | 358-617 |
| Cow position: | chr2:9509311-9509052 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 183 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 23, 59 |
| Conread position: | 397-666 |
| Cow position: | chr2:64174956-64175216 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 82, 26 |
| Conread position: | 435-611 |
| Cow position: | chr2:66339600-66339781 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 435-672 |
| Cow position: | chr2:74694651-74694890 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 21, 191 |
| Conread position: | 435-726 |
| Cow position: | chr2:77715400-77715114 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 50 |
| Conread position: | 439-678 |
| Cow position: | chr2:70177956-70177717 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 14, 73 |
| Conread position: | 440-734 |
| Cow position: | chr2:66454655-66454941 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 146, 71 |
| Conread position: | 452-674 |
| Cow position: | chr2:57995960-57995742 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 149, 15 |
| Conread position: | 452-691 |
| Cow position: | chr2:49862083-49862319 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 27, 136 |
| Conread position: | 454-718 |
| Cow position: | chr2:12854795-12855057 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 167 |
| Conread position: | 455-676 |
| Cow position: | chr2:36951801-36951576 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 24, 73 |
| Conread position: | 456-611 |
| Cow position: | chr2:15335808-15335963 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 33, 86 |
| Conread position: | 477-666 |
| Cow position: | chr2:46448267-46448076 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 84, 151 |
| Conread position: | 478-678 |
| Cow position: | chr2:42264872-42265070 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 128, 18 |
| Conread position: | 482-612 |
| Cow position: | chr2:1683142-1683012 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 501-666 |
| Cow position: | chr2:18448696-18448859 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 112, 120 |
| Conread position: | 502-636 |
| Cow position: | chr2:76618034-76618167 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 104, 111 |
| Conread position: | 515-679 |
| Cow position: | chr2:23648223-23648387 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 131, 105 |
| Conread position: | 515-695 |
| Cow position: | chr2:46307664-46307842 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 123, 53 |
| Conread position: | 520-668 |
| Cow position: | chr2:73168530-73168383 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 125, 91 |
| Conread position: | 523-717 |
| Cow position: | chr2:19575609-19575414 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 534-718 |
| Cow position: | chr2:64783703-64783520 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 107, 88 |
| Conread position: | 538-720 |
| Cow position: | chr2:36883887-36883708 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 141, 43 |
Show alignments to all cow chromosomes.