Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01G090098.5 |
| Conread position: | 329-709 |
| Cow position: | chr20:20071441-20071085 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 24 |
| Conread position: | 337-572 |
| Cow position: | chr20:41446220-41445992 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 119, 16 |
| Conread position: | 337-629 |
| Cow position: | chr20:13358203-13357914 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 209 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 92, 16 |
| Conread position: | 337-666 |
| Cow position: | chr20:39973761-39973450 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 233 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 42, 16 |
| Conread position: | 338-574 |
| Cow position: | chr20:23999295-23999067 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 65, 15 |
| Conread position: | 338-673 |
| Cow position: | chr20:12324440-12324759 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 118, 17 |
| Conread position: | 342-666 |
| Cow position: | chr20:41172000-41172323 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 217 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 37, 11 |
| Conread position: | 343-706 |
| Cow position: | chr20:7777037-7776680 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 10 |
| Conread position: | 346-670 |
| Cow position: | chr20:32894129-32893803 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 33, 10 |
| Conread position: | 353-569 |
| Cow position: | chr20:36663859-36663645 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 105, 58 |
| Conread position: | 353-607 |
| Cow position: | chr20:11066428-11066673 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 26, 71 |
| Conread position: | 353-609 |
| Cow position: | chr20:3057555-3057306 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 14, 21 |
| Conread position: | 353-639 |
| Cow position: | chr20:12983846-12983557 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 220 |
| Conread position: | 353-666 |
| Cow position: | chr20:26056034-26055725 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 26, 72 |
| Conread position: | 353-673 |
| Cow position: | chr20:30154406-30154097 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 26, 42 |
| Conread position: | 353-711 |
| Cow position: | chr20:19121543-19121190 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 79 |
| Conread position: | 353-722 |
| Cow position: | chr20:11065852-11065479 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 65 |
| Conread position: | 355-628 |
| Cow position: | chr20:18828884-18828619 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 98, 75 |
| Conread position: | 355-653 |
| Cow position: | chr20:42107894-42107606 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 205 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 24, 70 |
| Conread position: | 355-687 |
| Cow position: | chr20:35815462-35815784 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 235 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 34, 80 |
| Conread position: | 357-741 |
| Cow position: | chr20:34964526-34964907 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 269 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 22, 68 |
| Conread position: | 360-632 |
| Cow position: | chr20:20768564-20768829 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 116, 73 |
| Conread position: | 361-718 |
| Cow position: | chr20:37934578-37934928 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 22 |
| Conread position: | 364-718 |
| Cow position: | chr20:33705066-33705431 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 252 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 115, 12 |
| Conread position: | 369-575 |
| Cow position: | chr20:2885935-2885732 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 13, 56 |
| Conread position: | 391-666 |
| Cow position: | chr20:16970799-16970536 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 11, 33 |
| Conread position: | 436-633 |
| Cow position: | chr20:39354305-39354503 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 42, 190 |
| Conread position: | 436-655 |
| Cow position: | chr20:18783979-18784192 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 19, 39 |
| Conread position: | 438-596 |
| Cow position: | chr20:38058778-38058620 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 452-644 |
| Cow position: | chr20:1128382-1128189 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 27, 174 |
| Conread position: | 452-675 |
| Cow position: | chr20:23925229-23925456 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 27, 175 |
| Conread position: | 452-675 |
| Cow position: | chr20:37071457-37071231 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 27, 163 |
| Conread position: | 454-675 |
| Cow position: | chr20:5540684-5540907 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 168 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 25, 171 |
| Conread position: | 454-675 |
| Cow position: | chr20:24000487-24000267 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 25, 91 |
| Conread position: | 474-675 |
| Cow position: | chr20:23913453-23913254 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 172, 14 |
| Conread position: | 495-662 |
| Cow position: | chr20:3054076-3053907 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 118, 129 |
| Conread position: | 502-626 |
| Cow position: | chr20:4624363-4624239 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 509-666 |
| Cow position: | chr20:4256699-4256856 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 79, 117 |
| Conread position: | 517-666 |
| Cow position: | chr20:33190789-33190642 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 129, 107 |
Show alignments to all cow chromosomes.